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LotjaGi2g1v0371000.6

Overview

Field Value
Gene ID LotjaGi2g1v0371000
Transcript ID LotjaGi2g1v0371000.6
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description UDP-glucuronate decarboxylase protein 6; TAIR: AT2G28760.4 UDP-XYL synthase 6; Swiss-Prot: sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5; TrEMBL-Plants: tr|I3S6E2|I3S6E2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0371000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:86782735..86787774) extracted from Lotus japonicus Gifu genome v1.2.

CTCGGTGGGAAAAAATCAAACGTGGCAGCCAAAACAGTGAGTCACAAATCTTTTATAGAGTAAAGACAGACAGCTCATTG AGATTGAGGTGGAAGAGTCAAGCATGTTCTGGTTTTAAGTAACACACTTCTCCTGTTCTCTTCAAAATCACTCAACTCCT AGATCTCAGTGCTACTGTCCCGTAAGCCCCCTTGTACTAAATCCCACATTTTTCTCTATCTAACTATTCTATACCTATAA AAGATTCAATTTTTACTTCTGGGGTGTTTGCTTTTTTTCGAAGTTTCGTGTGGTGCCAAACCTTTCTGGTTGTCTTGGAG CTTTCATGATGGTTTTCAACTTTCCGTGAGATTGAAGGCTCCCAAAATCATTTTTTGTTTTTTTTTTAATGTTTGATTAG TTTCTTGGTGGAAAATCCTAATTTTTTGCATTTGGTGGGAGAATTTTCAAGTTCTGGATCTTCTTTCTCCTATAAATGGT GCTCTGATTGTACATCATTTTCACCATAACTGTGATTTGGGGTTCTGGTTTTCATCATTTCTTTGCTTGATTTTGTAGGA TTTTCTGACTCACCTAATATATGTGTATATCATCATGATGGGGAAGTGATTTTGACTGTTTGAAAATTGGTTCAGGGTTT GAGTTTCTGAGGCTTTGACAATGGCAACGGATTCTTCTAATGGAGACCATCAGAAAGCAGGAAAGCAACCTCCTTTGCCA TCTCCCTTGCGTTTCTCCAAGTTCTTTCAGGTAAACTCTTGCATTGCATTCTGCATGCAACATTTTGATTCCGATTGTTG TCTGGATCCTGTTATAAGGATTTCTTGTTGATTCACTTTTGATTTTGCTTTTATTCCTTACAACAGGCCAATATGAGAAT TCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGATAGATTGATGGAAAATGAAAAAAATGAGGTTAGTA TAGTTGATATCTTTCTGCTCATAGTGTTAGAGCTAATCAGTGATTTAACTTGTGCAATAAAATCTTGGTATGATATGTGA CCGTGTGTTTGTCTAATCAGGTCATTGTTGCTGATAACTTCTTCACTGGATCAAAAGACAACCTTAAGAAATGGATTGGT CATCCAAGATTTGAGCTGATTCGTCATGGTAGAAATTTATTTTCTCTACTGCAATTATCCCTTGTGTGATTTTATTCCTC ATAAGATGAAACTTGAGGTTAAAATTCCTGCCTTTTCTTCCCACCTTGTGTTAGAAATATAATGTAAAACAATTATGCGT CCTTTACCTAACAGTTTAAGCTTTTGGGATAGTTGGTTCATGACATGGTATTAGACCCTCTTTGACCAAGTTGAATTTCA GCACTAGGTAGGGTGGTCTGTGCATTGTCCAAGCTTCAAGCCCAGTGGGTGAGGGTGCGTGTTGGAAATATAATATGAAA CCATTCATTTGTCTTATACACAACAACTTAAGCTTTTGGGATAGTTGGTTCATGACACCTTGTAGTATGTGTATGGCATG TTAAGTCCAGAATGTGATGGTCTTCAACACAATGAAGGACCATGCAACAGAAGCTTGTTGGTCTTTAAATAAGATATTAA ACTGAAGGATATATCACTTTTCTCCATCAATGAACTATATAGAGTAGCGAGCTATATGGTATTGTTCAAGTGCAAGACAC AACAGAACAATAATGCTATCATATGCACTGAGTTTCTCTGTGTTTCCTTATGCCTGCTAATTTGTTTACTTTTTCAATTA GATTGGACCTAATTTTCTTTTCCCCTTCGCAGATGTCACAGAGCAACTGCTGGTTGAGGTTGATCAAATCTACCATCTTG CATGCCCAGCATCTCCAATTTTCTACAAATACAATCCTGTAAAGGTTGGGTTTTCACAGTCTGGTTTTGTATTAATATCA GTTAATATGGTCCTGTGAACTGTCTACTAGGCTTATTCCTTACTCACAGCTAGGCACAAAAGTAACTTGAATCACCCTTC CCCTAGGTTCCTCCTTATATTTGTTCTGCTGATTTGTCATGAGGATTTCATGCATGTTGTTATGATGATTCAAGTTGTTT GTAGGTCTAATAAATCAGATTGTGTTTATAACCTTCTTTCATGTGTCATATTACTCATTGGTCAATTACTTTGACTGTTT AGTGAATCGTGATAAGTTATCTAACTGTTAAAGGAATAACTTTACAGACAATAAAGACGAATGTGATTGGAACATTGAAC ATGCTTGGTCTCGCCAAGCGTGTGGGAGCAAGGTTGGCACCTTTTGTTTTTTCAATTTGATAATGTAAACTGCTACCATC AGTCGGTTATACCGAGTTGTAATTTTAATGGACAGGATTTTGCTCACATCGACTTCTGAAGTATATGGGGACCCTCTTAT CCATCCACAACCTGAAAGCTATTGGGGCAATGTTAACCCTATCGGTAAATCCTCATCTCAATCATAATGAAGCCAACTCT AATTTGGCCGAGTTTGGCATCATGTGTATGGAAAGAAACATTCTTGTCCCAAGTTTTGGCCTTGTCAATTACTTGCTTAG AGCGGTATTGTACTACTTGTTTTTACTGTTGAAACCCATAAGGGTACAGCTTAAGCATAAAAACATATGTGCACACAGGA GTTCGGAGTTGTTATGACGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCACAGGCAGCATGGAATAGGTAA TGCCATGTCTTTTTTTATCTTGTAATATCTTCACATTGATTGAGGGCATGCCCAGGACAAATTTCACACCATTGTTATCT GACATTTATTTAACTTTGTGACAGAAATACGCATTGCAAGAATCTTTAATACATATGGACCACGCATGAATATTGATGAT GGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGGTATATCCTTAAACTTATTGTGGGAAGATTGATATGTTGATA ATTTTGCATGGTTTAATATACCAAACTGCAAGAGAACATTCATGCATTTCTGTAATCTAGTAAATAACAATTTATTCTGA CTACAATAATTGTATGAATTATGTGCTCGATGAGCTTGCTGTTTATTTTCTAGGTCATTCATGATTGGATTTAAATACCT GGATTTAATTGACCTCATTTTCTTTGTGTTACAGCGGTGAACCCCTAACAGTCCAAGTTCCAGGAACTCAAACTCGCAGT TTCTGCTATGTCTCTGATATGGTATAAACAATACATGTCATGTATCTCACTGGTGTTTGTGTTGTGATTCACTTACTAGA GGGGATCTGAAAAAGGTTATACGTTTGAAATCTTCAGGTTGATGGCCTTATTCGTCTAATGGAAGGGGAAAACACTGGTC CAATCAACATCGGGAACCCAGGTTATATTACAACTGAGGCCCCTGCGCATTAATTTTTCTATCAATTGCTAATGAGATTG TATTTTGTTCTTCCAGGTGAGTTTACAATGATTGAGCTTGCAGAGAATGTGAAAGAGGTTAGTTGTATGCCATGTCAATT CTTTGAGAATCCCAGTGCCAGTGTGGTTATATTCTTAACAAAAGTTTGTAGAAAGGAACTCTTTGATCCCAACTTATGGG TTATTTTTCTGAGAGGGGTTGTGTTTGTGCAATATGGAGTTAATAAAGTAATGGAAACACACACACACTATTTGGCTGAA GAAACTCACGGTTATGCTTTTGGGTGAATACACATAAATGATTTAATAATTTATACCCCTCACGCAAAAAGCACATTGGG CTTGAAGCAAGCATGGACAATGCATAAGCCCAACTATCTTGTGCTGAAATTCAATTTTTTAATAGAAAAATGGAGACCAA CAAGGATTGAACTCTATACCATTTGGTCATAGAGGCTCTAATACCATGTTCCGGACCAACTATCCCAAAAGCTTAAACTG TATTGTTAAGGTTTTATGTGAAATAGAAAGTTAGCTAATGCTTTATGTGTGATTTTGCAGCTTATTAATTCAACAGTGGA GATAAAGATGATTGAGAACACTCCCGATGATCCTCGTCAGAGAAAACCAGACATAGCAAAAGCAAAGGAGTTGCTAGGCT GGGAACCAAAGGTCAAGTTGCGCGACGGCCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTCGGGGTTGCCAAGAAA AACTAAGCTTGGTTTTTTTCACTCCTTATATCATTTCATAATGGATGTTTTGATGGTAACTGGAATAAGTCTGTTGGTGC TAGATGTTTCGTAGAAAATTATGGAGAGGAATTTTGGAAGTTGCTACCATAAAGGCAACTTGAACTTGGTTTTTAATTGG TACAATTCTACAATATGATTTCTTCTTCCCCAACGTCCTCTTGGAAATGCTATTGTGAATTGAGTTGTAGTTGAAAATTC GTATTGCTTTTTGAACTATTGTTGTAAATTGCAGAGGACTGCTTCTGCATAATAAAGTACATGTAAAGTGCTTCTCCATT CTTCACTTGGCAACTTCTTTCAGTCTTCCTTTTAAAGTGTTTATCCTATCTTTTTTTTTTTTGTGCTTTATTACTATCCA ATCAGTCTTGTTCTATTAAATTTGGTCGAATCTAAAGCAGTTTGGATTAGACTAGTTTTATGATTTTAGTCTTCTAGAGT CTAGACTACTTTTTCTTTGAGTTTGTACTTTTTTTTTTTGTTACCAAACATTCAATCCATACAACATTGCACGTAAATAG ATTTCAAAAAAACATTGCACGTAAATGTTTTCGCATATTTGAATTGATCGATTTTGAAGGAAAATTATGAAGAGAAAAAC TATCTAACCCAATTTCCCATATTGGTTTGATTTCGATTTTTGTTATGTTTATGTTGTGTTTTATGGTTCAATTGAGTTTG GTTCCAATCATTCTAAAAGCGTTATGGAGGGTTGATTTTCCAAGTGTTGGATTTGCTTTAAGTGTTGATGGAGATAATGG AAGAATGATGAATGTTTATGGAAATAGTGGATGATTTTGAGTGAGGAATTAGAGAGATATTAGGAATTTGTGATCAGGAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0371000.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACGGATTCTTCTAATGGAGACCATCAGAAAGCAGGAAAGCAACCTCCTTTGCCATCTCCCTTGCGTTTCTCCAA GTTCTTTCAGGCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGATAGATTGATGG AAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTTCTTCACTGGATCAAAAGACAACCTTAAGAAATGGATTGGTCAT CCAAGATTTGAGCTGATTCGTCATGATGTCACAGAGCAACTGCTGGTTGAGGTTGATCAAATCTACCATCTTGCATGCCC AGCATCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACGAATGTGATTGGAACATTGAACATGCTTGGTC TCGCCAAGCGTGTGGGAGCAAGGATTTTGCTCACATCGACTTCTGAAGTATATGGGGACCCTCTTATCCATCCACAACCT GAAAGCTATTGGGGCAATGTTAACCCTATCGGAGTTCGGAGTTGTTATGACGAGGGCAAGCGTGTGGCAGAAACTTTGAT GTTTGATTATCACAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTTAATACATATGGACCACGCATGAATATTG ATGATGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGCGGTGAACCCCTAACAGTCCAAGTTCCAGGAACTCAA ACTCGCAGTTTCTGCTATGTCTCTGATATGGTTGATGGCCTTATTCGTCTAATGGAAGGGGAAAACACTGGTCCAATCAA CATCGGGAACCCAGGTGAGTTTACAATGATTGAGCTTGCAGAGAATGTGAAAGAGCTTATTAATTCAACAGTGGAGATAA AGATGATTGAGAACACTCCCGATGATCCTCGTCAGAGAAAACCAGACATAGCAAAAGCAAAGGAGTTGCTAGGCTGGGAA CCAAAGGTCAAGTTGCGCGACGGCCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTCGGGGTTGCCAAGAAAAACTA A
Download CDS Sequence

Protein sequence (LotjaGi2g1v0371000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNFFTGSKDNLKKWIGH PRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQ TRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINSTVEIKMIENTPDDPRQRKPDIAKAKELLGWE PKVKLRDGLPLMEEDFRLRLGVAKKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR43078
2 346 345 3.6E-234 –
PANTHER
PTHR43078:SF13
2 346 345 3.6E-234 –
SUPERFAMILY
SSF51735
28 337 310 6.21E-89
IPR036291
CDD
cd05230
33 337 305 0.0 –
Gene3D
G3DSA:3.40.50.720
34 323 290 1.3E-109 –
Pfam
PF16363
36 330 295 1.2E-53
IPR016040
Gene3D
G3DSA:3.90.25.10
215 329 115 1.3E-109 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0371000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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