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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PR00413
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.021s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0325449.1
n.a. PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3-like [Cicer arietinum] gi|502108258|ref|XP_004493428.1| chr0 170051901 170055764 +
2 domain predictions
1 GO term
Lj1g3v4790660.1
n.a. PREDICTED: NHL repeat-containing protein 2-like [Glycine max] gi|356571070|ref|XP_003553704.1| chr1 57675826 57680106 +
2 domain predictions
1 GO term
Lj1g3v4790660.3
n.a. PREDICTED: NHL repeat-containing protein 2-like [Glycine max] gi|356571070|ref|XP_003553704.1| chr1 57675826 57695962 +
2 domain predictions
1 GO term
Lj2g3v0593010.1
n.a. PREDICTED: pseudouridine-5'-monophosphatase-like [Cicer arietinum] gi|502142477|ref|XP_004504977.1| chr2 7998990 8003348 +
2 domain predictions
1 GO term
Lj2g3v0593010.2
n.a. PREDICTED: pseudouridine-5'-monophosphatase-like [Cicer arietinum] gi|502142477|ref|XP_004504977.1| chr2 7999007 8003348 +
2 domain predictions
1 GO term
Lj2g3v1280040.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein [Medicago truncatula] gi|357486883|ref|XP_003613729.1| chr2 20572580 20574397 +
2 domain predictions
1 GO term
Lj2g3v1280040.2
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein [Medicago truncatula] gi|357486883|ref|XP_003613729.1| chr2 20572580 20576567 +
2 domain predictions
1 GO term
Lj3g3v2849040.1
n.a. PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max] gi|356546960|ref|XP_003541887.1| chr3 35176820 35181322 -
2 domain predictions
1 GO term
Lj3g3v2849040.2
n.a. PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max] gi|356546960|ref|XP_003541887.1| chr3 35176820 35181322 -
2 domain predictions
1 GO term
Lj6g3v1392520.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein [Medicago truncatula] gi|357449159|ref|XP_003594856.1| chr6 16613796 16617243 -
2 domain predictions
1 GO term
Lj6g3v1414770.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein [Medicago truncatula] gi|357449159|ref|XP_003594856.1| chr6 16761336 16764994 +
2 domain predictions
1 GO term
LotjaGi1g1v0666900.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT2G41250.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q5M969|NANP_RAT N-acylneuraminate-9-phosphatase; TrEMBL-Plants: tr|I3T9E2|I3T9E2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0666900 LjG1.1_chr1 122919412 122923647 +
2 domain predictions
1 GO term
LotjaGi1g1v0748400.1
n.a. NHL repeat-containing protein 2; TAIR: AT1G56500.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2; TrEMBL-Plants: tr|I1NBR0|I1NBR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0748400 LjG1.1_chr1 132085084 132104635 +
2 domain predictions
1 GO term
LotjaGi1g1v0748400.2
n.a. NHL repeat-containing protein 2; TAIR: AT1G56500.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2; TrEMBL-Plants: tr|I1NBR0|I1NBR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0748400 LjG1.1_chr1 132085392 132102731 +
2 domain predictions
1 GO term
LotjaGi1g1v0764100.1
n.a. Riboflavin kinase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|A0A0S3QZS5|A0A0S3QZS5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0764100 LjG1.1_chr1 133684580 133689684 -
2 domain predictions
1 GO term
LotjaGi1g1v0764100.2
n.a. Riboflavin kinase/fmn hydrolase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|I1KLD6|I1KLD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0764100 LjG1.1_chr1 133684580 133689684 -
2 domain predictions
1 GO term
LotjaGi1g1v0764100.3
n.a. Riboflavin kinase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|A0A0S3QZS5|A0A0S3QZS5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0764100 LjG1.1_chr1 133684905 133689590 -
2 domain predictions
1 GO term
LotjaGi2g1v0304800.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT1G14310.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9CYW4|HDHD3_MOUSE Haloacid dehalogenase-like hydrolase domain-containing protein 3; TrEMBL-Plants: tr|I1J5P8|I1J5P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304800 LjG1.1_chr2 77816909 77820763 +
2 domain predictions
1 GO term
LotjaGi2g1v0416700.1
n.a. Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGY1|I1LGY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416700 LjG1.1_chr2 91452318 91455316 -
2 domain predictions
1 GO term
LotjaGi2g1v0416700.2
n.a. Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGY1|I1LGY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416700 LjG1.1_chr2 91452318 91455316 -
2 domain predictions
1 GO term
LotjaGi3g1v0450700.1
n.a. Riboflavin kinase/fmn hydrolase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|K7M2J5|K7M2J5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0450700 LjG1.1_chr3 86422681 86427444 -
2 domain predictions
1 GO term
LotjaGi3g1v0450700.2
n.a. Riboflavin kinase/fmn hydrolase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|K7M2J5|K7M2J5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0450700 LjG1.1_chr3 86422681 86427444 -
2 domain predictions
1 GO term
LotjaGi4g1v0049600.1
n.a. Riboflavin kinase; TAIR: AT4G21470.1 riboflavin kinase/FMN hydrolase; Swiss-Prot: sp|Q84MD8|FHYRK_ARATH Bifunctional riboflavin kinase/FMN phosphatase; TrEMBL-Plants: tr|A0A151S8Q7|A0A151S8Q7_CAJCA Riboflavin kinase; Found in the gene: LotjaGi4g1v0049600 LjG1.1_chr4 6039120 6043988 -
2 domain predictions
1 GO term
LotjaGi6g1v0244600.1
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT5G44730.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q5E9D6|HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3; TrEMBL-Plants: tr|I3TAF4|I3TAF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244600 LjG1.1_chr6 55726332 55730292 +
2 domain predictions
1 GO term
LotjaGi6g1v0244600.2
n.a. Haloacid dehalogenase-like hydrolase domain-containing protein 3; TAIR: AT5G44730.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q5E9D6|HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3; TrEMBL-Plants: tr|I3TAF4|I3TAF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244600 LjG1.1_chr6 55728034 55729758 +
2 domain predictions
1 GO term