Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0371000.2

Overview

Field Value
Gene ID LotjaGi2g1v0371000
Transcript ID LotjaGi2g1v0371000.2
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description UDP-glucuronate decarboxylase protein 6; TAIR: AT3G46440.1 UDP-XYL synthase 5; Swiss-Prot: sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5; TrEMBL-Plants: tr|I1LQS4|I1LQS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0371000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:86776951..86780368) extracted from Lotus japonicus Gifu genome v1.2.

TTAGAATACAACTTTTGTCACAGCCCACTTAGATATTTCTAGCGATGCCTTGTCTAACTAACATCTCTTTCATTCTTGAC TATAGTCGAACATGAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAAT GAAAAAAATGAGGTCAGCACGTTTTCCTTTCTGCATAAAATGTGCATAGTTATATTTATTAGTTCTGTTTTTTTCACTGA TTCTATTCTGCTTACCTGACATTCTCATCCTATATTGAATAAAATAGATGCATAATATAGTATGATTTGATAAACTTCGG CAACATCCGCATCTTACTCAGGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGATTGG CCATCCAAGATTTGAACTTATCCGCCATGGTATTGTCCATCTTCGTTTACCATTCAGTTATCTATCTGCTAAAATTGTTG TGCATATAATACACTGGAGGTTAATATATTATTTTGTCCCATTTGTTCGTACATCTCTGAACACTTATGTCTTGGATGTA AACTGATTTCTATCAAGAAGATACTGCGAGATTATGTAATTGGAAGAGGCTTTACAGTTGTTACTCCACAAATTTAAGTA ATTAATATCTCAGGTTTCAGTTGTTTCTTTACCAACCTCAAAATTTACTGGCTGGTGTATGAAAACTATTCTCAGGAAAT AATGACAATGATAACTTAGTGTCTACTTAGTGCATGTTTGGAAACTCATTGGAAAACCATGGTGGACAGAAGCAAAAGCT AAGAGAAGTTGCTTCTATCCACCATGATTGTGGCTTCATCGTGGTTCTCGGACGAGTTTCCAAACATGCACTTGGTATAT TTTGTTATGCATGAAATCTGTCAAGAGATCAGTGATGTTGATGCACATTATCATTCTGATCCTTTTGTAGATGTCACTGA GACTTTGATGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCGTCTCCTATTTTTTACAAATATAATCCTGTGA AGGTATAGTTTTTTTTTCGTCTTGAATCATTTACCTTGTACTTGGCGTGTAAACAAGTTCATGTAACTGTTGAAGATTAG AACACTTTGCTTTTAACGTTCATTGCATAATCATTGACTTCGGTCACTTCAAAGACTTTGCATTTACCTTTCCATGCATA TTGTTACATTCTGCAATCTGCAGTATATTTATATCTATTTCAGTTTTAGGCATACATCTCTGCCAAAACGTTCTCTTAGA CTATCTAACGTGTAAGGAAATAATAATTTTACAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTG CAAAGCGAGTTGGAGCAAGGTAAGAATTATTCTTGAGATAGAAAAAAGAAGACAATTTTAGCTTCTACCATCTGTTGGTC TTAGTTCTATTTCCCCCTTTTTGTGTGGAGTCTTAGTTCTTATTTTACTGACAGGATTTTGCTTACATCAACTTCAGAGG TTTATGGGGATCCTCTTATACATCCCCAGCCTGAAAGCTATTGGGGCAATGTTAACCCCATCGGTACATGCTTTTATCTC AATCTTAACTTGTACCTTGGGATCCTTATATAATATCTGATTCTGTGATTATGAAAGATAGCTGTCCTGCATCAACCACG AAGGCCTTTCTTTCTTATTTAATCTGTGCATCAGGAAGTGGCATATCGTTTGAATTTCTTCTTCATGGCTAACACTAATT ACTTACAGACTTGAGAAGCTAAAAAAATTGAATGAGTTTGTGTGTGTTTTGTGATGAGCTTTCTCATATTGCATTTCCCT TTCTTTTGCCACATATGCGCTAGTTCCTCGATGCAAGACTGAACTTTTTGAGGCAAAAAATTTCTTTTATACAATACTAA TGATGTAGTCCACGGCCCCATGCAACTAATTAATTATGTGCACAACAGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGT GTCGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGAATAGGTAATTTCTGGTCTTCTTTTCTTCATAATTGCCT CCCATTCTATGTAAGGTGTAGCTGGTAGAAAAAATTCATTTGAAACTTAATGAAGTTGTCTTAAACGCAGAAATACGCAT TGCAAGAATCTTTAACACATATGGTCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAA TTCGGTAATTAAACTTACTTTTTCTGGTATATAGTAGTATATATGCAGTAGTGCTATTTCTACATGCCTTGTTTAATCTG TTATGATGGTTCCGGTTGCATGATGCTTGCAATGGGCATGCTCTTAAAACATTGGTTGTCTGCATTCTTTTATTGATTTC ATTATATTAACACCTTAATTTTATTGACTAGCAGTGATTTATTTTCCATTCATCTCCCCATTTCTAAGTTCATGTTTTAT AAGTTTATGTGTCGTTTCTCACATAAGGTTCGGTGTGTTTTAGTAATGAACCCTTGACGGTCCAATCTCCAGGAACACAA ACTCGCAGTTTCTGCTATGTCTCTGATCTGGTAAACATCCCTTAGCTTTTTTTTTTTCATTGAATTACTATTGTTGGAGC TGATTTTGTTTATTGTATGATCAATTAGGTTGATGGCCTTATCCGTCTCATGGATGGATCAGACACTGGACCAATCAACC TTGGAAACCCAGGTTAGATTTCTATCGTAAACCCTGTATTTGAGTATCTTTATTTTTACAAATTGTTAACATATCTTTAC TTTCTTTGCCCTTATTCAATTACTTGAGTCTCTTTGCCTTTTCAGGTGAATTTACAATGCTTGAACTTGCTGAGACAGTG AAGGAGGTCAGTTCTAAGCTTTTATCCTTAACCTCTTGTAGCTTGGTTTAGACCTGTTTGAACTAGTGAATAGTAAAGTG TGATTTGAATGTAATCTTAGAATTTTGGATAGGCCTAACGTTAATTCTAAAATGGTAAGAGTCTATCCTAGATCTGCTTA TTGTGCGCCCCATAAATGAGTCACCCGTAATGTCAATTCTTGCAAATTTCACGATGTCTCACCCTGGGCGTGAAAGAGAG TTGAGAGGTCTTACATTGACTAGACATATGGTCAAATAAGTCTTTAAGAGTAGAAAAAGTTACTTTTCAGGGTAAAATTA GGCTCTTAATCTTTGTTTCATGGTTCATTTTGCAGCTTATTAATCCAAATGTGGAGATAAAGATAGTGGAGAACACTCCT GATGATCCGAGGCAGAGAAAACCAATCATAACCAAAGCAAAGGAATTGCTTGGCTGGGAACCAAAGGTGAAACTGAGGGA TGGCCTTCCTTTCATGGAAGAAGATTTCCGTTTGAGGCTTGGGGTTGAGAAAAATTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0371000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGA GGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGATTGGCCATCCAAGATTTGAACTTA TCCGCCATGATGTCACTGAGACTTTGATGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCGTCTCCTATTTTT TACAAATATAATCCTGTGAAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGG AGCAAGGATTTTGCTTACATCAACTTCAGAGGTTTATGGGGATCCTCTTATACATCCCCAGCCTGAAAGCTATTGGGGCA ATGTTAACCCCATCGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGTGTCGCTGAGACTTTGATGTTTGATTATCATAGG CAACATGGAATAGAAATACGCATTGCAAGAATCTTTAACACATATGGTCCACGCATGAATATTGATGATGGACGTGTTGT CAGCAACTTCATTGCTCAAGCAATTCGTAATGAACCCTTGACGGTCCAATCTCCAGGAACACAAACTCGCAGTTTCTGCT ATGTCTCTGATCTGGTTGATGGCCTTATCCGTCTCATGGATGGATCAGACACTGGACCAATCAACCTTGGAAACCCAGGT GAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAAATGTGGAGATAAAGATAGTGGAGAACAC TCCTGATGATCCGAGGCAGAGAAAACCAATCATAACCAAAGCAAAGGAATTGCTTGGCTGGGAACCAAAGGTGAAACTGA GGGATGGCCTTCCTTTCATGGAAGAAGATTTCCGTTTGAGGCTTGGGGTTGAGAAAAATTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0371000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRILITGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSRDNLKKWIGHPRFELIRHDVTETLMIEVDQIYHLACPASPIF YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQSPGTQTRSFCYVSDLVDGLIRLMDGSDTGPINLGNPG EFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGWEPKVKLRDGLPFMEEDFRLRLGVEKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43078:SF13
1 313 313 1.5E-220 –
PANTHER
PTHR43078
1 313 313 1.5E-220 –
CDD
cd05230
1 305 305 0.0 –
SUPERFAMILY
SSF51735
1 305 305 5.42E-86
IPR036291
Gene3D
G3DSA:3.40.50.720
2 291 290 8.5E-109 –
Pfam
PF16363
4 297 294 4.4E-51
IPR016040
Gene3D
G3DSA:3.90.25.10
183 297 115 8.5E-109 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0371000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…