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LotjaGi2g1v0448500.2

Overview

Field Value
Gene ID LotjaGi2g1v0448500
Transcript ID LotjaGi2g1v0448500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease P protein subunit p29; TAIR: AT2G43190.1 ribonuclease P family protein; Swiss-Prot: sp|Q9CR08|RPP29_MOUSE Ribonuclease P protein subunit p29; TrEMBL-Plants: tr|I1LG21|I1LG21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94225722..94230907) extracted from Lotus japonicus Gifu genome v1.2.

CTTCACCATTCCTGTCTCACACAAAGCAAGCTCTGCCGGAGTGACCGAACAACTACCTCCGCTGCTCGCCGTCGCTACAA GGGTTAGCTGATTGTTTTGGTTTCTTCTCTCAAATTGGATACAACTCACCTTTGATTCACGTTGGTGTTGACTTCATTGA AGTCTTCTCCGTTTACGGTATGTGTTCTAATCTGCGACTCCCTTGGGTTGTGTCTCTTCTAGTTCTGATTTGCATTGTTT TAAGGGCTTCGCTTTCATGCAGTATTTCTCTTCTTTCGTGCTTTCAGTCTTGGTTTCTTATATTTTGTAACCTTAGAAGT AGAACGAACTGCATATGGTATGAGTAACTATTTCATTGTCTATCTTTGGTTTTATGCTTTCATTAGTGGGAGGTGTCTTT GTTCTGTTTGATGAATTGACAATAATGTGGATGAATTACATTATGCTCCAGCCTGCAAATTTCTTGATTTCTTTGGTTAA TAGTGGTATTTTGATCCATGTTTTTACTTCTGAATAAATGGTTGAGAATGTGCTTCTTATGACAGCTTGAGCATTGATGT TTGATGCCATCTCATCAGTGTAACATCAATCTAAGTCTGTTACATATGTTGTAGATAAAGTAGAAATAATTTGAAACAGC ATTTTATTTAATTACTGTTTTGGAATCTTATAAACAGGTGGCGGCATTGAATATATGCATTTCTTGGTGTTGGTTTTCTT CATATTTTCTTGTTACAGAATGCCCCCTCGTACTCTGACTTCAACTAGTTATCTCTTAACACTTGTCCTTATACTGTCCT AACTCCTAATGATGCATCCTAACATAATATTTTTTTCTCTGCATTCATTCTACATTTCGATGTCTGAGAAGAGCTTATGA ATGAAATGATGCTATCAGTTTTCTTTGAAGTTATTATATTTTGATATTAGCAGTTACTTATTCAATAGATTGTTTTCTCA TGTTGAATGAAGGTAGGTGTCTATGGCGGCAGATTCAAGAAAACGCACATTGGAGGCTTTGGAGAGAAGAATTGCTGTTG CCAAAAATGATCTTCTCTTAAAAGAAAAGAAGAGCAAAAAAGATATAAAGGATGATGGGAAACCAACCATTCCCGCAGTT TCTATTTCTAATGGTTCTTCCTTACATTGTCCATCATCAGATGCAAACAAGAAAGGTAAGTTAACTTTCAATTTTGTTGG TTTTTGTTATTTTCTTTTTCTTTTCAAAGCTGGTAAATAATTTATTACACATTCACCCATGTTAATTTTTTTAGTATCAT AAATAAATAATGTCTTAGGAAGTATTTCCTCTTCTCACCTTGCATTTTATGCAATACATTTCCATCCTGTCTGGAGGAGT GTAAAATTTTATCTATTTATTGTTAATTTAAGAATTCTGCATTTGTAATATGTATATATGTAAATATCTTGTTTAACATT CAGCTGAGATGCTTTTGTTTCTTCCTTTTTAGGGAATATCAGTTTTTATGGTCATGCCACTTCGCAAGGTACTAGGCAGT CTGTGACTTCCCTTTAGTATATAAGATATTTGACTTTTTTTTTTTCATTTTGAGTTTTGAAGGTTTTCTGTGAATCATAT AGTATATATATAACTCCAATATATATGGGCTAAATGAAGTTAAAATTCATTTTCAGACATTGAAGATGGTCCTGCATATG ATCAACTTTCTCTACCTATAAATGAAAATCTGCTGACAACCAATGAAGAGGTATTTTTTGCTTGGAGCACATGTTATGGC CAAGAATAATAAAAAGCCTAATTCAATCATTTGATGATTAAAATTTCTATTATAATTCCATAAAATCAATAATTAATCTC TTCTGAAAAAATATTTGATATAAGGAGAAATTTATGGATCTTAAAAAACAACTCCTTAACCAATTAACAACCAGGGAAAG CTGCAATATGAAGGTCTCCTGCTCTTGATCTAACCAAGTTGTGGAAGTTTCTTTTTCTTCAGTTTATAAAGATGTATATT TTCCCATAACTAATTTAAATAGTTGAACTTTCTTTATACTTTAATTTCAAAGATTATACAGTTACCTATCTGTTCTCCAT TGACTTGTATTCTGCAGTTTTCTGCTGAAAGAGGAGGTTCAATTATTGGAATGTTGCACGAGCTTCTTCAGAAGGGAGAT GCAGCCCCAAAGTACATGCAAGGATCTAAAAACATGAAAATTGACAACTGGATCCTTCTTGATAATTTTGTACAAGGGCG TACAGTTTCTTCTGGTTCTCAAACAAGGGCTTTGCGAATCCATTCAAAACGCTCTAAGAAACACATGTCCATGAAACAAC ACAAAAAGTATGGATCATTGGATCTTCCGCAAGAATTCCATAAGTAAGTTTATTGTCTCTAAACTACACCTCTTGGTAGT CTGTTGATCCTTATTGTTACTGCTATAGCTCTGCAGTTGTGGTAGTGTACATTGTCTGTTGTTGTGAGGAATCTTTCATT TTTCACCTTCCGTTTAAGGATTCTTATGTTTATGCTAGGGACAAATAATATTTTATACAGCATATTCTATTATAGTTGAT AACTTTTTTACAATGATATTCTTTTTGTTCCCTACTCATTGTTTAATTTGATTGCAGGTTTGATATCTTCAAGCCAATGC ATGAAATGTGGAAAGACTATATAATGCAGCTTCTTAAATCCACCGGGTATTATTGCTGCTGCTGTTGTGGTTGTTATGGT TATTGTTATTGGTATTTCATATTTGTCCAATAAAGAGAGGAAGAAAGATAAAAGATGGTTATAATCATTTATATTTTTCT TCTCTTATGGCTTTAATAACCATGGACCTGTTGAATATTCCAGGAAAAATCAATTGGCTCAATGTCTCCTTGTTGCAGAT CTACATGGTGCTAATATTTTAGGTCCGAACACACTTTTCCCCCCCCTCCGTTTAATGAGTTCACCAATGATAATCTTATA GTAACAAATGCTACAACATTTTATATTCCTGATACTTTTACTTTCAATTTTGAGATGATCTAGGTATGACTACATTTTGC AAAGACAGTTATTCTGCAATTGCTTGGGTGTTTGTTTATTTGGCCAAAGATGCTTATCTCTTAATGTGCAATTCTTTTGT GTGCATCCGAAAGGTGTTAAAATTGTTGTTGTTACTGAACTTGAATGGTCAAAAGCCTATTTTTGGTGTTTATAGAAAGA GTTAATGATGTTCAGTAGGTTTGGACATGCAGTTGCAGGAAACCAGTTTCTATTTTGGCAATAAGTTCAATAGTAAAGAT GAGCTTGCTGCCTCCCTTTCTCTCTCCGGCCTCTGAGATCCCCTCTGGCTTGCATAACCTTAATATGGTCCACACATTTG TAACTCAAAAAAAGAAAATGTTGCTAGAACTTTAATAGAATGTATTTTTTATTTAAGTTAATCAAATTTTTAAAGATGTG TTTCTATTATGAGTGTCGTTTGATATTAGTGTGGCATATTTTTTGACCAAACTTGGTATTTCCAAATTCTAAATATAAGG ACCATGAAAAGAGTTATGTATATATGTGCTTCTTATCATTAACAGTACTCTGCCAATCTATGTTTTGCAGTTGTGGAGTG TAAAATCAAACATTTGACTGGAACTTGTGGCATCATGATTCGTGAAACTTCTGAAGCATTTGGGATAATTACCGAAGATA ATAAATTTCGAGGTAATCCTTGACATTCAAAGTAGAAACTGTCCTGGCATTACCAGAGTAGTTAAATGTTTAAATGAATG TGCACAGTCGTTTTTGAATGCTTTTCTTATATTTACTAGTGACCACAGGGCAAGCGTGACTATTGTCACTCTCATAAAAT ATTGTTTGGCTGGGGTTCTTGTTCGATCTTGTTAGTTTGTGTCCCTTTAGGTTATATCCTCGGTTCTGTAGGAAAACCTG AAGTTTTTCCAACAGGGAATGAGATTTGGTGCTGATAATATGTTTTGTACGAAGATCTGAAACTGTTTTAGAGTAAAACA TTGTTATATTTCTAATTTAACATTGAAAATTGGATTTTAATTAATAATTCTATTTACAGCTGTTTCTAAATCACATTTCA ACTAGAATCCTCCAAAGTTTTAGCTAGATCAAAAATTGATCTTCTCTTTCAGTACAACCAATTGAAATTCTGGGTATTTG AGTAATTATGCCATAAAATGATTTTTCACTTTGATCTGGAATCTCTTTATTATATCCTCTTTTCAAACCTTTGATGACCA AATACTTTCTATTTGGTAACTTGCAGTTGTTCCCAAAACGGTTTCTGTATTTGTATTCCAAGCTGATTGCTGGAAAGTCA CTATGCACGGAGATAAACTCAGTTCAAGAAAGGTCGGATTATGATATTAGTGATGATCCTTCAATTGTTAAGTAACATCT TCATCCTTTGTAAGTTCTTTTGTATAAGGTAGTCTAAAATTTCCATTTGCATGCATGTATCTGTAATCAGTCATCAGAGA AACAATAAGTGGATGGAAAGGGGACTGTTGTAACTCTTTAACCACACGTTGAAAAGATAAATAAAATGCCGTGCCAATAG AAGCAGTTTTTCTATCTTTAAACTCCTATTATGTTCTAAATTCAAAAAAAAAAAAAAAAACTCCTATTATGTTCAATTTA TGAGAGGTGTATTTACTGTGGAGAATGTTGATAAGTATCTTTGGTTTGCATCTTTAATTTTGATTGATGTGCAATATGAT GCAATTTTATCTGACTTTTGTAACTCATGATTTGTTATTTCATTCTGACATAATCTGATCTCCCTTGTGGAAATTTTTGT AGTGGATGCCTAGACGTGCAGAAATAAACACTTCAAGTTGATGCAAGATATTCATTTGAAATGAATATCTCATGTTGACA TCCTGAAGCAAGTTGAACGCTACCATCAAATCTCAGCTGTCAGCTATGTTTGGTTCCTTACCAGTGTGTCAAACTACTCT CTTAATTTTTAACTTCTTTAACAGAGACCACTCTTAACGTTTACAAGAAAATTAAATATTTAAAATGAATCAGTCCACCA TATTTCAAATACTCAAATACACACATTTTCCTTAGTACCTCTTTTTCAAGGATTCCCAGTTAAATTATTGCAGCTTCTAA AAAAAATTTAAAAAATGTTGTATTTTGATACTCAATTATAAATACGGTCAATACCTAATGGCCATG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0448500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCAGATTCAAGAAAACGCACATTGGAGGCTTTGGAGAGAAGAATTGCTGTTGCCAAAAATGATCTTCTCTTAAA AGAAAAGAAGAGCAAAAAAGATATAAAGGATGATGGGAAACCAACCATTCCCGCAGTTTCTATTTCTAATGGTTCTTCCT TACATTGTCCATCATCAGATGCAAACAAGAAAGGGAATATCAGTTTTTATGGTCATGCCACTTCGCAAGACATTGAAGAT GGTCCTGCATATGATCAACTTTCTCTACCTATAAATGAAAATCTGCTGACAACCAATGAAGAGTTTTCTGCTGAAAGAGG AGGTTCAATTATTGGAATGTTGCACGAGCTTCTTCAGAAGGGAGATGCAGCCCCAAAGTACATGCAAGGATCTAAAAACA TGAAAATTGACAACTGGATCCTTCTTGATAATTTTGTACAAGGGCGTACAGTTTCTTCTGGTTCTCAAACAAGGGCTTTG CGAATCCATTCAAAACGCTCTAAGAAACACATGTCCATGAAACAACACAAAAAGTATGGATCATTGGATCTTCCGCAAGA ATTCCATAAGTTTGATATCTTCAAGCCAATGCATGAAATGTGGAAAGACTATATAATGCAGCTTCTTAAATCCACCGGGA AAAATCAATTGGCTCAATGTCTCCTTGTTGCAGATCTACATGGTGCTAATATTTTAGTTGTGGAGTGTAAAATCAAACAT TTGACTGGAACTTGTGGCATCATGATTCGTGAAACTTCTGAAGCATTTGGGATAATTACCGAAGATAATAAATTTCGAGT TGTTCCCAAAACGGTTTCTGTATTTGTATTCCAAGCTGATTGCTGGAAAGTCACTATGCACGGAGATAAACTCAGTTCAA GAAAGGTCGGATTATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0448500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAADSRKRTLEALERRIAVAKNDLLLKEKKSKKDIKDDGKPTIPAVSISNGSSLHCPSSDANKKGNISFYGHATSQDIED GPAYDQLSLPINENLLTTNEEFSAERGGSIIGMLHELLQKGDAAPKYMQGSKNMKIDNWILLDNFVQGRTVSSGSQTRAL RIHSKRSKKHMSMKQHKKYGSLDLPQEFHKFDIFKPMHEMWKDYIMQLLKSTGKNQLAQCLLVADLHGANILVVECKIKH LTGTCGIMIRETSEAFGIITEDNKFRVVPKTVSVFVFQADCWKVTMHGDKLSSRKVGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Coils
Coil
3 30 28 - –
MobiDBLite
mobidb-lite
30 57 28 - –
PANTHER
PTHR13348
75 296 222 1.1E-95 –
Gene3D
G3DSA:2.30.30.210
201 296 96 2.6E-13
IPR036980
SMART
SM00538
215 296 82 4.7E-4
IPR002730
Pfam
PF01868
221 295 75 5.7E-18
IPR002730
SUPERFAMILY
SSF101744
224 294 71 2.96E-17
IPR023534

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004540
Molecular function Ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0030677
Cellular component Ribonuclease P complex A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0448500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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