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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0026900 |
| Transcript ID | LotjaGi3g1v0026900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-hydroxyisobutyrate dehydrogenase, putative; TAIR: AT1G17650.1 glyoxylate reductase 2; Swiss-Prot: sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic; TrEMBL-Plants: tr|G7IUG9|G7IUG9_MEDTR Glyoxylate/succinic semialdehyde reductase; Found in the gene: LotjaGi3g1v0026900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2933666..2937139) extracted from Lotus japonicus Gifu genome v1.2.
ATAATGATTGATTTTGGCTTTAGAATCAAATATAGAAGGATTTCTAAACATGCACATACTTGTTCTCTATCCCACTCAAC TGCCTTGTTCTTTTTTCTCTGCTTTCAGTGATTGAGGCACCCGCACGGGTTGGTTTTTTGGGCATTGGAATCATGGGCTC CCCCATGGCACAAAATCTCTTAAAAGCTGGGTATGTATGTATCTATGCCTTCCTCATCATATCGCCCTTACCTTGATTTG TATCTATTTGTAAGGAGATAACTTAAAATGTTACTGAATTGAGAGAGCAATGTTAATTCATGTCACACATTTTTCATGCT TGTCTTAGTAGTAAGCGCTTTAAATTCAAGTTTTTTTGTCCATAGATTCCACTCTTGTTTCGGCTGAGTTGTAATTAATT ACTATGCCTTTACCTGTAACTGTAGTTCTCCATGTCCTGATTGATTCTCCTAACTTTTCTTGTTGTAGAATTGATCTGAC TGTTTGGAATAGGACCAAGAGCAAGTGTGATCCTTTAATCAGCTTGGGAGCAAAGTAAGTTTTTGATATTCAGGTTTCCA TATTTTTGTGTTTTGAGGACCATGATGGATCTTCACAGGGCGCAGCATTATTATTAAGTAGTTGTGCTTGTGCATCTGCG CACGATGCATACACTTGAAAACATGGAAGTGTGATACCTACATTTTATAAGACACATCAAGAGAAGAAATAATCTGTAAG TTTTGAAGTGTGTTTGAAATTCTATGATTCTGCAGATATAAATCATCTCCTGAGGAAGTAGCAGCATCTTGTGATGTCAC ATTTTCCATGCTTGCAGATCCTCAAAGTGCAGTGAGTATATTTCAGTATAGGTTGAAAAGCTAATAAATTAGTTCTGACT CTGAGCTAGTTATGCTTGTACTGTATCAGATGGATGTTGCTTGTGGGAAGCATGGAGCGGCAAATGGAATGGGTCCAGGA AAAGGGTTCTATATTCAAATTCAAATTTTCAAATTGCTTCCAGGATATTGCTGCAATTTTGACAAGTAACACTATTTGAA ATGGATATTTGACACTTTTGTATGTCAGATATGTGGATGTTTCAACTGTTGATGGGGACACTTCTAAATTGATTAGTGAG CACATAAAATCCACTGGAGCATTATTTTTGGAGGTGAAGTTCTTTATAACTTCCCTATCTATTCTATGTGGCATGTACAG AGTGCTCTGTAGTTAGGATATGCATCAATCATTGCTTGCTTTAGTCAGATGATTAGATGAATATTGTAAGTTGTGACACC TATGAAGCCATTTCTGTTTACCCACAGGCTCCAGTTTCAGGTTCCAAAAAACCAGCTGAAGATGGCACGTTGATATTTCT TACAGCAGGTGAATATTATTCTTCCAAGTACTTATTCACATTAGCAATGGAAAAGAGTTGGTGAAGGATTATTTTCCTTT TTTTACAAGAAGGAAATTTAGCTGGGATGTATCAGAATTGGAATTCCCTTCAATCAGATAAATCTTAAATTCACACACAG GGAATTTGAGCCGTTCGAAGGTCGGACGACTCAGATTTTAAGCTTATCTCTTCCGTCCGTTCTTGATGAAACATGAGATC GGACGGCTCAGATTTCTTAACTGTGTTAGTTTAGGAAGCCCTGGTCCCAATAGTTGCTGAAGATTGTAATTATGAACTGA TGAAGACTTTTATACATGTTATACTGTAAAGAATTTTTTTCTATATATCCTCCATTTGTATAATTGGCAGCACATAGCAT TGTGAATATATTCAGACTTTTCTGTGACAAAAGAGTATTGGGCACTAACAGAAACTGAGACAATGTATATGATTTTTCAG GAGACAGAAATCTTTATGAAACAGTTGCTCCTCACTTGGACATCATGGGAAAGGTATATATGTAATGTAGTATTTCATTA AAAAAATCTGATATTTCTTGCAAAGCAAATAATTAGTTCAGACTTCATACCATGTGTTTTGCTTCTATGCAGTCTAAATT TTTCTTGGGTGATGTTGGAAATGGAGCTGCAATGAAACTCGTTGTCAATATGATTATGGGCAGGTCTTTTAAAATTTGCT TCCTGCTTTTTTGCTGTTATTTGTCATTGTGTGCCGATGATTAAGGTGATATTATTTCTTTCTATATTTCCCGTTCGTTC ATAGTATGATGGCATCCTTTTCCGAAGGCTTACTTCTCAGCGAAAAAGTTGGGCTGGATCCAAAAGTACTTGTGGAGGTA TTCAGTTATCATCTAGTTCATCAGTTATCATCTAGTACTTGTCTTATGAAACATTTCCCTGGATTGCTCATTGATTTCAT GGATTATTAAACATTCCATATTTCATTTGTTTCTAATTGAGATCTAGGTGATCATCCACGATTGAAAAAAATTCAACATA ATTTGTGACTTTTGTAGGTGAAATTTGCTACACAAATTTACATGGATTTTCTGGCTGTTCCATAATTAAAGCCCTATAGG CCTTTTATCTTTCACTTTGGGCTGCTGTAGATTTGGTAGTTGAGAAACATCATTGACTTTTTTCGCTAATGTGATTCATT AGTCTGCAGAAAATTATTAACTGCATGAGAATGGTGTTAAGTGATACCTTGTCAAAGAGAAATCATAATGCAAATAAATT TGCAAGAATGCTGGATAGTATGAAGGATATTCACTCAAATTCTTATATTGTTACTTCGGCCTCATTAGTTAAAATAAATT CCTTACAATTTCGCCCAAAATTTTGGCACAATATAAGGGTACTGACTGCACTTCTGTTTGTTTCCACCCCCACCCTTGTG TGATATCATCTAGTAGAATGTCAACCTTGGATCCCAGGGCTAAGTAGAAGCAACCTCATTTAAAAACACTTGCTTCTGGT AACATACAAGATATTGTGACTTTCTTGAATTTTTTCTTCTTACAAGTTCAAAATGTTTCTAATTTGCTTATAGCTGTCAT TATTCACTTTATTTCTATTCCTGGGAGAACTAATTTCCCATAACATGTCTTTCTTTGATATTAGGATTCATATTGTGTTG CTTATAAGGAAGAATGTGTCATGGCTGATGGCTCTCATGAGAAATGAATTAAATATTCTGCAAAATTGAAATTTTGCAGG TAATTTCACAGGGTGCCATTAGTGCTCCAATGTACTCAATGAAAGGCCCATCCATGATACAGTCACTTTACCCAACTGCA TTTCCCTTAAAGCATCAGCAGAAGGTTTGTAAATGAATGAAAATTCCTCTTTGGTAACTCTCATAAGTCAGAATTAATTC TCACAAAGAATTAATGTTGACAGGATCTAAGACTTGCCCTGGGGTTAGCAGAATCTGTTTCCCAACCTATTCCAATTGCA GCAGCAGCTAATGAGCTATATAAAGTTGCAAAATCCCATGGCCTTAGTGATCAGGACTTCTCAGCTGTCATTGAAGCATT GAAGTCCAAGTTTCAGCACTCAGAAAACCAGTGA
CDS sequence (LotjaGi3g1v0026900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTCCCCCATGGCACAAAATCTCTTAAAAGCTGGAATTGATCTGACTGTTTGGAATAGGACCAAGAGCAAGTGTGA TCCTTTAATCAGCTTGGGAGCAAAATATAAATCATCTCCTGAGGAAGTAGCAGCATCTTGTGATGTCACATTTTCCATGC TTGCAGATCCTCAAAGTGCAATGGATGTTGCTTGTGGGAAGCATGGAGCGGCAAATGGAATGGGTCCAGGAAAAGGATAT GTGGATGTTTCAACTGTTGATGGGGACACTTCTAAATTGATTAGTGAGCACATAAAATCCACTGGAGCATTATTTTTGGA GGCTCCAGTTTCAGGTTCCAAAAAACCAGCTGAAGATGGCACGTTGATATTTCTTACAGCAGGAGACAGAAATCTTTATG AAACAGTTGCTCCTCACTTGGACATCATGGGAAAGTCTAAATTTTTCTTGGGTGATGTTGGAAATGGAGCTGCAATGAAA CTCGTTGTCAATATGATTATGGGCAGTATGATGGCATCCTTTTCCGAAGGCTTACTTCTCAGCGAAAAAGTTGGGCTGGA TCCAAAAGTACTTGTGGAGGTAATTTCACAGGGTGCCATTAGTGCTCCAATGTACTCAATGAAAGGCCCATCCATGATAC AGTCACTTTACCCAACTGCATTTCCCTTAAAGCATCAGCAGAAGGATCTAAGACTTGCCCTGGGGTTAGCAGAATCTGTT TCCCAACCTATTCCAATTGCAGCAGCAGCTAATGAGCTATATAAAGTTGCAAAATCCCATGGCCTTAGTGATCAGGACTT CTCAGCTGTCATTGAAGCATTGAAGTCCAAGTTTCAGCACTCAGAAAACCAGTGA
Protein sequence (LotjaGi3g1v0026900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSPMAQNLLKAGIDLTVWNRTKSKCDPLISLGAKYKSSPEEVAASCDVTFSMLADPQSAMDVACGKHGAANGMGPGKGY VDVSTVDGDTSKLISEHIKSTGALFLEAPVSGSKKPAEDGTLIFLTAGDRNLYETVAPHLDIMGKSKFFLGDVGNGAAMK LVVNMIMGSMMASFSEGLLLSEKVGLDPKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESV SQPIPIAAAANELYKVAKSHGLSDQDFSAVIEALKSKFQHSENQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 278 | 278 | 1.2E-173 | – | |
| PANTHER | 1 | 278 | 278 | 1.2E-173 | – | |
| Gene3D | 1 | 153 | 153 | 1.1E-41 | – | |
| Pfam | 1 | 148 | 148 | 7.1E-34 | ||
| PIRSF | 1 | 283 | 283 | 8.7E-97 | ||
| SUPERFAMILY | 1 | 152 | 152 | 4.85E-35 | ||
| SUPERFAMILY | 152 | 280 | 129 | 5.33E-35 | ||
| Gene3D | 154 | 277 | 124 | 9.7E-37 | ||
| Pfam | 154 | 273 | 120 | 1.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | NADP binding | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0026900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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