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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0059200 |
| Transcript ID | LotjaGi3g1v0059200.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6219425..6227996) extracted from Lotus japonicus Gifu genome v1.2.
TGATAACATATTAACATCCAATAAAAGTTGTGCTTCATTCAACGAAACGGTGAGCAATTCATGATTCATCGATAACCCTC TTTGCTTCTCCATCGTTGTTGTTCATCAAACACAGATTTTTATCCAAATCATCATCGATTGCATCAAATTTCACAGAGAA CAACGTCATTAGGTTTATCTCTCGTTCTTCTTTCCTCTGTTGTTCCTTAGTTGATGTAATTCTCTTGAAGAATTTTGAGA GAGTGTGGACATTGATTTTTAGGGTTTTGTTTCGGGATCATATTGTACGAATCGATTGGGGGTTTGATTCAATCAACTTC ATCGCTTGCAAATTTTCACTCTATTATCATATGAATTCACCTGTAGGTAGCTTTTGCTTTAGGATTTCTCGGTTTGTAGG ATCTGGTCTAGGATTTGATTGGTTTTTATGGTTTCATATGAATTTACATGAACTTTTACTTTATAGGGTATTGGAATTTT TTCAAGGTTGATTTTCATCTGAAGATTTCAGGGGAAAGTTAGGTAATGGCATGTTATTGTATGCCAATTTGATGACACTT AGGTAATGAAACTTAGGTCATGACACATGTGCTCAATGATTACAAAGGCAGAGAAAAAAGTTGGTATTTTTACATGAAGT AGCAAGGATGCAAGCTTAATGTTGGCTAGTTTAAATTGGCCTGGAAGTTTTACATTTTCATTATCAGTTAAACTGTTTTA GATAAAATGACTTAGGAGCATTCACATTTTAGAATTTGCTTTTGAGTTATTATCAGTTTGTGTTCTAACTTCTAAGCAGG GTTTTGTTGTGGATGACTTCTGGTCTGAAATTCATATTTTTTTGTTTGTGATCTGTACTCTTTATTAGGGCATTAATTGT TAATATACAACACTACATTCTTTTTGTAAGTTTTAAATGACATCATATATCAGAACGAAATAAACTCAGTCAGACTTTAA ATTTAACTGCATCATCTGAAAATCTTTTTAGCTTGCTTGTCAAACAGTGAGTTGCTGTAAGCTACACCATTTCTCTTGGC TGTTATCTAATGGATAAGGGACCACCTCATAGCCTTTTTGTTAATGATGGTTCGTTCATGGCGAGGTTCAAGCAGCTTCA ACAAGAGCAGGGGAAGGGGAAGAATACCAAATTAGAGGATTCTAAACCAATTAAAGTTGTTTCTAGACCGCTGACTCCTA ATCCTTCCATTGGTAAGGCTACTGATGCACGAAAAACTTCCCAGGCTGGTTCTAGTGGCAAACTTGCTTTCAGTTTAAAG CAAAAATCAAAGCTAGTTCCACCCCCTATTAAGTTGACTGATGAGGATGAAGAAGAAACTAATGCCGGGGATGTTTCAAA TGACGCACCGTCGAAACGGCAAAAGTTGGGTCAGGATGATGATGCTGAGCAATCATCAAGACCACTTGATGTTGGTAATT ACTTCTCACATAAGCTATATGCACATGTTTGGTTTGTGGTTAGTATTCTATTTCCCATCAAATGCATGAGGGAGGAATTA TCAAGTAAAATAATCAAATAATGGTTCTATGTTGTGATCCATGTAGTGTGTCATGATGTAATTATCCCAAAAGTTTAAGC TATTGGGTAAATAACGCATGAATGGTTTAATATTATATTTCTTACATGCACCCTCATGCAAAAGCCCAATGGGCTTGAAG CGTGGACAATGCATAGACAACCTACCTACCTTGTGCTTTTTATTCAACTTTTTATTAGAATAATTATAGACACATCAAGG ATCAAACTCTAGACCACTTTGTCATAGAGGCTCTGATAGCATTTCATGAACTAACATATGAAAATAAGATCAAAATAATT TATAGGTAGGTCATAAGTTATTTTCATAAGCTTGCCTAGACATTTGCATTAACGTATATGCTATAAGGTAAAGCTCAAAT AAGATCTTCCAAATACAGCCTAAGTAGACGAAGAGTAAAAATCAGTTGTCTTTTTGGGTGTCTTTGTGAATCATGTACTG AACTTCCTTGATTTAGTTGAAGGAAGATTGAAAGTTGGTTGCCTCAGCTAAATGAGGCATACAATTGCATTCATACTATT TATTGCTTCCATTTTTCTTCTCATATAAACTATAAAGTAGAGTCCTCCTCTACATTAAGCTCAGTTTCATTACTGAAGGG GTAATTAGTATATTCCTTCTTTGCCAAGTGAAGTGGCATTTAGTTGAAGGAAGATTGAAGTTGGTTGCCTCAGCTAAATG AGACATACAATTTGCATTCACAGTTTCACACTGCTTTTTGCATCCTTTATCTTCTCGTATAAAGTAGAGCCTTCCTCTAC GTTAAGCTCAGTTTCATTACTGAAGGGGTAATCGGTATATTCCTTCTTTGCTAAGTGAAGTGGCATTCAGCAAAGAGGAG AAAGTGTCTTGAATATTTTGTATCATGAATGCAGCTTATTCCTCATGTACCTATCAAGAATGGTGTATTGGCACGCCTGC TACGAGAGTAATTTCCATTCCCTTGTTCATGCTCTCGGTATTAATAAGTTTTATAAGTGATATGCAGCACCTCCTTCACC TAGTGATCCTACTGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAACGGAAGGCAATTTGAGGATGTTA CACGCCAAAAAAATCCTGGCGATACACCTTTCAAGTATGTTTAGAGTGAACTCATAACTATGTTGCCTTGATCTTTTGCT TAATGTTCCTAGTTTCGAATGTAATGTAAATATGTGTTGTTTGTTTTAACATGCAGGTTTTTATTTGATGAACGATGTGC TGACTACAAATATTATGAATATAGGCTCGGACAAGAGGAAAAGACCCTTTTGCAGTATAGGGAACCACAGGCAATTCATT ATGGTTAGTTTTTGTTATGAGTTTGGAATTTGATAAAATAATACTTGTATTTCATTCATAATACTTGACTAGACTACAAT ATATATATAGACTAACAAAGAGATTAAAACAAACTAAATCTATCTCAACCTATATCTATTTAAATAGATATTATCTCTAT TTAAATAGATACTAATCTAAAATAGATAAACAAATCTTAACTATATCTCTATGAGATAGCACTAATAATAAACTAAATCT TAACAGATATTCAACACTCCCCCTCAAGCTAAAGCTTACTTAGCTTTAAGCTTGTAACAAATCTAACCCAAGAAGAAAAT TATCTTAATAGATATCCCTTAATAATGACGGTCTTGGCGAATCTCTGAATTGAATAACTTTCAAACTTCTAGTAAATCCT TGGCGGCAAAAAACAACTTCTCATACTTGATCTGGCTGAAATTGATGCAAGACAAAAACCAATTCTTCTGGAGTGTCGTA GGGTAGCTGAGCCAGCAAACAAGGGCGAAAAACCAGCAACAATACGCCCGAAAACAAAACAAGGCTGAAGCAACAACTCA CCAACAACAACCACACAGAAATAAAACATACTTGAGGTCGATCGATTGATGGCTTCTAAGACAAACAATGGTGTCAACTT TGACACAGACAACTCTCAAACATTAGAGAGTGGGCCAGCGCAACTCGCAGCTGAAGCCCTAAAACCAACAAACCAAACAA TCGAGACAAAACAAACGAAGGTGACACTGTCACCTTCAAAACCAAATTGCATAAAGTCAGCCAAGATCAATATAATAAGA GCATCTCGAACAATGAGACGCAAACAACAACTCAAGTCTCAAAAACCAATGCGGAACCTGAGCGTCAAAACAGAGTTAAA ACTCTAAACCAAACCAAACCAAACCAAACTAAACCAAACCAAACCAAACCAAACCAAACTTGGCCAACAATGAGAGATGG CACAACACACGTCAAAACAGAGGATCCTTAAAACCAAACCTAGCTGATACACAAAGAGGACCAGCGAGAACAAAGCAGCG GAGAGAGCGGCGCAATCTGGCTGATACACAAAGAGGACCAGCGAAAACAAAGAAGCGGAGATAGCGGCGCGTGGACTTCA CACGCAGAGAGATGGGAGGCGCGTGGCTTGGAATCCGGCGGCGGTGGCTGACTGTAGTCTCTAAGATACTTAACAATACC TAACACTTCCCCTCAAGCTATAGCATATATGTCATATGCATAGCTTGTAACAAATATAATTAAGATTTAACAATATCCAG ATCCTCCCCTCAAGCTAGAGCATATATGTCATATGCATAGCTTGTAACAAATATAATTAACTTGAGAAGTCGCTGCTGCC GGAGAGAGATATTCCCAATAATAGTCCAAAATTTATACACCAACAAACCACACAATGCAAAACCAATTCTGCACTTTAAT AGAGAGCAAAAATCTTTTCCAACTCCAAAACCACACTGTGCCATCAAAGAAACAAGAAACCAAAACAAGAAACTAGAGCC AACCATGTTCTGAATCTTAAGATCCTTAAATTTAGCGTTGAAACAAGTTTTTGAGTAATACGAGCATACTTCCTTGCTGC CAATCTGGACCAATGGACTTCTGGAATGGAACAGGGAGGAGAGGAAGACCGGTTCTGGGCAAGAACCGCCAAAAACCGAG AACTGAAATTCTTAGAATCTGGAGAACATGTGGGCAAAAAGGAAAGAGAACAAGCGTGAGGGCACCATGTGTCTTGCCAC AACTACACCAATTGTAGTTTTAAGTCCTAGTTTAGACTACCAAGAGTAACCAAAAGTGATAACTACTGTCCACCAAACCA CTGCTCCATCAACAACTTGCAAACGAAACCCAAAGATGCAAAAACCACAGTAACAGAATTCCACAGTAGCATGGTTCAGA CACTTTAACACGAGTCACGGCCACAAACGACACGCAAGAAGGGCAGATATGGAGAAACCGACCGCTGGAACAGAATCAAG AGAGCATGGCGAACCTTTCTGTGGAAGCGGCATCACGAACGATGGCTGGGAAGGCGGCACAGCGAACCGACCGTTGATTT GATAGTGGTTGAACATTACTAGGGTTCCAAGAGAAAGGGAGCCATAATCAGAAAGAAACGAGGCCGTAAGAAAACGGCTA GAACTAACAAGCGGAAGCAAAGTAAGAAAAATAAATCCAAAGAGATTTGGAAAGTCACCATGAGGGGGCTCACGGGGGAG GAGCCCCCTCACAGCGGAGGGATCAAAACTAGCTCTGATACCAACTTGAATTTGATAAAATAATACTTGTATTTCATTCA TAATACTTGACTAGACTACAATATATATATAGACTAACAAAGAGATTAAAACAAACTAAATCTATCTCAACCTATATCTA TTTAAATAGATATTATCTCTATTTAAATAGATACTAATCTAAAATAGATAAACAAATCTTAACTATATCTCTATGAGATA GCACTAATAATAAACTAAATCTTAACAGATATTCAACAGTCTCATTGTGGGCAAGAAATCTGACAGTTATTGCAACATAC AAGATTTAAATAATTTGATAGATAAGATCATAGTAGTCAAGATCGCGACTAAAATTGCTTAATCGCTTAATTATGTGACT AATGGTTCCCTGGGCGATTAAAATCTCATATGTTATCTTTTTCTGGCTTAATCATGGCATAATAGTCAGATTAGTTGCCT CCATAATCACACCAGAAAGTATTTTTTTTTTCTTTGTTATTTATGCTATTTTATATGCATACATATGAATTTATAAGCAT ATATATTTGCTAAATCCTATGCTTTTGTGATTTACGATTAACACCCCCCCCCCCCCCTCTTTGACTACAGTCACAATCCC TATTATGACTTCTATGGATAAGATATAACCATGTTCTCAGAATTATTTTACAATCTGTGAGAGGTTAAACCGCTAATATG TGACATTATTGGGCTTCCTAGTCAATGATGTCTCATCATGAAGAAAATTATAATTTCACATTTTTTAAGAGTTATTTGTA ATAACTGCAATGATTTTATTGGTATGGGTTGATGCTTGAATCAGTAGCCATATTTCATGCTTCTTTCACCTGCCAATATG TAGATATGTGAAGAGTTGCCATGGTTGTACTATATTCGGTAGCATTTTTTTAATTGGGCTCCCTGGCTCTCTCTGGTCCC TGGAATATGCTTTCTGTTTTCTCTTGACGTGGGTTTATTTGAACTTGGTGTGTAATGGTGAACAATTCAATTTATAAGGG GTACAAGCAGTGGCGGAGCCATGTTGAGACAGGGGAGGGCTGCAGCCCCCCATAGGTCACGTTTTAATTGGTATATATAT GTACCTACGCATAATATTTTATATGATGTGTGTTGTCCCAATGGTTGTTACTCATGCTGTATTACTGGTAGGTAGCGTCT TCAATTCCTGCCCAAGCCATTTTTTAATTATATTCCATTTTGACAAGCTTGTTTGTGTTTTTTCTAGGTATGTAAATTTG TACAATTAATTAGTGCAAGAATTAAAATATTATTTTATTGCAAGAGGAAAGCTAATAGTCTTTTTTTGGTACAAAGAAAA GCTAATAGTCTTAGAGCATAACATTAATATATAAATTTCTCTAATAACTAAAAGAATATTATTAGTATAACTTATAATAA ATTTTCAATAAGTATATAATTTAGTTTAGTCATTAATTTTTATGTATATATGTCTATATAAGTCCATTCGAAATAAAAAT CTTTAATTTATGTTTAATATTTTATTTTAATTTAGCCCCCTCATTATATTTTTTCTAGTTCCGCCACTGGGTACAAGCAT ATCGTCTTCCAGACCAGCAAATGGTCCTCAGAGGTCTTCTGAGCAGCGGCCAACTTACCAAATCCCTGCTTCTGCTTTAT ATGAAAGTGGTGATGTACCAAGAACTTCGGGATCTTCAGTGCAAGCATTATCAGTTGTAAGCTCTGGTAAGGGATATATA TACAGCAGGGTTGATTTGGTTTTGTATTTTTCTTCTTTGATTCATCTGTTTAATCTGGCATTTAACTGTCATTTTGAATT AGATCAAGGTTTGGTTGATTCAAAATTGCTTAGTTGCATTGCATTTAAAAGATGTGGAGATATAGGGACTGTTTCAGTTC TAGAAAATCTTCTCATAGGTTTTGTGTGTAACTTTTTTGTTGACGCATGCATTTTTATATATCTGTTGCAGCTGAGCCCA GTGGATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAGGTCAAAACAA CCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTACAAATTTTGAGTGCAATCGTGACCGAGTGTT TCTTGGTCCTGGATACATTTTAGTTAAAACGGTCTGAATTCTAGTCTTTGTTTCAATGGAGTAATCTTATGATTGCTTCC TTTTGGATTCAGGGAAGAAAGGCCATCATATGGGTGATTATATTCCCCTTGAAGAACTTGAGAAGTTCATGGCTAGCTGT AATGATGCTGGAGCACAGAAAGTTTTGAAGGAGACTGCAGAGAAGGCCAAAATCCAGGCGGATAATGTGGGCCACAAGCT TCTATCAAAAATGGGTTGGAAAGAAGGTGCTGTATACTTTTCTCAGTTTTATGCCTTTCAAGAGGATTAATGAATCATTA ATGCATTTTATGTTAGCATGTTTAAGAAAATTTGCCTTTTGATATGGAATGTAACTACAGAACTTGCTTCAAGTTTTTGC CTTGTCTGATTTAAATAATTTGTTATATATTATTGAAGACTATTACATGATAATTACATTTATGTGATATTTATAAATTT ATATATCCGTGATATCTTGCACTGCTAACCATTATTATAATCTTATATCCAGGTGAGGGTTTAGGCGGCTCCAGGAAGGG TATTTCGGATCCTATCATGGCGGGAAATGTTAAGAAAGATCACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTGACTT CTGAAGATGACATATATGAGCAGTACAAAAAGCGCATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGGTAAATGAC CTCTCTATTCTGAACCGTTTTGCAGTGGTGACACGGTGAGTTACTTAACCTGTTCTCATGTTGTAATTGTTTTGTTTTTA CAGAACAATCCTCGCAAGGCGTATTACTGAACATCACGAATGAAGCCTTGTGCCATGTTCATTGTTGGAGATATGGATTG ATGTGGTAATAGGCTAACAGGATTTTGTAAACATTTATGTTTTATGATAGGTTTTGCATATGTTGAACATGATATTTTTC TTGTATTATTGGAGGGTAGGGATATGGTTGTGGTTTATCGACCACAAGTTAGCAAACGAAGGTAATGTTTTCACTGTTGG GCTTCGGAATATGTTATCTTTCACTGGCACTCTTGAGCCTGAAAGCTTGTTCATTTCAAGTTGCTTAGCAATTTTTCGAC TTAGCTATTGCGCGGTGCGCTTTGATATTCTAGTCACTCCAATAATATTCGGTTGTTAACTTCTTATTGGTTTAGTTTTG TAGCAGTAAATTTTTTAGGTATCTGTATTATTGAAAATCATTAACTTTAGTATCTTGTTTTTCAGTTGAATTCCTGAATT TTTTTCTTTTGG
CDS sequence (LotjaGi3g1v0059200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAGGGACCACCTCATAGCCTTTTTGTTAATGATGGTTCGTTCATGGCGAGGTTCAAGCAGCTTCAACAAGAGCA GGGGAAGGGGAAGAATACCAAATTAGAGGATTCTAAACCAATTAAAGTTGTTTCTAGACCGCTGACTCCTAATCCTTCCA TTGGTAAGGCTACTGATGCACGAAAAACTTCCCAGGCTGGTTCTAGTGGCAAACTTGCTTTCAGTTTAAAGCAAAAATCA AAGCTAGTTCCACCCCCTATTAAGTTGACTGATGAGGATGAAGAAGAAACTAATGCCGGGGATGTTTCAAATGACGCACC GTCGAAACGGCAAAAGTTGGGTCAGGATGATGATGCTGAGCAATCATCAAGACCACTTGATGTTGCACCTCCTTCACCTA GTGATCCTACTGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAACGGAAGGCAATTTGAGGATGTTACA CGCCAAAAAAATCCTGGCGATACACCTTTCAAGTTTTTATTTGATGAACGATGTGCTGACTACAAATATTATGAATATAG GCTCGGACAAGAGGAAAAGACCCTTTTGCAGTATAGGGAACCACAGGCAATTCATTATGTTCCGCCACTGGGTACAAGCA TATCGTCTTCCAGACCAGCAAATGGTCCTCAGAGGTCTTCTGAGCAGCGGCCAACTTACCAAATCCCTGCTTCTGCTTTA TATGAAAGTGGTGATGTACCAAGAACTTCGGGATCTTCAGTGCAAGCATTATCAGTTGTAAGCTCTGCTGAGCCCAGTGG ATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAGGTCAAAACAACCTA AGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGGAAGAAAGGCCATCATATGGGTGATTATATTCCCCTT GAAGAACTTGAGAAGTTCATGGCTAGCTGTAATGATGCTGGAGCACAGAAAGTTTTGAAGGAGACTGCAGAGAAGGCCAA AATCCAGGCGGATAATGTGGGCCACAAGCTTCTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTAGGCGGCTCCAGGA AGGGTATTTCGGATCCTATCATGGCGGGAAATGTTAAGAAAGATCACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTG ACTTCTGAAGATGACATATATGAGCAGTACAAAAAGCGCATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAA TCCTCGCAAGGCGTATTACTGA
Protein sequence (LotjaGi3g1v0059200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKGPPHSLFVNDGSFMARFKQLQQEQGKGKNTKLEDSKPIKVVSRPLTPNPSIGKATDARKTSQAGSSGKLAFSLKQKS KLVPPPIKLTDEDEEETNAGDVSNDAPSKRQKLGQDDDAEQSSRPLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVT RQKNPGDTPFKFLFDERCADYKYYEYRLGQEEKTLLQYREPQAIHYVPPLGTSISSSRPANGPQRSSEQRPTYQIPASAL YESGDVPRTSGSSVQALSVVSSAEPSGSSNADSLALMEFYMKKAAREERSKQPKQSKDEMPPPASLQGKKGHHMGDYIPL EELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPGEV TSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 433 | 430 | 8.0E-156 | – | |
| PANTHER | 4 | 433 | 430 | 8.0E-156 | ||
| MobiDBLite | 23 | 140 | 118 | - | – | |
| MobiDBLite | 56 | 75 | 20 | - | – | |
| Gene3D | 122 | 195 | 74 | 5.2E-23 | ||
| SUPERFAMILY | 125 | 190 | 66 | 8.11E-17 | ||
| SMART | 139 | 193 | 55 | 3.9E-15 | ||
| Pfam | 140 | 188 | 49 | 5.2E-13 | ||
| ProSiteProfiles | 141 | 184 | 44 | 13.31 | ||
| MobiDBLite | 209 | 234 | 26 | - | – | |
| MobiDBLite | 285 | 313 | 29 | - | – | |
| SMART | 348 | 395 | 48 | 6.3E-15 | ||
| ProSiteProfiles | 350 | 397 | 48 | 16.802 | ||
| Pfam | 351 | 394 | 44 | 5.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi3g1v0059200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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