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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036389
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.007s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0026400.1
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0026400 LjG1.1_chr1 3191603 3194255 +
3 domain predictions
2 GO terms
LotjaGi1g1v0372300.1
n.a. Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300 LjG1.1_chr1 85036555 85063016 +
3 domain predictions
2 GO terms
LotjaGi1g1v0791500.1
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A151TUM2|A0A151TUM2_CAJCA Endoribonuclease Dicer isogeny 2a; Found in the gene: LotjaGi1g1v0791500 LjG1.1_chr1 136355914 136362497 +
3 domain predictions
2 GO terms
LotjaGi1g1v0798000.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136814701 136827226 -
3 domain predictions
2 GO terms
LotjaGi1g1v0798000.2
n.a. Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136817437 -
3 domain predictions
2 GO terms
LotjaGi1g1v0798000.3
n.a. Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136817825 -
3 domain predictions
2 GO terms
LotjaGi1g1v0798000.4
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826448 -
3 domain predictions
2 GO terms
LotjaGi1g1v0798000.5
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826484 -
3 domain predictions
2 GO terms
LotjaGi2g1v0407000.3
n.a. Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 LjG1.1_chr2 90431555 90437947 -
3 domain predictions
2 GO terms
LotjaGi2g1v0407000.5
n.a. Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 LjG1.1_chr2 90432228 90434351 -
3 domain predictions
2 GO terms
LotjaGi3g1v0025300.1
n.a. Mini-ribonuclease 3; TAIR: AT1G55140.1 Ribonuclease III family protein; Swiss-Prot: sp|P74327|MRNC_SYNY3 Mini-ribonuclease 3; TrEMBL-Plants: tr|A0A0S3SFS1|A0A0S3SFS1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0025300 LjG1.1_chr3 2755899 2766174 +
3 domain predictions
2 GO terms
LotjaGi4g1v0097200.1
n.a. Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A0S3R594|A0A0S3R594_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0097200 LjG1.1_chr4 13153384 13157564 +
3 domain predictions
2 GO terms
LotjaGi4g1v0097200.2
n.a. Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|A6YSL1|RNC1_MAIZE Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|G7JCT8|G7JCT8_MEDTR Ribonuclease III domain protein; Found in the gene: LotjaGi4g1v0097200 LjG1.1_chr4 13155367 13157236 +
3 domain predictions
2 GO terms
LotjaGi4g1v0239100.1
n.a. Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239100 LjG1.1_chr4 55535775 55537110 -
3 domain predictions
2 GO terms
LotjaGi4g1v0239400.1
n.a. Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 LjG1.1_chr4 55601121 55604330 +
3 domain predictions
2 GO terms
LotjaGi4g1v0239400.2
n.a. Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 LjG1.1_chr4 55601121 55604330 +
3 domain predictions
2 GO terms
LotjaGi4g1v0239400.3
n.a. Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 LjG1.1_chr4 55601178 55603650 +
3 domain predictions
2 GO terms
LotjaGi4g1v0283700.1
n.a. Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp|P84634|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr|K7MKZ2|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700 LjG1.1_chr4 65582409 65609480 +
3 domain predictions
2 GO terms
LotjaGi5g1v0164100.1
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164100 LjG1.1_chr5 42020292 42022507 -
3 domain predictions
2 GO terms
LotjaGi5g1v0164100.2
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164100 LjG1.1_chr5 42020342 42022488 -
3 domain predictions
2 GO terms
LotjaGi6g1v0269600.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406349 58420346 +
3 domain predictions
2 GO terms
LotjaGi6g1v0269600.2
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406481 58420451 +
3 domain predictions
2 GO terms
LotjaGi6g1v0269800_LC.1
n.a. Ribonuclease 3-like protein 3; TAIR: AT3G03300.4 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A1J7HMM6|A0A1J7HMM6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269800_LC LjG1.1_chr6 58429035 58434256 +
3 domain predictions
2 GO terms