Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003121
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.500s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0086399.1
n.a. PREDICTED: SWI/SNF complex component SNF12 homolog [Glycine max] gi|356511807|ref|XP_003524614.1| chr0 34877670 34880826 +
4 domain predictions
1 GO term
Lj0g3v0127099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| chr0 57280917 57289518 -
4 domain predictions
1 GO term
Lj0g3v0127099.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| chr0 57280917 57289518 -
4 domain predictions
1 GO term
Lj0g3v0320079.1
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357463633|ref|XP_003602098.1| chr0 167054195 167057054 -
4 domain predictions
1 GO term
Lj1g3v0050930.1
n.a. PREDICTED: upstream activation factor subunit UAF30-like [Cicer arietinum] gi|502158846|ref|XP_004511300.1| chr1 280419 282096 -
4 domain predictions
1 GO term
Lj1g3v3357590.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590942 -
4 domain predictions
1 GO term
Lj1g3v3357590.2
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590892 -
4 domain predictions
1 GO term
Lj2g3v0547900.1
n.a. Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357498959|ref|XP_003619768.1| chr2 7324092 7334343 -
4 domain predictions
1 GO term
Lj2g3v0547900.2
n.a. Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357498959|ref|XP_003619768.1| chr2 7324092 7334343 -
4 domain predictions
1 GO term
Lj2g3v1560810.1
n.a. PREDICTED: upstream activation factor subunit UAF30-like [Glycine max] gi|356496496|ref|XP_003517103.1| chr2 24876520 24877344 +
4 domain predictions
1 GO term
Lj2g3v1831970.1
n.a. PREDICTED: upstream activation factor subunit spp27-like isoform 1 [Glycine max] gi|356496858|ref|XP_003517282.1| chr2 27672233 27677814 +
4 domain predictions
1 GO term
Lj2g3v2538590.1
n.a. Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| chr2 35107944 35111113 -
4 domain predictions
1 GO term
Lj3g3v0462070.1
n.a. PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] gi|356544210|ref|XP_003540547.1| chr3 5081798 5087660 -
3 domain predictions
1 GO term
Lj4g3v0120100.1
n.a. PREDICTED: upstream activation factor subunit UAF30-like [Fragaria vesca subsp]. vesca] gi|470115751|ref|XP_004294055.1| chr4 1213340 1216952 -
4 domain predictions
1 GO term
Lj4g3v0120100.2
n.a. SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] gi|18415906|ref|NP_567661.1| chr4 1214020 1216952 -
4 domain predictions
1 GO term
Lj4g3v1388320.1
n.a. PREDICTED: SWI/SNF complex component SNF12 homolog [Cicer arietinum] gi|502176194|ref|XP_004515819.1| chr4 21320232 21323849 -
4 domain predictions
1 GO term
Lj6g3v0365860.3
n.a. Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357460663|ref|XP_003600613.1| chr6 3421096 3429095 -
4 domain predictions
1 GO term
Lj6g3v0815560.1
n.a. Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| chr6 8017786 8021527 -
4 domain predictions
1 GO term
Lj6g3v0820200.1
n.a. PREDICTED: upstream activation factor subunit UAF30-like [Fragaria vesca subsp]. vesca] gi|470119496|ref|XP_004295850.1| chr6 8350996 8353238 -
4 domain predictions
1 GO term
LotjaGi1g1v0238200.1
n.a. SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|G7J5J5|G7J5J5_MEDTR Chromatin remodeling complex subunit; Found in the gene: LotjaGi1g1v0238200 LjG1.1_chr1 56774672 56777751 +
2 domain predictions
1 GO term
LotjaGi1g1v0238200.2
n.a. SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|G7J5J5|G7J5J5_MEDTR Chromatin remodeling complex subunit; Found in the gene: LotjaGi1g1v0238200 LjG1.1_chr1 56774734 56777752 +
2 domain predictions
1 GO term
LotjaGi1g1v0563100.2
n.a. Zinc finger CCCH domain protein; TAIR: AT2G16485.2 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A0B2RGJ5|A0A0B2RGJ5_GLYSO Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 LjG1.1_chr1 109564605 109577030 -
2 domain predictions
1 GO term
LotjaGi1g1v0563100.3
n.a. Zinc finger CCCH domain protein; TAIR: AT2G16485.1 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A151TCZ6|A0A151TCZ6_CAJCA Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 LjG1.1_chr1 109568623 109573171 -
2 domain predictions
1 GO term
LotjaGi1g1v0784500.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.2 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7KGZ1|K7KGZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784500 LjG1.1_chr1 135719097 135726390 +
2 domain predictions
1 GO term
LotjaGi2g1v0087800.1
n.a. SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|K7KP05|K7KP05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0087800 LjG1.1_chr2 25587998 25591461 +
2 domain predictions
1 GO term
LotjaGi2g1v0168800_LC.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC LjG1.1_chr2 58098227 58108775 -
2 domain predictions
1 GO term
LotjaGi2g1v0168800_LC.2
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC LjG1.1_chr2 58098432 58108725 -
2 domain predictions
1 GO term
LotjaGi2g1v0349400.1
n.a. Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|I3SIS2|I3SIS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 LjG1.1_chr2 82617037 82621896 +
2 domain predictions
1 GO term
LotjaGi2g1v0349400.2
n.a. Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|I3SIS2|I3SIS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 LjG1.1_chr2 82617063 82621895 +
2 domain predictions
1 GO term
LotjaGi2g1v0349400.3
n.a. Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30; TrEMBL-Plants: tr|I1LIF9|I1LIF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 LjG1.1_chr2 82618772 82621895 +
2 domain predictions
1 GO term
LotjaGi2g1v0384000.1
n.a. Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|G7KGD4|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000 LjG1.1_chr2 88026227 88032863 +
2 domain predictions
1 GO term
LotjaGi2g1v0398300.1
n.a. Upstream activation factor subunit spp27; TAIR: AT3G19080.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1J943|I1J943_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0398300 LjG1.1_chr2 89550480 89556417 +
2 domain predictions
1 GO term
LotjaGi2g1v0460900.1
n.a. Upstream activation factor subunit spp27; TAIR: AT2G14880.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I3TA97|I3TA97_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0460900 LjG1.1_chr2 95404679 95406821 +
2 domain predictions
1 GO term
LotjaGi4g1v0008600.1
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 LjG1.1_chr4 1179314 1182992 -
2 domain predictions
1 GO term
LotjaGi4g1v0008600.2
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 LjG1.1_chr4 1179966 1182466 -
2 domain predictions
1 GO term
LotjaGi4g1v0222400.1
n.a. SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|A0A1J7HXV2|A0A1J7HXV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0222400 LjG1.1_chr4 52745968 52750013 -
2 domain predictions
1 GO term
LotjaGi6g1v0050200.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRF3|K7LRF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050200 LjG1.1_chr6 9010514 9019090 -
2 domain predictions
1 GO term
LotjaGi6g1v0050400.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRE8|K7LRE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400 LjG1.1_chr6 9047841 9056267 -
2 domain predictions
1 GO term
LotjaGi6g1v0151600.1
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1KYE8|I1KYE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0151600 LjG1.1_chr6 42807888 42811830 -
2 domain predictions
1 GO term
LotjaGi6g1v0154300.1
n.a. Upstream activation factor subunit spp27; TAIR: AT4G26810.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30; TrEMBL-Plants: tr|A0A1J7HL65|A0A1J7HL65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0154300 LjG1.1_chr6 43259372 43262515 -
2 domain predictions
1 GO term