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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0220800 |
| Transcript ID | LotjaGi3g1v0220800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9SZA4|CDC21_ARATH Cell division cycle 20.1, cofactor of APC complex; TrEMBL-Plants: tr|A5BP73|A5BP73_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0220800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33270615..33272333) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGCGGCGGGAACGTGGACCTCTCCGATCAAGTTCAAATCCCGATCCCTCTTCCATCACAGGAAGAGTTCCCAGGA AAACGTAACCCCTCAAACCCTTGATTTTACCGATTTGGGAATTTTCTTGTTGAATTTCTTGAGTTCTCACTCACTCAATC TTGGTGTTTTCTTGGAACAGTTGGACAGGTTTATTCCGAACAGGTCAGCCATGGATTTCAGTTACGCTCACTACATGCTG ACGGAGGGAAGGAAGAACAAGGAGGAGCCGGTGGTGACGTCGCCGTCCAAAGAAGCATACCGCAAGAAACTCGCCGAGGC TTTCAACATGAACCGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTCAACCTGTTGAAGCCATACCCAGTGATTTCT TTTCCCCTTCTCCTCCTCAATCCAAATCTTCCAAGCCCAGACGACACATTCCTCAGGTATTTTGATTTGCTTTGTGTTTC TGTGCTTGATTCTTGATTCTAATCAAATGTTTCGAATTGCACTCTAACTGTTTGTGAAAATTCCTTTTTGTTTTTCAGAG TTCTGAGAGGACATTGGATGCCCCTGATATAGAAGATGACTTCTACTTGAATCTACTTGACTGGGGTAGCAGTAATGTGC TGTGCATTGCCCTTGGAAACATTGTGTATCTCTGGAATGCTTCTGATAGCTCCACTGCAGAACTTGTTACTGTGAATGAG GAAGAAGGCCCCATTACAAGTGTTAGCTGGGCCCCTGATGGACGCCATTTAGCTGTTGGTTTGAACAATTCCATTGTCCA GTTGTGGGATTCTACTACTTCTAAACTGGTAAATACAAAATGCCATGCTTCTCATTTGTTATCCTTATGCATTCTGATGG TTTTAACATGCTACTTTTGTCATCTTTTGTGCTGAACTGTTGTTGATTATTGTAAAATTGAAAATGCTGATGATGCATTC TGATGATTTTAACATGGTTTGATTTGGTGTGTGCAGCTGAGAGTACTCAGGGGTGGACATCGAGGAAGAGTAGGATCACT GGCTTGGAACAATCACATCCTCTCAACAGGAGGAATGGAGGGTAGGGTGGTTAACAATGATGTGAGAATAAGGTCTCACA TTGTTGAAACCTACAGAGGACATAACCAGGAGGTGTGTGGGCTCAAATGGTCTCCCTCAGGACAACAATTGGCAAGTGGA GGCAATGACAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTTCCAACTCGCCGACCCGTTGGCTACACCGGTTCGA GGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAGGGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTG ACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCTTGAACACTATCAACACTGGCTCTCAGGTGTGTGCCCTT CTTTGGAGCAAGAGTGAGCGGGAGTTGCTTAGCTCGCACGGTTTCACCCAGAACCAGCTCACTCTCTGGAAATACCCTTC TATGCTGAAGATGGCAGAGCTCAATGGACATACCTCCAGGGTGCTGCACATGGCTCAGAGTCCAGATGGGTGTACTGTGG CCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTTTTTGGAACTCCAGAAGCAAGCAAACCATCTCCAAAGCGA AACCGCGAGCCTTTCGCTGATTTCAACCGTATCCGTTGA
CDS sequence (LotjaGi3g1v0220800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCAGTTACGCTCACTACATGCTGACGGAGGGAAGGAAGAACAAGGAGGAGCCGGTGGTGACGTCGCCGTCCAA AGAAGCATACCGCAAGAAACTCGCCGAGGCTTTCAACATGAACCGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTC AACCTGTTGAAGCCATACCCAGTGATTTCTTTTCCCCTTCTCCTCCTCAATCCAAATCTTCCAAGCCCAGACGACACATT CCTCAGAGTTCTGAGAGGACATTGGATGCCCCTGATATAGAAGATGACTTCTACTTGAATCTACTTGACTGGGGTAGCAG TAATGTGCTGTGCATTGCCCTTGGAAACATTGTGTATCTCTGGAATGCTTCTGATAGCTCCACTGCAGAACTTGTTACTG TGAATGAGGAAGAAGGCCCCATTACAAGTGTTAGCTGGGCCCCTGATGGACGCCATTTAGCTGTTGGTTTGAACAATTCC ATTGTCCAGTTGTGGGATTCTACTACTTCTAAACTGCTGAGAGTACTCAGGGGTGGACATCGAGGAAGAGTAGGATCACT GGCTTGGAACAATCACATCCTCTCAACAGGAGGAATGGAGGGTAGGGTGGTTAACAATGATGTGAGAATAAGGTCTCACA TTGTTGAAACCTACAGAGGACATAACCAGGAGGTGTGTGGGCTCAAATGGTCTCCCTCAGGACAACAATTGGCAAGTGGA GGCAATGACAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTTCCAACTCGCCGACCCGTTGGCTACACCGGTTCGA GGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAGGGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTG ACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCTTGAACACTATCAACACTGGCTCTCAGGTGTGTGCCCTT CTTTGGAGCAAGAGTGAGCGGGAGTTGCTTAGCTCGCACGGTTTCACCCAGAACCAGCTCACTCTCTGGAAATACCCTTC TATGCTGAAGATGGCAGAGCTCAATGGACATACCTCCAGGGTGCTGCACATGGCTCAGAGTCCAGATGGGTGTACTGTGG CCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTTTTTGGAACTCCAGAAGCAAGCAAACCATCTCCAAAGCGA AACCGCGAGCCTTTCGCTGATTTCAACCGTATCCGTTGA
Protein sequence (LotjaGi3g1v0220800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFSYAHYMLTEGRKNKEEPVVTSPSKEAYRKKLAEAFNMNRTRILAFKNKPPQPVEAIPSDFFSPSPPQSKSSKPRRHI PQSSERTLDAPDIEDDFYLNLLDWGSSNVLCIALGNIVYLWNASDSSTAELVTVNEEEGPITSVSWAPDGRHLAVGLNNS IVQLWDSTTSKLLRVLRGGHRGRVGSLAWNNHILSTGGMEGRVVNNDVRIRSHIVETYRGHNQEVCGLKWSPSGQQLASG GNDNLVHIWDRSRASSNSPTRWLHRFEEHVAAVKALAWCPFQGNLLASGGGGSDQCIKFWNTHTGACLNTINTGSQVCAL LWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRVLHMAQSPDGCTVASAAADETLRFWNVFGTPEASKPSPKR NREPFADFNRIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 401 | 401 | 4.4E-238 | – | |
| PANTHER | 1 | 401 | 401 | 4.4E-238 | ||
| Gene3D | 41 | 389 | 349 | 1.2E-122 | ||
| MobiDBLite | 49 | 86 | 38 | - | – | |
| SUPERFAMILY | 93 | 387 | 295 | 1.6E-59 | ||
| CDD | 116 | 386 | 271 | 2.03929E-42 | – | |
| ProSiteProfiles | 118 | 395 | 278 | 32.114 | ||
| SMART | 128 | 166 | 39 | 1.4E-4 | ||
| Pfam | 133 | 191 | 59 | 1.9E-7 | ||
| ProSiteProfiles | 134 | 175 | 42 | 12.079 | ||
| SMART | 169 | 207 | 39 | 2.1 | ||
| SMART | 211 | 250 | 40 | 6.0E-10 | ||
| Pfam | 215 | 250 | 36 | 2.5E-8 | ||
| ProSiteProfiles | 218 | 250 | 33 | 15.254 | ||
| SMART | 259 | 301 | 43 | 0.0061 | ||
| Pfam | 263 | 301 | 39 | 0.019 | ||
| ProSitePatterns | 288 | 302 | 15 | - | ||
| SMART | 304 | 344 | 41 | 150.0 | ||
| SMART | 347 | 386 | 40 | 4.1E-6 | ||
| Pfam | 352 | 386 | 35 | 3.1E-4 | ||
| ProSiteProfiles | 354 | 387 | 34 | 12.981 | ||
| ProSitePatterns | 373 | 387 | 15 | - | ||
| MobiDBLite | 391 | 412 | 22 | - | – | |
| MobiDBLite | 396 | 412 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi3g1v0220800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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