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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0371000 |
Transcript ID | LotjaGi2g1v0371000.8 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | UDP-glucuronate decarboxylase protein 6; TAIR: AT2G28760.4 UDP-XYL synthase 6; Swiss-Prot: sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5; TrEMBL-Plants: tr|I3S6E2|I3S6E2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0371000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86783609..86787152) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTGGTTCAGGGTTTGAGTTTCTGAGGCTTTGACAATGGCAACGGATTCTTCTAATGGAGACCATCAGAAAGCAGGA AAGCAACCTCCTTTGCCATCTCCCTTGCGTTTCTCCAAGTTCTTTCAGGTAAACTCTTGCATTGCATTCTGCATGCAACA TTTTGATTCCGATTGTTGTCTGGATCCTGTTATAAGGATTTCTTGTTGATTCACTTTTGATTTTGCTTTTATTCCTTACA ACAGGCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGATAGATTGATGGAAAATG AAAAAAATGAGGTTAGTATAGTTGATATCTTTCTGCTCATAGTGTTAGAGCTAATCAGTGATTTAACTTGTGCAATAAAA TCTTGGTATGATATGTGACCGTGTGTTTGTCTAATCAGGTCATTGTTGCTGATAACTTCTTCACTGGATCAAAAGACAAC CTTAAGAAATGGATTGGTCATCCAAGATTTGAGCTGATTCGTCATGGTAGAAATTTATTTTCTCTACTGCAATTATCCCT TGTGTGATTTTATTCCTCATAAGATGAAACTTGAGGTTAAAATTCCTGCCTTTTCTTCCCACCTTGTGTTAGAAATATAA TGTAAAACAATTATGCGTCCTTTACCTAACAGTTTAAGCTTTTGGGATAGTTGGTTCATGACATGGTATTAGACCCTCTT TGACCAAGTTGAATTTCAGCACTAGGTAGGGTGGTCTGTGCATTGTCCAAGCTTCAAGCCCAGTGGGTGAGGGTGCGTGT TGGAAATATAATATGAAACCATTCATTTGTCTTATACACAACAACTTAAGCTTTTGGGATAGTTGGTTCATGACACCTTG TAGTATGTGTATGGCATGTTAAGTCCAGAATGTGATGGTCTTCAACACAATGAAGGACCATGCAACAGAAGCTTGTTGGT CTTTAAATAAGATATTAAACTGAAGGATATATCACTTTTCTCCATCAATGAACTATATAGAGTAGCGAGCTATATGGTAT TGTTCAAGTGCAAGACACAACAGAACAATAATGCTATCATATGCACTGAGTTTCTCTGTGTTTCCTTATGCCTGCTAATT TGTTTACTTTTTCAATTAGATTGGACCTAATTTTCTTTTCCCCTTCGCAGATGTCACAGAGCAACTGCTGGTTGAGGTTG ATCAAATCTACCATCTTGCATGCCCAGCATCTCCAATTTTCTACAAATACAATCCTGTAAAGGTTGGGTTTTCACAGTCT GGTTTTGTATTAATATCAGTTAATATGGTCCTGTGAACTGTCTACTAGGCTTATTCCTTACTCACAGCTAGGCACAAAAG TAACTTGAATCACCCTTCCCCTAGGTTCCTCCTTATATTTGTTCTGCTGATTTGTCATGAGGATTTCATGCATGTTGTTA TGATGATTCAAGTTGTTTGTAGGTCTAATAAATCAGATTGTGTTTATAACCTTCTTTCATGTGTCATATTACTCATTGGT CAATTACTTTGACTGTTTAGTGAATCGTGATAAGTTATCTAACTGTTAAAGGAATAACTTTACAGACAATAAAGACGAAT GTGATTGGAACATTGAACATGCTTGGTCTCGCCAAGCGTGTGGGAGCAAGGTTGGCACCTTTTGTTTTTTCAATTTGATA ATGTAAACTGCTACCATCAGTCGGTTATACCGAGTTGTAATTTTAATGGACAGGATTTTGCTCACATCGACTTCTGAAGT ATATGGGGACCCTCTTATCCATCCACAACCTGAAAGCTATTGGGGCAATGTTAACCCTATCGGTAAATCCTCATCTCAAT CATAATGAAGCCAACTCTAATTTGGCCGAGTTTGGCATCATGTGTATGGAAAGAAACATTCTTGTCCCAAGTTTTGGCCT TGTCAATTACTTGCTTAGAGCGGTATTGTACTACTTGTTTTTACTGTTGAAACCCATAAGGGTACAGCTTAAGCATAAAA ACATATGTGCACACAGGAGTTCGGAGTTGTTATGACGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCACAG GCAGCATGGAATAGGTAATGCCATGTCTTTTTTTATCTTGTAATATCTTCACATTGATTGAGGGCATGCCCAGGACAAAT TTCACACCATTGTTATCTGACATTTATTTAACTTTGTGACAGAAATACGCATTGCAAGAATCTTTAATACATATGGACCA CGCATGAATATTGATGATGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGGTATATCCTTAAACTTATTGTGGG AAGATTGATATGTTGATAATTTTGCATGGTTTAATATACCAAACTGCAAGAGAACATTCATGCATTTCTGTAATCTAGTA AATAACAATTTATTCTGACTACAATAATTGTATGAATTATGTGCTCGATGAGCTTGCTGTTTATTTTCTAGGTCATTCAT GATTGGATTTAAATACCTGGATTTAATTGACCTCATTTTCTTTGTGTTACAGCGGTGAACCCCTAACAGTCCAAGTTCCA GGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGATATGGTATAAACAATACATGTCATGTATCTCACTGGTGTTTGTGT TGTGATTCACTTACTAGAGGGGATCTGAAAAAGGTTATACGTTTGAAATCTTCAGGTTGATGGCCTTATTCGTCTAATGG AAGGGGAAAACACTGGTCCAATCAACATCGGGAACCCAGGTTATATTACAACTGAGGCCCCTGCGCATTAATTTTTCTAT CAATTGCTAATGAGATTGTATTTTGTTCTTCCAGGTGAGTTTACAATGATTGAGCTTGCAGAGAATGTGAAAGAGGTTAG TTGTATGCCATGTCAATTCTTTGAGAATCCCAGTGCCAGTGTGGTTATATTCTTAACAAAAGTTTGTAGAAAGGAACTCT TTGATCCCAACTTATGGGTTATTTTTCTGAGAGGGGTTGTGTTTGTGCAATATGGAGTTAATAAAGTAATGGAAACACAC ACACACTATTTGGCTGAAGAAACTCACGGTTATGCTTTTGGGTGAATACACATAAATGATTTAATAATTTATACCCCTCA CGCAAAAAGCACATTGGGCTTGAAGCAAGCATGGACAATGCATAAGCCCAACTATCTTGTGCTGAAATTCAATTTTTTAA TAGAAAAATGGAGACCAACAAGGATTGAACTCTATACCATTTGGTCATAGAGGCTCTAATACCATGTTCCGGACCAACTA TCCCAAAAGCTTAAACTGTATTGTTAAGGTTTTATGTGAAATAGAAAGTTAGCTAATGCTTTATGTGTGATTTTGCAGCT TATTAATTCAACAGTGGAGATAAAGATGATTGAGAACACTCCCGATGATCCTCGTCAGAGAAAACCAGACATAGCAAAAG CAAAGGAGTTGCTAGGCTGGGAACCAAAGGTCAAGTTGCGCGACGGCCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGG CTCGGGGTTGCCAAGAAAAACTAA
CDS sequence (LotjaGi2g1v0371000.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACGGATTCTTCTAATGGAGACCATCAGAAAGCAGGAAAGCAACCTCCTTTGCCATCTCCCTTGCGTTTCTCCAA GTTCTTTCAGGCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGATAGATTGATGG AAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTTCTTCACTGGATCAAAAGACAACCTTAAGAAATGGATTGGTCAT CCAAGATTTGAGCTGATTCGTCATGATGTCACAGAGCAACTGCTGGTTGAGGTTGATCAAATCTACCATCTTGCATGCCC AGCATCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACGAATGTGATTGGAACATTGAACATGCTTGGTC TCGCCAAGCGTGTGGGAGCAAGGATTTTGCTCACATCGACTTCTGAAGTATATGGGGACCCTCTTATCCATCCACAACCT GAAAGCTATTGGGGCAATGTTAACCCTATCGGAGTTCGGAGTTGTTATGACGAGGGCAAGCGTGTGGCAGAAACTTTGAT GTTTGATTATCACAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTTAATACATATGGACCACGCATGAATATTG ATGATGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGCGGTGAACCCCTAACAGTCCAAGTTCCAGGAACTCAA ACTCGCAGTTTCTGCTATGTCTCTGATATGGTTGATGGCCTTATTCGTCTAATGGAAGGGGAAAACACTGGTCCAATCAA CATCGGGAACCCAGGTGAGTTTACAATGATTGAGCTTGCAGAGAATGTGAAAGAGCTTATTAATTCAACAGTGGAGATAA AGATGATTGAGAACACTCCCGATGATCCTCGTCAGAGAAAACCAGACATAGCAAAAGCAAAGGAGTTGCTAGGCTGGGAA CCAAAGGTCAAGTTGCGCGACGGCCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTCGGGGTTGCCAAGAAAAACTA A
Protein sequence (LotjaGi2g1v0371000.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNFFTGSKDNLKKWIGH PRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQ TRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINSTVEIKMIENTPDDPRQRKPDIAKAKELLGWE PKVKLRDGLPLMEEDFRLRLGVAKKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 21 | 21 | - | – | |
PANTHER | 2 | 346 | 345 | 3.6E-234 | – | |
PANTHER | 2 | 346 | 345 | 3.6E-234 | – | |
SUPERFAMILY | 28 | 337 | 310 | 6.21E-89 | ||
CDD | 33 | 337 | 305 | 0.0 | – | |
Gene3D | 34 | 323 | 290 | 1.3E-109 | – | |
Pfam | 36 | 330 | 295 | 1.2E-53 | ||
Gene3D | 215 | 329 | 115 | 1.3E-109 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0371000.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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