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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0205100 |
| Transcript ID | LotjaGi3g1v0205100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G61190.2 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c; TrEMBL-Plants: tr|V7AMM2|V7AMM2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0205100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30096243..30103734) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTAAGAGGCTTGCACAAGAGTGAATGAAACGACTACCAAACCTGCGTTCACTAGGCTGCAACACATTCATCGTCTC TCTTCTTCTTCACCCCCATTTTGTTCCTCTCCTTCATCTTCCACCAAACCTCAAATCCCAAATCCACTCTCAGTCATGAA CTACGACTACACCAACTACAACCACCACCACCACCACCAACAACAGCCACATTCCTATGAATTGCAGTACGACCCATCTC AGGTTCAACCCTACGACCCATCTCAGATTCAACCCTACGACCAATCCTACGCATATCAACAACCCTATTACGCCTACAAT CACCAATACCCATATGTCGCTGATACCCATCAACCCCATCACCTTCAATTCCAGCCTGAACCCTCTCCGGTTCACCCCCC TGGTGTCATCCCAGCCGCTGCTGAACCGGGTCTCGCCAGACCTAGCCATGGCTCGGTAAAGTTTCCACCTTTTCCCCTTT TTTGGGGTTTTTATTGAATTGGGTCTATACCCTTTTGAATTCTTTGTTTTCTTGATTTAGTTGAGGTTTTTTAGTTAATG GGTATTTTAGTTTGTGGATTTTTATAGCGAAAATGTTGTGCTTTAAAATAATAATTGGGGGGTTCCATTGTGTGATTGAG TTGATTTGGCTTAGAGTAATGAGTAATTGGGACTGACTATGATTGTATTTAGTTATTTACCTCTTGATTTGCTTGAAATT GGGTTTCTTTTGTCAAATTTATCAAACATGGGATGGTTGGTGAGTGGTGACTGTTGTTGTGCTGATAGTTTGCTTGTTGG TGAATGTGAGGGTGGTGACTGGTGTGAGTTATTATTTTAACTGATAAGTGGATTGCTCAGTGTGAATACTGTGTGATTTT TATTTTTTTCTGCTTGTGTGTCCACTGAATTAGTGTTATTGGCTTCTTGTTGGTCCTTTTAGCGCTGCTGCTCAACTTGT CTTGTCGTTTAAACCAGTGATGTCAATAGCCCGCCAATAGGGCTATAGCATAGCACCCTGGGGGTTCACCGCTATTGTCC GCTCGCAATAGTGTTTTTTGGGCTTTCCGCTACGCTACGCTATCTGCCATTAACAACCCTGGTTTAAACACCAGTAGTGT GTATCCAAGTTACAAGGGATGAACTTTATTTCAATGTTGTCATTCTCAACAAATAGTCAAATACTGCTATATAGTTTATC ATTCTTTTAGAGTCTCTGACTCTGGGTGTTGTTAAATGGGGGCCATGGCGGTATTGTGTGGTGATTTTATGCCAAAATGA CCTTCTGAGGTCACGTATGGTGGCTTTTACATGGCGTTTTCTATTTCATGCCGGGTATGGCGACCTCTCTGGAAAATAGC ACCAAAGTCAACTTCAAAAAGGAAAAAAAGGGACGGGTAACACAGATCTGACCTGTTTTACACCCTAAAAGCCATTTTAT ACCCAACTTACCATCCATATCTCTGCCACCTCTTACTCGCAATTACGTGCTATCTCTCACCCGCGCTTCTGTCATCCCTC ACTCACACATGTCTGGTGAATATCCCATCTCCAGCATAATACCATTGTCCTATTTTTTTCTTTGTTTTGAGTCTCTATTC CGTGTCTGTGGCCATGTGTGTCAATACACACACGCGCGCACACACATACGTGACACACATATATATGTAACATACATATA TAAATAGACATACTTCCATAGGCGGAAGCGCCATTTGGCTTGCTTCCATGAACTTGCATATGCCATCAAATATTGATAAC GGTAGAGTCTTTCTTCTGAATCTCTCTTTCTCTCTCTATTTTTATTTTTTTATGCTATGGGGTGTGTATTCTTTATCCAT GTCATTGTAGCTTTAAGTCATGGAGGAGGGATGGAGAGACCATATAGTGGTTCTATCAAAAGTGCTTTTGTTGTATTGGT CTAACATCGGTAACTCACCTAAAACAGCTCCCAAGCCTTTCTGTGATTTTTTATGACCTGTGCCACATTACTGTATCTGG AAATTTGACCAACAACAACAGCCAAGTTTTATCTTCCTTGGTGGGTTGGCTTTATGGAATTATAGATCAATTGTTGCAGT CCAGCTCAATCAAAAACCAAATTTTTATGTGAAGTAAGGTTTTGCTAATAGTTTCTTGCAAGTTTTCTTTTCCTTCCTTC CTTTTAAATTGGACTATCTTTTAATGATGCAAAAACTCATTACCTTGAGGTTTAGTTGTTATCGTTGTGTTATGAGTGTC TATATATATACATTGGTGTACTCCTGATTCTGCTAACTTTGCCCAATGATCATGGCTGGGAAAAAAGAAGTTCCCTGGTA GCTTCTTTTACTTATGTCTCTTACACTGACTCTTCATTTGGGTTCAAAGAGAAAATGAGATGATAGAGAATGGATAGAAA GAAAGTGAAGAGAAAAAAACTGAAAAGAACATGAATGGATTTTTTATATAATGTAAAATAGTGGAGAATAAAAGTAAAAT GCTATTGCCATTTGCTTGGTTGGATGGAAAAGAGAGAAATAAAACAAATACAATTGATATAATGTCTTTTTAACCCTTGA TAACTTAAAAATAATCAAGTGGACTCCATATTAGATGAGAGACAAATTGATGTGTAAAGTTGAAATTGTCTCTTTGGAAT TTGTGTTTTCTCTCCATTTAAGAAGAGAAAACTCTGAATAGGCCCATATCTATTGCATCTCCTCTCCATTTTCTCTCCGC CCAAATTCAATCATATCAATTTCTACTCAACCAAACACAGTGAAACCAGATTAGTAGAAACTATGTTATGGAATTATCAC ATCTTTGTTCCAATTCCAAAATTAAGGATTAGTTTATGTTTAGTGCAGGTTCTGCATTTAATATTGCTAAGGTTATGGTG AGATTCAAAGAGGTGCATGTATTCTATGCCAATCAACCTGAGCTTTTTATTAGCTCTGGCAAGTTGCTTTGCTGAAACAA GATGATTTAAGATAGATTGAGTCAAAGTATGCCATTATTTTATTTAATTCAACATATTTGGTGCTAGCTAGTTTCTTATT TTACTACCAGAATTTAAAGATGTAAACAGAAAAGGCTGATTGAAGATTTTGCAACACTTTAACTTTCAAACATTTTGTTA TTCTTTTAGAGAGAATATCTTGCTGTGCTCCTCAGGCTCTTTTCGGACTTTCTCTGGACAAAAGGCTGATACTGGAATAG GTATTTTATCCTCGGTTTCCATCTAAAATATTCAGAGGATGTTGAGAATTCTGCAAACTTGGCCACAACATCCTAGAGTG ACCAGATAAAGGCATTAGTTACATGAAATACGCTCATAAGAAATTGTGGTTCTTACCTTTAATGCCACAGTAATGCCGCA TTGTGGTGGGTCTTTGCTGGTTGCTTTAGAGTTGATGTGGGCGTAAGATCATCCTATTTCTCTTCTTAACTGTCTGGCCT TTAAAGTACCAGTGCTGTGCCTTACAGTTTAGGAGAAGAAACTGTAAAGTCATCCTGTTTCTCTTCTTAACTGTCTGGCC CTCAAAGTAGCAGTGCTGTGCCTTACAGTTTAGGAGAAGAAACTGTAAAGCCATCCTGTTTCTCTTCTTAACTGTCTGGC CTTCGAAGTAGCTGTGCAGTGCCTTATAGTTTAGGAGAAGAAACGACAAGGTCATCCTGTTTCTCTTCTTAACTGTCTGG CCTTCAAAGTAGCAGTGCAGTACCTTACAGTTTAGGAGAAGAAAGTTTGCTCTTTTGGTTATTCTTTAGATATGATTTTT GTTTGATATGCTTTATTTCTTCTGTTGTCAGAGGGTGTTTCATTTTCAGTTTCAGACTTAGGGAAGCATTGAGCATGTTC TAAGGACCTTAAATTGACACTTGTCAAGGATTGCTTGATCAACAGTATCTCGAGGCTGACACGATTTGGCCAAAGTTCCT GGTCAATGGATGGGTATATTGGTTGATTAGAAAATTAGAAAATAAATTATATGTGAACGTAATGAGGAAAATCCATGCTT GTCATATGGTTTATCAACAAGAAAACTAATTTCTATATTCTATGTGGTGTTTTGTATGGGCACATCCAAGCATACTTCAA TACTGGTAGTGTTTCTATATTCTATGTGGTGTTTTGTTTGGGCACATCCAAGCATACTTCAATACTGGTAGTGTTTCTAT ATTCTATGTGGTGTTTTGTTTGGAGATCAAGTGGAGAAGGATAATTGTAAGCATGCAGCAACATGTATAAATGCTGGATT CAATGGTCATGATTAATCTGCATATGAATTTTGGAATAAGAGATGGTGACTCAGGGCATCTGGGACCATCACTGATTAGG GGCATTCAAACTGAAGGAAAGCACAAAAGACTAAAATTGTAAAGCTAAGAAGCAAAGGTTTTGATCAAATTGTCAAGTTG TTTTTCCATTTTATTTTATATTCTGGGATCCAACTACCTTTTTTTTTTTCGAAAGCAGAAGGAATTTCCAACTGCCCTTG TTATAATGCTTTTTGATGAGTACTTCAAGCATTTAACTTTATTGAAATGATATTTAGGAGTTTTTCAATATTTGAAATTT TGATTTTTTGATACATAGATGAAAATATATGCAAGAATTGGAATGATTCTTGATATTAAGGATGCCTCCTTGGAAGCAAT TTCAGGGCCATCACAGTCTCTTCTATTTGTTAATGTATGTGATAATTTAAAATGACTTTCTATTTCAAAGTTTTCTTTGA TTATCACCTGGCTCAATCAGAGATTCACTTTCTCGATCAGTTTTATCTGTCATTAATTTTTTTTTCTCCAGTATTTGCTA GCAGTTTTTTACTAACTGACTGACATTTCGTCATGTTGACAGGTTGTTGTGGATAGGATGAATTCTCAGTATTATAACTG TTTTCTTTTACTTCTCTCTCTTTCTGAGTATCACAATCCTTGTTTATGATTTCAATTTTATATTTCATTCCAATCCTTTC CTTTCAAATTTCCAATGTATTATCTGAATATTGTGAGGATATCCATTTATGTTTGAATTCACGTGAAGTTCTTATTTTTC AGGCCGGGCCATCTCAATATAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGACGGGGTGGCCGTGGTCGTGGTCGA GGCCAGTTCAATCATGGTAGGGGACATGGGGTGGGTGGTGGTGGACACTTTCCATCCCATACTTCAGGACCTGCTATTTC TGATGTGCCAGGTGCACCTGCTGCTGCTGGAGCAACCTCATCAATCTCTGGGCAAATGACAATACCTAATTCAGCTGAAG TGCCAGCTGCATCTGCTCAACCTCTATCACGTAAGATGTATTGTGAAGTTTGTAAGGCTGAGTGCAACAGTCCAGAAATC ATGGAACAACATAAGAATGGAAAGAGACATAAGAAGAATATGAAAATACATGAAGAATTACAGAGACGCAATAATTTAAA TGGACAACAGAGTGGACAGATTCCTACATCTCAAGTGAATTTGGCAGATCATCCTCAGAAAGTTCAGAACTCTGAGAAAA AGGAATGCCCCACAGAAAATATGGGCTCTGAAATTACAGCTGATTATGACAAGAATGAAATTAAGTTGCAGAATAATGTA GGAGAGACTTCTGAAGTTCCAGCTGAAGGGCCTGAGGGGAACACCACGGATAACTCTGCTCTAGGAGACCGTGGATTGAA GCGTAAAATGAGAGGAGGAAAAGTACGTAGAAACGCGAAGAAGACTACAGCACAACTTTCAGAAGCTGAGCAACCTACAA CTTTTATTTGTGAACTCTGCAATGCTAAATGTGAGTCCCCTGCTGTTTATAATAGTCATATGGCTGGGAAAAAGCACTTA GCAAATCTGAAGCGAGCAAATGGTTCCCAAGCTTTGCCTGGAGCAGGTAAACAAACTTCATCCACAGTAGTTCATCAACC TTTGCCTGGAGTATCAGGTCTTCAAGCACTATACCCATCCGACGTCAACGCTCTGGCGAATGCAATTAATACTCAAGTCC AACAAGGTGATAATGATCCACAGATACTTTTGGCTCAGCTTCTGATGACTGTGATATCTCAAGGACAAGGGCAAGCACCA GCAATTCCACCCACAGGACCTTTGGCTGGTCAGATACCAGAGCCCTCATCAGTGCCCGGATTAAGTCATGAACAACAATT GGCACAAACACAAGTGTCAGACATAACAGCACATGTTGAGATGGAAAATCCTGCTGGGGAAACAAATAATGAACTGTTAT CTGAACAACAATTGGCACAGACACAAGTGTCGGACATAACAGCACATGTTGAAATGGAAAATCCTGCTGGGGAAACAAAT AGTGAACTGTTATCTGTCTCAACAGAGTTTAATGCACTGGCAGGTTCAAGCGTTACCCAAATAGAAGGTGGAAGTTCTGA AACTAAGCCGTCCCAAGTATAGTTCAGGTATGACAATGGCAGACATCTCGTAGCAGGACCAAAGGAGATTCAACCATTCT TCTCTCCTTTTTTTTTTGTTTACCTTTGGTGTTAAAGACTTATTATATGTTGTTGGGTATGAATATTGTATGTTTTGCTC ACATGGATGTTAACATGTGCTAGAAATCCTTTACATTGCTGTTATGTGCAAACCCCTTTTTTAAATGTCCGTTGTTGTGA CAGCTTGGTGAAATGATGTTTTAACATTTTCATGCTACAATGAGCGCATCATTGAGGGAGTTTGATGGTACTAATGTTAT GAAGCTTTTGCATATGGATAGGTTTATTTTTGTCTGGTTAATGTAACCATTTCATTTACACAAGGTTATTAAAACCTTAA GCATTCAGAAGTTCGAGGTTACAAACAAGTTTGAAGAGTGAAGCATTGCATTATTCATGAGGGTATGCTAAAGCAAAGAT GTGAAATTGTGCAGGGTATAATAAATTTTCCCTAAAAAGTCCATAATAGAGTTGTATTCAAATGATGTATTTGCTTCTCT TAAAATTCCTATACAATCTACTTCAATTGGTCATTATTGATTTTGTTTAATATGGTTTAACTTTTGCCTCCCTTGGCCAT TCTTTTGTAGTTTTCTCCATGAACATGTATATTTTATCGTGTTCATATTTGAGTTCATGACTTCTCTAAGTTCAACCATA TTTTTGTTTTTTATCGCAATCATACGTTTGGTTAAACATGTGAGTAGTAAGTAACACATGTCGAGAACCCTTTTGGCGGG GTTAGGTCACGCGTAAAAATAGAGGTTACTATGGATATTTGAGTTTGGGTAGGATTTTTCCATTCCATAAATTTTCACAT CTGACAACTGAAACAAACTGTTTGGATTGATAGAAATTAGTTCTAAACAGACTCGTGAAACCAAACAAACTAAACCGTTC TTGTGTTGAGGTCGAATTGATCTTGTTGGTCGGGTCTACCTGACTTATGTGTAACTCTAATTATTTAAGTTTCTATCTAA ACAAACATAACATGAAATAAAATGAACGGATGATATAAGTTGAAACATTTTC
CDS sequence (LotjaGi3g1v0205100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCAATTTTATATTTCATTCCAATCCTTTCCTTTCAAATTTCCAATGTATTATCTGAATATTGTGAGGATATCCA TTTATGTTTGAATTCACGTGAAGTTCTTATTTTTCAGGCCGGGCCATCTCAATATAGAGGTAGGGGTGGCAGGGGTGGTA GACCATTTAGACGGGGTGGCCGTGGTCGTGGTCGAGGCCAGTTCAATCATGGTAGGGGACATGGGGTGGGTGGTGGTGGA CACTTTCCATCCCATACTTCAGGACCTGCTATTTCTGATGTGCCAGGTGCACCTGCTGCTGCTGGAGCAACCTCATCAAT CTCTGGGCAAATGACAATACCTAATTCAGCTGAAGTGCCAGCTGCATCTGCTCAACCTCTATCACGTAAGATGTATTGTG AAGTTTGTAAGGCTGAGTGCAACAGTCCAGAAATCATGGAACAACATAAGAATGGAAAGAGACATAAGAAGAATATGAAA ATACATGAAGAATTACAGAGACGCAATAATTTAAATGGACAACAGAGTGGACAGATTCCTACATCTCAAGTGAATTTGGC AGATCATCCTCAGAAAGTTCAGAACTCTGAGAAAAAGGAATGCCCCACAGAAAATATGGGCTCTGAAATTACAGCTGATT ATGACAAGAATGAAATTAAGTTGCAGAATAATGTAGGAGAGACTTCTGAAGTTCCAGCTGAAGGGCCTGAGGGGAACACC ACGGATAACTCTGCTCTAGGAGACCGTGGATTGAAGCGTAAAATGAGAGGAGGAAAAGTACGTAGAAACGCGAAGAAGAC TACAGCACAACTTTCAGAAGCTGAGCAACCTACAACTTTTATTTGTGAACTCTGCAATGCTAAATGTGAGTCCCCTGCTG TTTATAATAGTCATATGGCTGGGAAAAAGCACTTAGCAAATCTGAAGCGAGCAAATGGTTCCCAAGCTTTGCCTGGAGCA GGTAAACAAACTTCATCCACAGTAGTTCATCAACCTTTGCCTGGAGTATCAGGTCTTCAAGCACTATACCCATCCGACGT CAACGCTCTGGCGAATGCAATTAATACTCAAGTCCAACAAGGTGATAATGATCCACAGATACTTTTGGCTCAGCTTCTGA TGACTGTGATATCTCAAGGACAAGGGCAAGCACCAGCAATTCCACCCACAGGACCTTTGGCTGGTCAGATACCAGAGCCC TCATCAGTGCCCGGATTAAGTCATGAACAACAATTGGCACAAACACAAGTGTCAGACATAACAGCACATGTTGAGATGGA AAATCCTGCTGGGGAAACAAATAATGAACTGTTATCTGAACAACAATTGGCACAGACACAAGTGTCGGACATAACAGCAC ATGTTGAAATGGAAAATCCTGCTGGGGAAACAAATAGTGAACTGTTATCTGTCTCAACAGAGTTTAATGCACTGGCAGGT TCAAGCGTTACCCAAATAGAAGGTGGAAGTTCTGAAACTAAGCCGTCCCAAGTATAG
Protein sequence (LotjaGi3g1v0205100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISILYFIPILSFQISNVLSEYCEDIHLCLNSREVLIFQAGPSQYRGRGGRGGRPFRRGGRGRGRGQFNHGRGHGVGGGG HFPSHTSGPAISDVPGAPAAAGATSSISGQMTIPNSAEVPAASAQPLSRKMYCEVCKAECNSPEIMEQHKNGKRHKKNMK IHEELQRRNNLNGQQSGQIPTSQVNLADHPQKVQNSEKKECPTENMGSEITADYDKNEIKLQNNVGETSEVPAEGPEGNT TDNSALGDRGLKRKMRGGKVRRNAKKTTAQLSEAEQPTTFICELCNAKCESPAVYNSHMAGKKHLANLKRANGSQALPGA GKQTSSTVVHQPLPGVSGLQALYPSDVNALANAINTQVQQGDNDPQILLAQLLMTVISQGQGQAPAIPPTGPLAGQIPEP SSVPGLSHEQQLAQTQVSDITAHVEMENPAGETNNELLSEQQLAQTQVSDITAHVEMENPAGETNSELLSVSTEFNALAG SSVTQIEGGSSETKPSQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 498 | 478 | - | – | |
| PANTHER | 42 | 430 | 389 | 2.7E-78 | – | |
| PANTHER | 42 | 430 | 389 | 2.7E-78 | – | |
| MobiDBLite | 46 | 105 | 60 | - | – | |
| MobiDBLite | 51 | 68 | 18 | - | – | |
| SUPERFAMILY | 121 | 163 | 43 | 1.57E-10 | ||
| Gene3D | 123 | 167 | 45 | 4.2E-11 | – | |
| SMART | 128 | 162 | 35 | 0.0029 | ||
| SMART | 131 | 155 | 25 | 22.0 | ||
| Pfam | 132 | 155 | 24 | 1.1E-6 | – | |
| MobiDBLite | 227 | 246 | 20 | - | – | |
| MobiDBLite | 227 | 250 | 24 | - | – | |
| Gene3D | 263 | 315 | 53 | 1.1E-11 | – | |
| SUPERFAMILY | 275 | 311 | 37 | 3.17E-9 | ||
| SMART | 277 | 311 | 35 | 1.5E-5 | ||
| Pfam | 280 | 304 | 25 | 9.5E-9 | – | |
| SMART | 280 | 304 | 25 | 0.14 | ||
| MobiDBLite | 382 | 415 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0205100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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