Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0058400 |
Transcript ID | LotjaGi3g1v0058400.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820; TrEMBL-Plants: tr|I1LVF2|I1LVF2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0058400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6138352..6147654) extracted from Lotus japonicus Gifu genome v1.2.
CCATAAGTAATGATAGCTGGCAAGTCAGAGATGTAACTTCATTTCTTTGAATTTTGGTAATGACAAAAGCCTTTGTCATG GATTTGAGAACACTAATATAATTTGAAATTTAAACATTTTCTCTTGTACCTTCGGTTTCGTTCGGATACCGCTCAGAGCC CGTCCAGTGCAAAGCAAACCGTTGCAAACCATTTCTTTACCCGTTTGACCTGAATACCCGCCCAAATCCGCCTGTTTCGG ATATGTCGGTTTTCGGTCGGGTGTCATTTTTTGCTCACCCCTAACGTTGACCCGTTTTTTGGTGGACCCCGACCCAAATC TATATATGTGATGAAGGTCTTGTTCTCTGTTCAGTCTTGACTCTTTTGATCATCTCATAGAATGTTTTTCATATAACTCC ACAACCATATACCATCACCATGGCCTTGGAGTTGAAGAATTTGCTTATGCAAGGCCTCAAGTCTTTCAACCAAGTGAAGG TCGCCCACTGCCGCCTCCTCCGCCTCTGCCTCTGCCTCCACCAAGACAACTACCTCGTCAGCCTCGTCTTACGCTCTTCC TTCCACTTCGGCAACACTCACCACCCCAAGCTCCTCTTCGACCAAACCCACAACCCAAACACCTTCCTCTGGAACACCAT GATTCGCGGCATGGTCGACAACGACTGTTTCCATGACGGCATTCAGCTCTATCACTCCATGCACCAACAGGGGTTCTTCC CGGAAAGCTTCACCTTCACTTTTGTACTTAAGGCGTGTGCCAGGCTCTGTCATTTCCATTTGGGTCATACCCTTCATTCG CTTGTTGTCAAAACTGGCTTTGTTGGTGACGTGTTTGTGGAGACTGGGCTTCTTGGGTTCTACTCCAAATGCGGGCATTT GAGGGATGCCCGGAAGGTGTTTGATGATATTCCTGAGAAAAATGTTGCGTCTTGGACTGCTCTCATTTGTGGGTACAGTG AGTCTGGCTTGTGTGAAGAGGCTGTTGATTTGTTTAGAGGGTTATTGGAGATGGGTTTGAGGCCTGATAGCGCTAACCTT GTTCATGTTTTGGGTGCATGTGCAAGGTTAGGGGATTTGGGAAGTGGACGGTGGATAGATAGGTATATGAGTGAGAGTGG TTTGCATAGGAATGTCTTTGTGGGGACCACTTTGGTGAATATGTATGCAAAGTGTGGGAGCATGGAGGAAGCACGTCGTG TGTTTGATGGGATGCTTGAGAGGGATGTTGTTTGTTGGAGTGCCATGATTCAGGGTTATGCGTCTAACGGGCTTCCGAGA GAAGCACTTCAGTTGTTCTTTGAGATGCAGAAGGAAAATCTAAGACCCGATTGCTTTGCCATGGTGGGGGTTCTGTCTGC ATGTGCAAGGTTGGGAGCGCTACAGTTGGGTAATAGGGCTAAGGGTTTGATGGACGCTGAGGAGTTTTTGTCTAATCCCG TGTTGGGTACTGCCTTGATTGACTTGTATGCGAAATGTGGAAGCATGGCACAGGCATTGGGGGTTTTCAAGATGATGCAG AGAAAAGATCGTGTGGTCTTCAATGCTGTTATTTCTGGACTGGCTATGTATGGACATGTTGGAGCTGCATTTGGAGTATT TGGCCAAATGGAAAAGCTTGGAATTCAGCCAGATGAGAATACTTTTCTTGGTTTGCTTTGTGGATGTACTCATGCTGGTT TGGTTGGTGATGGTCGCCGTTATTTTAATAGCATGAGTTATGTCTTTTCAGTAACTCCTACGATTGAGCACTATGGATGC ATGGTGGATCTCCTGGCGCGTGCAGGTTTGTTGGTTGAAGCACATCATTTGATCAAGAGTATGCCCATGAAGGCTAATGC TATTGTTTGGGGGGCATTGTTGGGAGGATGTAGATTACATCAGGGTACCCAATTGGCCGAACATGCGTTGAAGCAGCTCA TTGAGTTGGAACCATGGAATTCAGGACATTATGTTCTCTTAGCAAATATATATTCAGCTAGTCGTAGATGGGATGAAGCT GAAAAAATCAGGTCAACTTTGAATGAGAAAGGAATGAAAAAATTACCTGGGTATAGTTGGGTTGAAATTGATGGGGTCAT TCATGAATTCCTTGTAGGAGACACATCCCATCCTTTTGCACACAAGATATATGAAAAACTTGAAAGTTTATTTAAGGACA TTAGGGAAATTGGTTATAATCCGACCACTGAGTTTGTGCTCTTTGATATAGAGGAGGAGGAGAAGGAGCACTTCCTTGGA TGTCATAGTGAGAAGTTAGCTGTTGCATTTGCACTGATCAATACCAGTGCCAAAGATGTGATTCGTGTTGTTAAAAATCT TCGTGTATGTGGTGATTGCCATGAGGCTATTAAACTCATTTCAAAAGTTACAGGTAGAGCGATCACCATTAGGGATAATA ACAGATTCCATTATTTCAGTGAAGGTTCATGTTCTTGTCGAGATTATTGGTGAAATATTCATGGATTCTGGGGTTTAAAG TTTAAACTCTTTGTTTGCCTTCAAAAGTGTTAGACTTCAGATTCTGTCTTGTGTATGTTAAAATGGAATTTAATATTCTC TTCAATCCTTTACAAGTATTCTGAAAGGGGAGAAATGAAATCTATGACATCTTGCACCTGACTTGAATACACTGGAGATT GGAAATAGTTTTGACTTTTGATGCAATCAGATGGATAAATGGGCACTTGTTAAGTGCACCTGCATACCTTCTGTCACAGT TTCTTCCATCCCTCAATTTGAAGCAGCAATTTGGGTTGAAATGTGAACTTGAAAGTTGCTGTCATCTTGGAGAATGCAAA TACGAAAATGTGAAATATTCTACTGAGGTAGAACTTTTGTTTCAACACATAATGATCAAAACTAAGCTGGGTTCTTTTGT AGATTATTTAATCTGCCCTTTCCGTTTCTTCGTCAACGTCCCCGCATTCAGAAGACATGGAGCCTGGCGTCAAGAAGAGA GAGAATCCCGATCCAGATTTACCCAAGGCGATCTCCACCGTCGCCACCATCTTGAGATGACTGGATTGCCGACTACCAGT GTTCGTCCCAAAATGCTTTCGCATTCGTCTAGGGTTTACCCATGGCTGATTGGTGTGATTACCTTCGAGACTCGCATGAC ATTGCTCAGGTCGGTGCTACGATCTATGAGGGAAAAATTGATTTATGGTTGATTGGTTTTCTCTATCTCCTTCTAATTTG CAATAAAATGGATTTTGTTACTTTAGTTTTAGTAAAGTTCTCTATCTGACTAATTTTCTCTATATGTTGCTATTGCTTAC ATCTTCCTGAACTCTTCAGATTGTCAAGGAGCAAGGCGGACAGTCACGGTACCAGCATAATATGGAAGTGGTTTGGTTAC TGATTTTCCTAGAGGCCTGCAAAGGGTGTGTTCTGTCCAATGTTATCATTTTTCTTCTTTCATGTTATCGTTTTATGCTG CAGGAGAGTGTAAGTTCTATTGCTAGAAATGCATCTGAAGGAAATATAGACAAGATGAAGTTAAACCATTAATGTTCATG CACTTCTTTTCTTTATTAAAGCCTTTTTTTCTCTTATTGATATAGTTATCCAAGTTTTTTGGTGAGCACTTGCTTTTGAT GGTTCTTTTTCTACACTTTATTTGCTTTCAAATAGGACTCTACCCATGATTTTCTTAACTGGTTCTTATCTGGTATTGAA TACTTGATAAGAAAATACTTTTTAGCTGGTTTTGATTACATATAAGAATTTTTAGTTTAGTTTATTTTCTGATTATCTAA TTTGGATTTTTCATTCCCTTCTTTTGGAGAATCTCAAGATATTAGCTGATGATTACGTAGCTGTTTCGTCACTTACATTG GAAATCTCTACTATTTTTAGTCTTTTGCAGAGTTCAACTCCAATTTTTGTTTTCTATCTGTTTTTGCTTTTACATTTTGT AATTCCAGTTGTCACAACACCTGCATCTCCAATGTTAGTTCTATCTGGGATAGAGAAGTGAATTGTAGAAGCTTTCAAAA CCACCCTTATATCTATAAAGAATCCATAGTATATATATTTAGGAAAAGATCTCAGCACAGTCATCGCTTATGTGTCATCT ACTGATTGGTTAATATCAGGAAAAATCCTACATGGCACTCCATGCTTCATTCTTCTTAACCTACACCTTTATCATTATCC TTCACTCATCCCTCCTTAATGACATTTATTCCCCAGAAGCGTTTCAGCGTAACATCCTCAAACAGTTTCAACCTTCAATT TCACCTCTTCCAATCTGTTTTAATCGCATGTCTCAATGGTTGGGAGGGAGTAAATCCGTTTCAACCCATCGCTCCCTTCC TCTCTTCCCCTTCAATCGCATCTCTCATGGCCCTTCCAATTCCCCTTCAATCGCATCTCTCTTGCCCTTTCGGTTCCTGT TTCGAATCTGTGTAAATGGGTTTGATATCTGGGATGTTTATGGGTGGCATAGAATTGATGGCAGCATGGGAGAGGATGAT GAGGCACCGAAGTGCGTTCCTATCTTCACAGTTCCATGAACCAAATCGCCGCTTCTATCTCACCACCGTATCCTTTCCGG TTCACACAAATCCGTATATCTCTTCCAACTCAAGTTCTTCCATCTTGGTTCATGTTTCTCAACCCGACGTCTTCTAAATC AGAGTTGCTCTTTGATTTAGGGTCCCAAATCATCCAGATTGTGATTCTCTTTCTGAGTAAACCATTTTATTATGACAGGA CAACCAGGCATGTAATCTTGGGGTGAGGAAACGGATGGAGGGGATGATGATAAGTGACTGTGAAGAAGTCACTGAATATA GAGGTTAGTGCTCCTTTCCCAAATTAATCAAACTTCATTCTTTGTCATGGCTGCATCTTGAAATGATCTTTGATGATATC CTAACAGTATTATGTTGTTCATAATGATATGGTGATACTATTGGTTTTGTATCAACACGTTTTTCAATTTCTTATGCAGG TTTTTTTAATTGCCCACCTATGTTTCTGATCTGTATAGAAGAAAAATTAGTTTTTAATTTGATCTCTCTGAAACTGCTGC AGGTATTGAGATTTTTAAATTTTAATGCATGTCCCTTTTCTATGCTAACTTTGTGCATAACACAAGTATTCTCTTCTTCT GAATCTGTTATCTTCATTTATTTGGGTTTTGATTTTTTTGCCTTCATATCTTTTTAGTGTTCTATTCTGAAGATGCTTAA AGTGAGATAAAGCGGGTTCGCCACAGGTTCTGGAGAGACTGTAGAGGAAGAGCCATGCACAGTTCGAGCTTCTCTCAAGT TTTTTCCATAATATTCATGGTGCATCCTCTAATTACAACAGCTACCAAGTTCACATCCAAAATTTACTCATTCTAAGTGC TACTTCTGCATTGTCCTTTGCACACTTGATATTTTATATTTTTAGAACTGTGTTTATTTTGAGTCGTGTATGTTCTCATT CAACTGAGGTTTTGTTTTTCTTTTCTTTGCTGTGCTGATTTTGGAAGCAGCTTACTAAGGTGTCTGTACATGAAGAACAT TCAAGTATTCCATGTGAGAGCTTGAACATCACAAAATATGATTGAACACTGAGCATATGAAGAGCTTTATGGCGGAGAGT TAACAGAATTGTCTTATGGCAGATTGTAGATTCAATGATTTCTTTGTTTAAGGTGGACTTATCAGGAAGAGGAGAGCTTG CTGAGTGCCAGGTATATGAATCGGTCATTTAAATTCCTTTACAACAACCTTTTCCCTTCTCTATGTCCAATTTTGCTGAT ATGAAAAATAACCATTGCAGCAAAAACTGGCACAAATGCATTCTTGATTGATAAAGATAGCTGGCTGAACCCTGGTGACA GCAACAAGCTTCATTGCATTGGTTATCTTCTTAGTTTTCACCATTTCGATTCGTTCTCAGAGCTTGCTTGTGCTGCCACA TCTCGGGGAACTGCACTACCATCTATAAGTAAAATTCTGCACAATTTCGAATGCATGTTCTTTTCTGTGTTTTATGTTCC TTTGACTAAAGAAACTCTTGCTCTTCCTGTAGCCTTCTATCCTTAAGAAGCTTTTTTTGTTTTCCCTTTTCATTCTTTGA ACGGTTTTTTTCCCTATCTGTGTGTTTAACTATTGCTTCATTTTCTTTTCAGTGGAAAGAATATGAAGAAGAAGCAGTAT GTTGGAGTACCATCTTATTTCTCTTCTGCACTGCAGTATGTATCTAATTATGTCATTTCCTTTTAATTTATTCACTTTTT CTGAACTAATTTTAGCATAATGATGGCAGGAGGGATAACGAAATAAGCAAGCTGGAAGAAACCTCCTTCTCAAGAAGTCC TTTTTACAGTTTTAAAGTTCGGCATGATAAGATATTTATGGTAAAATTTTCTTTTCTTTATTCATTTCCTCAAGCTGAAT AAGCATAATTGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAACGTAATGACGTTGTTAATTAGGTGAAAATGACATT TTTTATCACCATTTAACATAGTTTATGAAAATGAGCACTTTATCTTCTTCAAATACAGAAACGAATTGTTAGAACATGTA TGATTTGTGAGGAATGAGTGATACTTATTTGATCACTATTATGTAAGATATTTGAAGAATGTTTAAATTTACTAGGTAAT TTTTATTGTTCAGTTTTTCATGACCTCCTGATCATTTGAAGGACCTTTACTGAAGTTAAGACATAAGTGTGAAAATCATA GCTATACTATGGATTGCTCCTCTGCCATCCTATAGCTTTCTTCTAGCTACTCTTCAACTTGCTAACTAGCTTTCTGAGAA TGTTTGGAAGTGCAGCAAATATCCCATGTTTGCTATGCCATTTAGTTTATCATATACAGGTCCATGCTTAGTTTGTAATT GTTAGGTAGCAGCAAGTCTTTGAGCATGAAATTCGCAAAGAACTTATTTATTTGCGTATTTATCGGCTTCCAGATTTCCC TTTTTTCCCCTCTCATCCAGATTCTAACCATTCATGGCTTCAATCGCATCTTTCATAGCCTGCTCTGATGCAAACGTCAC AAATCCAAATACCCTAGACCTTCCAGTCTCACGATCATTGATTTCAACAGGTACGAATTTCATGCTCTTTCGTTTCATCT CTTCTACATTATTTCTTTTGCTGATATATGGTTTCATGATGTTTATGGCTTCTGGGGAATTAGGATTTACTCATACTCTC TAACTTTGACAGCAGCAAGGAGCTTTTGCGCTATTGATAAAGATTGCGGGTGAGGAACATTTAGTTGGGAACGAGAAAGG TGTTATTGGCCAAGAGTCTGACGAAGTTTCAATTCCTTCTCATTTGATGACCGGTACTTCAGAGGTAAGTTTGTTGAGGG GAAATCTATCACATTATTACCCTTGCCTACACTCTGATATACATTCATTGGGTTATTTCAGGGACTATTTGATTTTATAG CAGCAGCTCTTGCCAAGTTTGTTGATTCAGAACCTGAAGGTTTTCCCCTCCCTCATATTTTTTCCCAAACTGCCGTTTCG AGCCTGCAATTCATCTATTACATATTCTCACCGTTCGTCGCTTCAATGGCATCTCTCATAGCCTGATTGGATGCAAACCT CACAAGTCCAAATCCCCTCTCTATCATAACACGTTGCATAAATTGGGAACAACAGGTTTGCTATATAGCCTCTCTAATTT TTCTGAAAAATAACACCAAACTTCAAATTTCATTTTCTGTATTTTGTAGGCTGTTCACTGTCTGTATTTTTTTCTAATGC TGCACAATCTAACTTCACAGCAGCAAGGAGATTTTGGATACTCTCAAGTATTTCTTTTCCAATTTTGCTTCCAATTGTGC GTTCTGCAATTTCATATACTTTACACATTTTGTGTAAAATTAGCTACTGTGATTTGTCTGATATGATTAAAGGTGAAGTA ATATGCTATATGTTCATCAAAAGCTTCTTTAATTTCTTGGTCAAAATTTGATAAAAGAAACTCATGCTTTAGCATAATTT AATTTGTCTATAAAATGTGTGCACCATGCAGATGAGAACTAATAATGGAGGAGGAGAGGCTACAACACGTGAAGTAAAGA AGAAAAGATCAGAAGCAATCTCAAAAAAGCCTAAGCAAGACACATCAACAGCTTCTTCTTCAATGAAATGATGAAGTGTA AAGAAAAGATCACTGTCCTTCAGCTATCTTAATCAAGTCCCAAAACTGATAGGAAACCATATTTATCTCACCAATGTATG ATTCTCATGCAGCATGAAGGAGAAATTCTGATTGGTTTTGTCAGAGAGTTTAGGATGGATCTCAGAGAACAATGGAGGTT GATCGACCCAGCGGTTCTACAACATTTAATATGATTGCATTTTCTCTCTAGGATATGATATGTTGGTGAGTGTCTTTTTC ATTTCAAAGTTTCTTATCATGACAACAAGGAGATTTTGTACCCTGCATTAGATCCTGCTGTGAACATTCCTGTGTTCAAT TGTCAATATGAATGGGTTTGGACTCACACACTTTCCAAATATGAAGCTCCTCACTACAAGTCGGTATGCTTATTGTTACA AGCAGATATATTTGTAAGAGTTTTTTTATATATTCCACTGTTGGTAGTATACTAACTTGATGACGTTTATTTTCCTTTCC TTCTATGTAGCATGTTCCTAAATGTGTTGGTCAATATCTAATAGAAGCACGTCTTGACAGTTGGATTTCATCGGCCGTTC CGGAGCGAGGGTTGAGTGTCGTGTTATTATTCATCTCACTCATGCATATGTGAAGATAGGCAGCGGATGGAGAAATTTCT GCAGAATTAATAATGTGTTGCCATTTGATGAGTTGACCTTCAGGTTTACAAGTTCAGATGCTAGGATTGTTCATGTTAAT TAATTGGGCTTCTTAGGATCTTAAGTTAGGGAAATGTTTGTTATCCAGTATGCCTTCGCTGATTTTTTTTTTGAACTGTT GTGTCCTACTGAAATATCATGAGGGAAATCGTTCTGGTGTCTCTTATTCACTGGGGGCCAAGCTTAAAGATAGTATCGCT GTTTTTTGTTCACGGGATACGTGAGTGACCAGTGAGGATTGTCATTTGGCCCTGCTGAACCTGATTTTGTAGTGTCTGTA TGCAGCTTCACTGCTTTCTTTGAGACCTATTAGTTGTATGGTTTCCCTTTTTTCTTTGTGTTAGCTTTCCATTTCTGTTT GTAATGTTCCATTGTTTGAGACTTTTTATGTAATGTACTAATGTGACACCTATGTAATTTTGGCATTTCCCTACCATATT TATAATATGAGTTTTTTTTCCAA
CDS sequence (LotjaGi3g1v0058400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTGGAGTTGAAGAATTTGCTTATGCAAGGCCTCAAGTCTTTCAACCAAGTGAAGGTCGCCCACTGCCGCCTCCT CCGCCTCTGCCTCTGCCTCCACCAAGACAACTACCTCGTCAGCCTCGTCTTACGCTCTTCCTTCCACTTCGGCAACACTC ACCACCCCAAGCTCCTCTTCGACCAAACCCACAACCCAAACACCTTCCTCTGGAACACCATGATTCGCGGCATGGTCGAC AACGACTGTTTCCATGACGGCATTCAGCTCTATCACTCCATGCACCAACAGGGGTTCTTCCCGGAAAGCTTCACCTTCAC TTTTGTACTTAAGGCGTGTGCCAGGCTCTGTCATTTCCATTTGGGTCATACCCTTCATTCGCTTGTTGTCAAAACTGGCT TTGTTGGTGACGTGTTTGTGGAGACTGGGCTTCTTGGGTTCTACTCCAAATGCGGGCATTTGAGGGATGCCCGGAAGGTG TTTGATGATATTCCTGAGAAAAATGTTGCGTCTTGGACTGCTCTCATTTGTGGGTACAGTGAGTCTGGCTTGTGTGAAGA GGCTGTTGATTTGTTTAGAGGGTTATTGGAGATGGGTTTGAGGCCTGATAGCGCTAACCTTGTTCATGTTTTGGGTGCAT GTGCAAGGTTAGGGGATTTGGGAAGTGGACGGTGGATAGATAGGTATATGAGTGAGAGTGGTTTGCATAGGAATGTCTTT GTGGGGACCACTTTGGTGAATATGTATGCAAAGTGTGGGAGCATGGAGGAAGCACGTCGTGTGTTTGATGGGATGCTTGA GAGGGATGTTGTTTGTTGGAGTGCCATGATTCAGGGTTATGCGTCTAACGGGCTTCCGAGAGAAGCACTTCAGTTGTTCT TTGAGATGCAGAAGGAAAATCTAAGACCCGATTGCTTTGCCATGGTGGGGGTTCTGTCTGCATGTGCAAGGTTGGGAGCG CTACAGTTGGGTAATAGGGCTAAGGGTTTGATGGACGCTGAGGAGTTTTTGTCTAATCCCGTGTTGGGTACTGCCTTGAT TGACTTGTATGCGAAATGTGGAAGCATGGCACAGGCATTGGGGGTTTTCAAGATGATGCAGAGAAAAGATCGTGTGGTCT TCAATGCTGTTATTTCTGGACTGGCTATGTATGGACATGTTGGAGCTGCATTTGGAGTATTTGGCCAAATGGAAAAGCTT GGAATTCAGCCAGATGAGAATACTTTTCTTGGTTTGCTTTGTGGATGTACTCATGCTGGTTTGGTTGGTGATGGTCGCCG TTATTTTAATAGCATGAGTTATGTCTTTTCAGTAACTCCTACGATTGAGCACTATGGATGCATGGTGGATCTCCTGGCGC GTGCAGGTTTGTTGGTTGAAGCACATCATTTGATCAAGAGTATGCCCATGAAGGCTAATGCTATTGTTTGGGGGGCATTG TTGGGAGGATGTAGATTACATCAGGGTACCCAATTGGCCGAACATGCGTTGAAGCAGCTCATTGAGTTGGAACCATGGAA TTCAGGACATTATGTTCTCTTAGCAAATATATATTCAGCTAGTCGTAGATGGGATGAAGCTGAAAAAATCAGGTCAACTT TGAATGAGAAAGGAATGAAAAAATTACCTGGGTATAGTTGGGTTGAAATTGATGGGGTCATTCATGAATTCCTTGTAGGA GACACATCCCATCCTTTTGCACACAAGATATATGAAAAACTTGAAAGTTTATTTAAGGACATTAGGGAAATTGGTTATAA TCCGACCACTGAGTTTGTGCTCTTTGATATAGAGGAGGAGGAGAAGGAGCACTTCCTTGGATGTCATAGTGAGAAGTTAG CTGTTGCATTTGCACTGATCAATACCAGTGCCAAAGATGTGATTCGTGTTGTTAAAAATCTTCGTGTATGTGGTGATTGC CATGAGGCTATTAAACTCATTTCAAAAGTTACAGGTAGAGCGATCACCATTAGGGATAATAACAGATTCCATTATTTCAG TGAAGGTTCATGTTCTTGTCGAGATTATTGGTGA
Protein sequence (LotjaGi3g1v0058400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALELKNLLMQGLKSFNQVKVAHCRLLRLCLCLHQDNYLVSLVLRSSFHFGNTHHPKLLFDQTHNPNTFLWNTMIRGMVD NDCFHDGIQLYHSMHQQGFFPESFTFTFVLKACARLCHFHLGHTLHSLVVKTGFVGDVFVETGLLGFYSKCGHLRDARKV FDDIPEKNVASWTALICGYSESGLCEEAVDLFRGLLEMGLRPDSANLVHVLGACARLGDLGSGRWIDRYMSESGLHRNVF VGTTLVNMYAKCGSMEEARRVFDGMLERDVVCWSAMIQGYASNGLPREALQLFFEMQKENLRPDCFAMVGVLSACARLGA LQLGNRAKGLMDAEEFLSNPVLGTALIDLYAKCGSMAQALGVFKMMQRKDRVVFNAVISGLAMYGHVGAAFGVFGQMEKL GIQPDENTFLGLLCGCTHAGLVGDGRRYFNSMSYVFSVTPTIEHYGCMVDLLARAGLLVEAHHLIKSMPMKANAIVWGAL LGGCRLHQGTQLAEHALKQLIELEPWNSGHYVLLANIYSASRRWDEAEKIRSTLNEKGMKKLPGYSWVEIDGVIHEFLVG DTSHPFAHKIYEKLESLFKDIREIGYNPTTEFVLFDIEEEEKEHFLGCHSEKLAVAFALINTSAKDVIRVVKNLRVCGDC HEAIKLISKVTGRAITIRDNNRFHYFSEGSCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 371 | 371 | - | – | |
Gene3D | 33 | 146 | 114 | 1.1E-11 | ||
Pfam | 66 | 115 | 50 | 1.4E-9 | ||
ProSiteProfiles | 67 | 101 | 35 | 10.424 | ||
TIGRFAM | 70 | 101 | 32 | 8.8E-7 | ||
ProSiteProfiles | 102 | 136 | 35 | 6.051 | ||
PANTHER | 117 | 226 | 110 | 2.5E-109 | – | |
ProSiteProfiles | 137 | 167 | 31 | 7.235 | ||
Pfam | 144 | 169 | 26 | 0.36 | ||
ProSiteProfiles | 168 | 202 | 35 | 11.641 | ||
Pfam | 171 | 200 | 30 | 8.6E-6 | ||
TIGRFAM | 171 | 204 | 34 | 3.2E-6 | ||
ProSiteProfiles | 203 | 237 | 35 | 6.204 | ||
Gene3D | 205 | 333 | 129 | 2.4E-27 | ||
PANTHER | 224 | 325 | 102 | 2.5E-109 | – | |
ProSiteProfiles | 238 | 268 | 31 | 9.208 | ||
TIGRFAM | 243 | 271 | 29 | 1.3E-5 | ||
SUPERFAMILY | 247 | 529 | 283 | 1.56E-5 | ||
Pfam | 269 | 317 | 49 | 3.4E-10 | ||
ProSiteProfiles | 269 | 303 | 35 | 12.803 | ||
TIGRFAM | 271 | 305 | 35 | 1.7E-8 | ||
Gene3D | 334 | 435 | 102 | 2.1E-23 | ||
ProSiteProfiles | 339 | 369 | 31 | 8.177 | ||
PANTHER | 342 | 544 | 203 | 2.5E-109 | – | |
TIGRFAM | 344 | 370 | 27 | 0.0031 | ||
Pfam | 369 | 416 | 48 | 1.0E-9 | ||
ProSiteProfiles | 370 | 404 | 35 | 10.819 | ||
TMHMM | 372 | 394 | 23 | - | – | |
Phobius | 372 | 394 | 23 | - | – | |
TIGRFAM | 372 | 406 | 35 | 7.9E-7 | ||
Phobius | 395 | 677 | 283 | - | – | |
ProSiteProfiles | 405 | 435 | 31 | 5.722 | ||
Gene3D | 436 | 556 | 121 | 9.0E-12 | ||
ProSiteProfiles | 441 | 471 | 31 | 6.884 | ||
Pfam | 444 | 469 | 26 | 0.16 | ||
ProSiteProfiles | 507 | 541 | 35 | 7.925 | ||
Pfam | 543 | 666 | 124 | 4.8E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0058400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…