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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0371000 |
| Transcript ID | LotjaGi2g1v0371000.5 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Udp-glucuronic acid decarboxylase 6; TAIR: AT2G28760.4 UDP-XYL synthase 6; Swiss-Prot: sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5; TrEMBL-Plants: tr|G7JUS9|G7JUS9_MEDTR UDP-glucuronic acid decarboxylase; Found in the gene: LotjaGi2g1v0371000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86778729..86780995) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCGAATCCTTCTAATGGAGATCAACAAACAACACCTTCTAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTC CAAATTCTTTCAGGTGAACTGTCGGATCTTTTATTTTTTGATTCGCAATTTTATAAGCACATTGTTGTTCTTATTTGTTA TCTGTGTCATGTAATATAAGCTTAACATTAATTCAAATAATTTAGTGTCATTTTCCCTGTCTGACCTGTCTCAGTAGATT TTTGTGTTGGTAACTTGGTATGATGGTGCATTGCTTCATAATACGATCATTGGTTAAAAAATTGCATTTCAATTTTCTAT ATTTGTTGAATAACTCATTATTGGCTACGATTTGTTCTTTAGCACTGCAAATCCGTAAAGTTACTGAAAACTTCAGAAAT TTGAACCATCGGAACTTAGTCCTCAAAACATGACTACAAGTTCAGTATTATACCCATGAATCTTATTTTAAGACCCTGCA GAAGAGGGAATTACAGCAGGAAAAGAAAAAAGGTCATAAGTTAAATTGGAAGCTTATCCCCTTTATCTTGGTTAACTGTG GTTCAGAAGCGTATTTGTGTGACCATACATACATGACATAACCACTGGTTCAATTTTGGCATATGATTTAGAATACAACT TTTGTCACAGCCCACTTAGATATTTCTAGCGATGCCTTGTCTAACTAACATCTCTTTCATTCTTGACTATAGTCGAACAT GAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGG TCAGCACGTTTTCCTTTCTGCATAAAATGTGCATAGTTATATTTATTAGTTCTGTTTTTTTCACTGATTCTATTCTGCTT ACCTGACATTCTCATCCTATATTGAATAAAATAGATGCATAATATAGTATGATTTGATAAACTTCGGCAACATCCGCATC TTACTCAGGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGATTGGCCATCCAAGATTT GAACTTATCCGCCATGGTATTGTCCATCTTCGTTTACCATTCAGTTATCTATCTGCTAAAATTGTTGTGCATATAATACA CTGGAGGTTAATATATTATTTTGTCCCATTTGTTCGTACATCTCTGAACACTTATGTCTTGGATGTAAACTGATTTCTAT CAAGAAGATACTGCGAGATTATGTAATTGGAAGAGGCTTTACAGTTGTTACTCCACAAATTTAAGTAATTAATATCTCAG GTTTCAGTTGTTTCTTTACCAACCTCAAAATTTACTGGCTGGTGTATGAAAACTATTCTCAGGAAATAATGACAATGATA ACTTAGTGTCTACTTAGTGCATGTTTGGAAACTCATTGGAAAACCATGGTGGACAGAAGCAAAAGCTAAGAGAAGTTGCT TCTATCCACCATGATTGTGGCTTCATCGTGGTTCTCGGACGAGTTTCCAAACATGCACTTGGTATATTTTGTTATGCATG AAATCTGTCAAGAGATCAGTGATGTTGATGCACATTATCATTCTGATCCTTTTGTAGATGTCACTGAGACTTTGATGATT GAGGTTGATCAGATCTACCATCTTGCATGCCCTGCGTCTCCTATTTTTTACAAATATAATCCTGTGAAGGTATAGTTTTT TTTTCGTCTTGAATCATTTACCTTGTACTTGGCGTGTAAACAAGTTCATGTAACTGTTGAAGATTAGAACACTTTGCTTT TAACGTTCATTGCATAATCATTGACTTCGGTCACTTCAAAGACTTTGCATTTACCTTTCCATGCATATTGTTACATTCTG CAATCTGCAGTATATTTATATCTATTTCAGTTTTAGGCATACATCTCTGCCAAAACGTTCTCTTAGACTATCTAACGTGT AAGGAAATAATAATTTTACAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGG AGCAAGGTAAGAATTATTCTTGAGATAGAAAAAAGAAGACAATTTTAGCTTCTACCATCTGTTGGTCTTAGTTCTATTTC CCCCTTTTTGTGTGGAGTCTTAGTTCTTATTTTACTGACAGGATTTTGCTTACATCAACTTCAGAGGTTTATGGGGATCC TCTTATACATCCCCAGCCTGAAAGCTATTGGGGCAATGTTAACCCCATCGGTACATGCTTTTATCTCAATCTTAACTTGT ACCTTGGGATCCTTATATAATATCTGA
CDS sequence (LotjaGi2g1v0371000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGAATCCTTCTAATGGAGATCAACAAACAACACCTTCTAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTC CAAATTCTTTCAGTCGAACATGAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGA TGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGATTGGC CATCCAAGATTTGAACTTATCCGCCATGATGTCACTGAGACTTTGATGATTGAGGTTGATCAGATCTACCATCTTGCATG CCCTGCGTCTCCTATTTTTTACAAATATAATCCTGTGAAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTG GGCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTTTATGGGGATCCTCTTATACATCCCCAG CCTGAAAGCTATTGGGGCAATGTTAACCCCATCGGTACATGCTTTTATCTCAATCTTAACTTGTACCTTGGGATCCTTAT ATAA
Protein sequence (LotjaGi2g1v0371000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANPSNGDQQTTPSKQPPLPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSRDNLKKWIG HPRFELIRHDVTETLMIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQ PESYWGNVNPIGTCFYLNLNLYLGILI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 3 | 173 | 171 | 1.8E-112 | – | |
| PANTHER | 3 | 173 | 171 | 1.8E-112 | – | |
| SUPERFAMILY | 34 | 171 | 138 | 3.45E-39 | ||
| Gene3D | 35 | 172 | 138 | 1.6E-49 | – | |
| Pfam | 37 | 163 | 127 | 5.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0371000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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