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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0371000 |
| Transcript ID | LotjaGi2g1v0371000.3 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucuronate decarboxylase protein 6; TAIR: AT3G46440.1 UDP-XYL synthase 5; Swiss-Prot: sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5; TrEMBL-Plants: tr|Q9AV98|Q9AV98_PEA UDP-D-glucuronate carboxy-lyase; Found in the gene: LotjaGi2g1v0371000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86776951..86781011) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGAGGTTCTTGCAATGGCGGCGAATCCTTCTAATGGAGATCAACAAACAACACCTTCTAAGCAACCTCCCTTGCCAT CTCCCTTGCGTTTCTCCAAATTCTTTCAGGTGAACTGTCGGATCTTTTATTTTTTGATTCGCAATTTTATAAGCACATTG TTGTTCTTATTTGTTATCTGTGTCATGTAATATAAGCTTAACATTAATTCAAATAATTTAGTGTCATTTTCCCTGTCTGA CCTGTCTCAGTAGATTTTTGTGTTGGTAACTTGGTATGATGGTGCATTGCTTCATAATACGATCATTGGTTAAAAAATTG CATTTCAATTTTCTATATTTGTTGAATAACTCATTATTGGCTACGATTTGTTCTTTAGCACTGCAAATCCGTAAAGTTAC TGAAAACTTCAGAAATTTGAACCATCGGAACTTAGTCCTCAAAACATGACTACAAGTTCAGTATTATACCCATGAATCTT ATTTTAAGACCCTGCAGAAGAGGGAATTACAGCAGGAAAAGAAAAAAGGTCATAAGTTAAATTGGAAGCTTATCCCCTTT ATCTTGGTTAACTGTGGTTCAGAAGCGTATTTGTGTGACCATACATACATGACATAACCACTGGTTCAATTTTGGCATAT GATTTAGAATACAACTTTTGTCACAGCCCACTTAGATATTTCTAGCGATGCCTTGTCTAACTAACATCTCTTTCATTCTT GACTATAGTCGAACATGAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAA AATGAAAAAAATGAGGTCAGCACGTTTTCCTTTCTGCATAAAATGTGCATAGTTATATTTATTAGTTCTGTTTTTTTCAC TGATTCTATTCTGCTTACCTGACATTCTCATCCTATATTGAATAAAATAGATGCATAATATAGTATGATTTGATAAACTT CGGCAACATCCGCATCTTACTCAGGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGAT TGGCCATCCAAGATTTGAACTTATCCGCCATGGTATTGTCCATCTTCGTTTACCATTCAGTTATCTATCTGCTAAAATTG TTGTGCATATAATACACTGGAGGTTAATATATTATTTTGTCCCATTTGTTCGTACATCTCTGAACACTTATGTCTTGGAT GTAAACTGATTTCTATCAAGAAGATACTGCGAGATTATGTAATTGGAAGAGGCTTTACAGTTGTTACTCCACAAATTTAA GTAATTAATATCTCAGGTTTCAGTTGTTTCTTTACCAACCTCAAAATTTACTGGCTGGTGTATGAAAACTATTCTCAGGA AATAATGACAATGATAACTTAGTGTCTACTTAGTGCATGTTTGGAAACTCATTGGAAAACCATGGTGGACAGAAGCAAAA GCTAAGAGAAGTTGCTTCTATCCACCATGATTGTGGCTTCATCGTGGTTCTCGGACGAGTTTCCAAACATGCACTTGGTA TATTTTGTTATGCATGAAATCTGTCAAGAGATCAGTGATGTTGATGCACATTATCATTCTGATCCTTTTGTAGATGTCAC TGAGACTTTGATGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCGTCTCCTATTTTTTACAAATATAATCCTG TGAAGGTATAGTTTTTTTTTCGTCTTGAATCATTTACCTTGTACTTGGCGTGTAAACAAGTTCATGTAACTGTTGAAGAT TAGAACACTTTGCTTTTAACGTTCATTGCATAATCATTGACTTCGGTCACTTCAAAGACTTTGCATTTACCTTTCCATGC ATATTGTTACATTCTGCAATCTGCAGTATATTTATATCTATTTCAGTTTTAGGCATACATCTCTGCCAAAACGTTCTCTT AGACTATCTAACGTGTAAGGAAATAATAATTTTACAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTGGGC TTGCAAAGCGAGTTGGAGCAAGGTAAGAATTATTCTTGAGATAGAAAAAAGAAGACAATTTTAGCTTCTACCATCTGTTG GTCTTAGTTCTATTTCCCCCTTTTTGTGTGGAGTCTTAGTTCTTATTTTACTGACAGGATTTTGCTTACATCAACTTCAG AGGTTTATGGGGATCCTCTTATACATCCCCAGCCTGAAAGCTATTGGGGCAATGTTAACCCCATCGGTACATGCTTTTAT CTCAATCTTAACTTGTACCTTGGGATCCTTATATAATATCTGATTCTGTGATTATGAAAGATAGCTGTCCTGCATCAACC ACGAAGGCCTTTCTTTCTTATTTAATCTGTGCATCAGGAAGTGGCATATCGTTTGAATTTCTTCTTCATGGCTAACACTA ATTACTTACAGACTTGAGAAGCTAAAAAAATTGAATGAGTTTGTGTGTGTTTTGTGATGAGCTTTCTCATATTGCATTTC CCTTTCTTTTGCCACATATGCGCTAGTTCCTCGATGCAAGACTGAACTTTTTGAGGCAAAAAATTTCTTTTATACAATAC TAATGATGTAGTCCACGGCCCCATGCAACTAATTAATTATGTGCACAACAGGAGTTCGTAGTTGTTATGATGAGGGAAAG CGTGTCGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGAATAGGTAATTTCTGGTCTTCTTTTCTTCATAATTG CCTCCCATTCTATGTAAGGTGTAGCTGGTAGAAAAAATTCATTTGAAACTTAATGAAGTTGTCTTAAACGCAGAAATACG CATTGCAAGAATCTTTAACACATATGGTCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAG CAATTCGGTAATTAAACTTACTTTTTCTGGTATATAGTAGTATATATGCAGTAGTGCTATTTCTACATGCCTTGTTTAAT CTGTTATGATGGTTCCGGTTGCATGATGCTTGCAATGGGCATGCTCTTAAAACATTGGTTGTCTGCATTCTTTTATTGAT TTCATTATATTAACACCTTAATTTTATTGACTAGCAGTGATTTATTTTCCATTCATCTCCCCATTTCTAAGTTCATGTTT TATAAGTTTATGTGTCGTTTCTCACATAAGGTTCGGTGTGTTTTAGTAATGAACCCTTGACGGTCCAATCTCCAGGAACA CAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTAAACATCCCTTAGCTTTTTTTTTTTCATTGAATTACTATTGTTGG AGCTGATTTTGTTTATTGTATGATCAATTAGGTTGATGGCCTTATCCGTCTCATGGATGGATCAGACACTGGACCAATCA ACCTTGGAAACCCAGGTTAGATTTCTATCGTAAACCCTGTATTTGAGTATCTTTATTTTTACAAATTGTTAACATATCTT TACTTTCTTTGCCCTTATTCAATTACTTGAGTCTCTTTGCCTTTTCAGGTGAATTTACAATGCTTGAACTTGCTGAGACA GTGAAGGAGGTCAGTTCTAAGCTTTTATCCTTAACCTCTTGTAGCTTGGTTTAGACCTGTTTGAACTAGTGAATAGTAAA GTGTGATTTGAATGTAATCTTAGAATTTTGGATAGGCCTAACGTTAATTCTAAAATGGTAAGAGTCTATCCTAGATCTGC TTATTGTGCGCCCCATAAATGAGTCACCCGTAATGTCAATTCTTGCAAATTTCACGATGTCTCACCCTGGGCGTGAAAGA GAGTTGAGAGGTCTTACATTGACTAGACATATGGTCAAATAAGTCTTTAAGAGTAGAAAAAGTTACTTTTCAGGGTAAAA TTAGGCTCTTAATCTTTGTTTCATGGTTCATTTTGCAGCTTATTAATCCAAATGTGGAGATAAAGATAGTGGAGAACACT CCTGATGATCCGAGGCAGAGAAAACCAATCATAACCAAAGCAAAGGAATTGCTTGGCTGGGAACCAAAGGTGAAACTGAG GGATGGCCTTCCTTTCATGGAAGAAGATTTCCGTTTGAGGCTTGGGGTTGAGAAAAATTAA
CDS sequence (LotjaGi2g1v0371000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGAATCCTTCTAATGGAGATCAACAAACAACACCTTCTAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTC CAAATTCTTTCAGTCGAACATGAGAATCTTGATTACTGGTGGGGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGA TGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGGTCAAGAGACAACCTCAAAAAATGGATTGGC CATCCAAGATTTGAACTTATCCGCCATGATGTCACTGAGACTTTGATGATTGAGGTTGATCAGATCTACCATCTTGCATG CCCTGCGTCTCCTATTTTTTACAAATATAATCCTGTGAAGACAATTAAGACAAATGTGATTGGCACACTGAACATGCTTG GGCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTTTATGGGGATCCTCTTATACATCCCCAG CCTGAAAGCTATTGGGGCAATGTTAACCCCATCGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGTGTCGCTGAGACTTT GATGTTTGATTATCATAGGCAACATGGAATAGAAATACGCATTGCAAGAATCTTTAACACATATGGTCCACGCATGAATA TTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTAATGAACCCTTGACGGTCCAATCTCCAGGAACA CAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTTGATGGCCTTATCCGTCTCATGGATGGATCAGACACTGGACCAAT CAACCTTGGAAACCCAGGTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAAATGTGGAGA TAAAGATAGTGGAGAACACTCCTGATGATCCGAGGCAGAGAAAACCAATCATAACCAAAGCAAAGGAATTGCTTGGCTGG GAACCAAAGGTGAAACTGAGGGATGGCCTTCCTTTCATGGAAGAAGATTTCCGTTTGAGGCTTGGGGTTGAGAAAAATTA A
Protein sequence (LotjaGi2g1v0371000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANPSNGDQQTTPSKQPPLPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSRDNLKKWIG HPRFELIRHDVTETLMIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQ PESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQSPGT QTRSFCYVSDLVDGLIRLMDGSDTGPINLGNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPIITKAKELLGW EPKVKLRDGLPFMEEDFRLRLGVEKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 3 | 346 | 344 | 7.1E-237 | – | |
| PANTHER | 3 | 346 | 344 | 7.1E-237 | – | |
| SUPERFAMILY | 29 | 338 | 310 | 3.45E-87 | ||
| CDD | 34 | 338 | 305 | 0.0 | – | |
| Gene3D | 35 | 324 | 290 | 1.2E-108 | – | |
| Pfam | 37 | 330 | 294 | 6.4E-51 | ||
| Gene3D | 216 | 330 | 115 | 1.2E-108 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0371000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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