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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0291100 |
| Transcript ID | LotjaGi3g1v0291100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A151SUL8|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi3g1v0291100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59332170..59338066) extracted from Lotus japonicus Gifu genome v1.2.
AGGTCTGACTGGGATGATGGTAGATGGGAATGGGAAGATACTCCACGGAGAGATAGTTCTAGACGTCATCAACCTTCACC ATCCCCAATGTTCGTTGGTGCCTCACCTGATGCACGATTAGTTTCTCCATGGTTGGGGGGCCACACTCCCCATTCATCAT GTAATTCTAATTTCCAAATATCATGTCATTTTTTGTTACTGTAAAAATTTGGATGATTTTAATTTTTAACTATAGTCTTC TGAGAAATAACTTTATGTTATTGCTGAATTGAATGTAGTTACTTCATCTTCACCATGGGACCATGTTTCTCCCTCTCCTA TTCCAATACGTGCTTCAGGATCCTCAGTCAAATCTTCTCTTTCTGGACATAATGGAAGGTCACATAGACCGAATTTTTCT TCAGGAACTTCAAATACATATGAGGTATATTTTGCACCTAATGTGTGATAAGCCCCTTGTTTATTTCATAATTCATCATA GTTTCTAGACGTAAATGACTTTTACCATATCACAAAATAAAGGCAAGGTCTTAATATATTGAATGGTTTTCTTCTTTCAT GCTACTTTCAATATGAAAATAATGTATATATCATCATTACTAATTCAATATGTACAGGATGAAGTAGCGGATAGGTCCTT GGGTGAAGAGCACAAGTATGAGATTACTGAAAGCATGCGCCGAGAGATGGAATACGATGCTGACCGAGCATGGTATCTAA CTTTAGTTTTGAAGCTATTTTTCTTTGATATCTTTCTAAATCACTGTCCTGGATATGTGCAGTGTAAGATCAGACTGCTT AATAATATGTTGGAACAATATGCTGGTTCCTTTGTTGTGATTGTCTTCTTTAATTTTGTTTCTGAGAGTTAGATACTTAG ATTACTTATAGTTATACTTTATTAAATAAATCCAAAATTTAACTCATTATGTAATTTTTGCCTATCTTTAGTGGTGATAG AGCTGAAATGGTTGATGTTTCTTTCAGACTTACCATTGATTTACTAGTTCTATTGTTTCACATATTATAGTTTAATCTAG TAAGTATTATTGTTATGTAGGTATGATAGAGAGGAAGGTAGCACAATGTATGAGGCTGATAATTCATCAGTGTTTCTTGG AGATGAGGCTTCCTTTCAGAAAAAAGAGGCAGAGTTGGCCAAAAGACTGGTAATTTTAAGATTTTAAATCATATCTAAGC TAACTTTTCTGCATTTGTATGTGTGTGATTGTAATATATTTGGAGCTCTGCCACTGCTGTAAGTAGGTAAATTAAAGATA GTTGGATATATTTTAATATTTAAAAGCTTGTTTCTGAAAAGTTTACACCCTATATTTTGCATTTATAGATGGTAATGGTA AATGGTAGCATGGAAATTTTTCATCAACATGATTATTTGATTCTGTTATCTTTAGATCTCATCTAGCCAAATATTCAAGT TTATAAAGCTATTATTATGTTCAACTTAGTTGTGATTTAATTTTGGAGCAGTTACTTTGACTTTATCCGTGTGCTTGATT GTGGTGGTGGTAAGCTAGATGGATATACTTTAGCTTGTAATCTACTAAATTAGGTGGATTTTTTTTTATTTGCATTTGAA TATGGTAAAGCGGTATATAGTACACTTTTATTAAATGGACAACAAAATTAATGTCGGTTATAGATGCTCTTTTTATGTAT CAATTGGACCAATTCTAATGTCCCATTCTGCTTCTTGGAGTTGGTCTTTAATTTAACATTTCTATGTTTAGGATTGTTAT ATTTATCATGTGCTAAGACATGTCTGAAAGGTTATGATACCTATCCTATTCAACAATAACATGTATTTTTGGAACTTCAA AATTCCTAAGTTTGGTACTGGGCATGTAGTGTTCTCTGTAATCCTCTCTTGATGGTCTGCTATTGTTGTAAGTGGTATAT TTATTATGAATGATTTTGCTTATTTACAAAGTGTTCAGTGTGTTGGTGCACCTTGCATTATCTCTAGCAAGTTAGTATGA GTTCATTAAAGTTTGTATTGATAAAACAGGTCCGAAGAGATGGGACTAAGATGTCACTTGCTCAGACCAAGAAATTGTCT CAGCTCACAGCTGATAATGCTCAGTGGGAGGACCGGCAATTACTGAGATCAGGAGCGGTTAGAGGTACAGAGGTTCAGAC TGAATTTGATGATGAGGATGAACGCAGGGTTATTCTGCTTGTGCATGGTAAATATTCATCTGGCCAACTTTGACTGATTA ATGTAGGTTGCTTGGTTTCAGTCTTCTGTTTTTACTGATTATATATTCCCTGTTGGTCACAGATACAAAGCCTCCTTTTC TTGATGGCAGAGTTGTTTATACTAAGCAGGCAGAGCCAATAATGCCAATAAAAGATCCAACATCTGACATGGCTATAATT TCTCGTAAAGGATCTACTTTGGTCCGAGAAATCCATGAGAAGCAGAGTTCGAATAAGTCTCGCCAACGCTTTTGGGAACT AGCAGGCTCAAAACTTGGTAATATCTTAGGAGTTGAAAAGACAGCAGAACAGGTATTCTTTTGAAATAATCGTTACCTTT GCTTTATCTCTTCATGGTTTAAAGACTTAATTTTGTTCAATTTTTTTTTTCCAAATGCCAGATAGATGCAGACACTGCAA CAGTGGGTGAAGATGGGGAAATAGATTTTAAGGAGGAAGCAAAGTTTTCACAGCACTTGAAGAAGGGAGAAGCTGTGAGT GAGTTTGCTAAGTCAAAAACCATGGCAGAGCAAAGGCAATATCTGCCAATTTTTTCAGTGCGAGAAGAGTTATTACAGGT TGCTTTTTCTGTTACACACTTATTTATGTATGGGTTTTATTGCTAGGGTTTCTTTTTGCCCATATAACGAATGCAGTCTC AGCTTGAAAATTATTTGATGGTCACAATAAATTAGTCTAAATGCTCAAAATCAGGACATTGAATATCTTAGTCATTAAGA CCTACAGTCTTAATCCATCTGTATGTTATGTGGAGGGAGGATGGGTTGAGCACCTCAACTCAATATTTCTCTCTATTTTC GTGATTAAGTTGTCTGTTGACTACATTTATAATATTATATTATATTATGATTCTGTTATACACAAAACCAAGTCCCTTCT TTCATCCCATTAGTTGTGATTTGGCATATGTAATTTTTCATTTTTATATGCTTTTTTGAGCTGCTCTTTTCTGTTTTCAA TGTTCATATTTTGATTTTTAGTATCTTCAATAGTATCCACTTGTATTTTCTGTTTAAACATGTAGATCTTGGCTCATAAA TTTTTTTGTAATAATTTTCATTATATACAATGTGTAGGTGATTCGTGAAAATCAGGTGGTGGTAGTGGTTGGAGAAACTG GTTCAGGAAAAACAACGCAATTGACACAGGTTTTGATGTCCTATTCTTTTCCTTTTGTGTTTTAAATTGTGTATTTATGT TTATCTGATCAAGAAAGGGGAAAAAGGATAAGAATCACTCTTGATTGTCATAAATAAGTACCTATATTAACAAAATCGAC TTTGACATTTGGCTTTCTGAACAGTATCTTCACGAGGATGGCTTTACTATAGGTGGCATAGTAGGTTGCACCCAACCAAG GCGTGTGGCAGCTATGAGTGTTGCTAAGAGAGTTAGCGAGGAGATGGAAACAGAGTTGGGCGATAAAGTTGGTTATGCTA TCCGTTTTGAAGATGTGACGGGGCCAAATACCATTATAAAGGTGAACCATCTTATTTAAGGGATTGAGATTAATTATTAT CCTGTGTGTTACAATGTGCTATTAAGTATGATTACTTTTTTCATCATATTTATCCTTTATAGCATACATGCTGTGAACAT GCACTAAAATTATTAGACACATTTATCATATAAACTTTTTTGTGCTATGCTCTAAGCTTCAGTTGTTAAATTTTACAGTA CATGACAGATGGGGTACTTCTACGTGAAACACTCAAAGACTCTGAACTAGACAAATACCGGTATGGATATATTGGAAACT TTTGCCCCTGTCATTGCTTGCAATAAAATTACAATATTACTGATCATGTTGTTAAAACTGTTTCAGGGTTATTGTCATGG ATGAAGCCCATGAAAGATCATTAAGCACAGATGTTCTTTTTGGAATATTGAAGAAAGTTGTAGCTCAACGTCGTGATTTC AAGCTTATCGTCACTTCAGCAACTCTGAATGCAGAGAAATTTTCAAATTTCTTTGGAAGGTAATTTCAGTTCCTCGTTTA ACATTGTTTCTTGTTGTAAACTTCTGTTTGGTTAACCTAATTGGTGCATCCTTGCAGTGTGCCTGTTTTTAATATTCCTG GGAGGACATTTCCGGTGAATATATTATGGAGTAAAACCCCATGTGAAGATTATGTTGAAGGTGCAGTGAAGCAGGCTATG ACTATTCACATAACCAGCCCTCCAGGTGACATCCTTATCTTCATGACTGGCCAAGATGAGATTGAGGCAGCTTGCTATGC CCTTGCTGAAAGAATGGAGCAGATGGTGTCATCTGCAAAGAAAGAAGTCCCTAAACTATTGATTCTTCCCATATACTCTC AACTTCCTGCTGACTTGCAAGCAAAAATATTTGAGAAAGCTGAAGATGGAGCCCGTAAATGCATTGTCGCCACTAATATT GCAGAGACATCGTTGACTGTTGATGGTATCTACTATGTCATAGATACAGGCTATGGTAAAATGAAGGTGTATAACCCTAG GATGGGTATGGATGCTCTCCAAGTCTTCCCTGTTAGCCGTGCTGCTGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTG GACCTGGTACGTGCTATCGCCTGTATACTGAGAGTGCTTACCTAAATGAAATGTTGCCCAGTCCTGTTCCAGAAATTCAA AGGACTAACCTTGGCAATGTGGTCTTGCTGCTGAAATCTCTTAAAGTTGAAAACTTACTTGATTTTGATTTCATGGATCC ACCTCCACAAGATAATATTCTCAACTCTATGTACCAGCTGTGGGTATTGGGGGCCCTTAACAATGTAGGGGGATTAACTG ATCTTGGCTGGAAAATGGTTGAGTTTCCACTTGACCCTCCGCTTGCTAAGATGCTTTTGATGGGTGACCAGTTAGGGTGT CTAGAGGAGGTTTTGACAATCGTTTCCATGCTTTCAGTACCGTCTGTTTTCTTCAGACCCAAGGACCGAGCAGAGGAGAG TGATGCTGCACGTGAAAAGTTTTTTGTTCCAGAATCCGATCACTTAACCTTGTACAACGTTTATCAGCAATGGAAACAAC ATAGTTACAGAGGTGATTGGTGCAATGACCATTTTTTGCATGTCAAAGGTCTGAAAAAGGCTAGAGAGGTGAGATCTCAG CTGCTTGATATTCTCAAGACTCTAAAGATTCCCTTGACTTCATGCTTTCCTGATACAGACATTGTCAGGAAAGCAATTTG TTCTGCATACTTCCACAATTCAGCAAAATTAAAGGGTGTAGGAGAATATGTCAATAGCAGGAACGGGATGCCATGTAATC TTCACCCCAGTAGTGCTCTATATGGCATGGGTTGCACTCCTGAGTATGTGGTTTATCACGAGCTAATCCTGACCTCAAAG GAGTACATGCAGTGCGCCACAGCAGTGGAGCCCCATTGGCTGGCTGAGCTAGGACCCATGTTTTTCTCTGTTAAGGAGTC TGATACATCATTGCTTGAACATAAGAAGAAACAAAAACAAGAGAAAACGGCCATGGAGCAGGAGATGGAGAATTTGAAGA AGGTACAAGCAGAGCTTGAGCAAGAAAGGAAACAGAAAGAGAAGGAAAAGATGGCTCAGCATCAGCAGCAAATTTCCATG CCAGGTTTACGAAAGGGTTCTTCCACATACTTGAGACCAAAGAAGTTTGGTCTGTAA
CDS sequence (LotjaGi3g1v0291100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGTTGGTGCCTCACCTGATGATGAAGTAGCGGATAGGTCCTTGGGTGAAGAGCACAAGTATGAGATTACTGAAAG CATGCGCCGAGAGATGGAATACGATGCTGACCGAGCATGGTATGATAGAGAGGAAGGTAGCACAATGTATGAGGCTGATA ATTCATCAGTGTTTCTTGGAGATGAGGCTTCCTTTCAGAAAAAAGAGGCAGAGTTGGCCAAAAGACTGGTCCGAAGAGAT GGGACTAAGATGTCACTTGCTCAGACCAAGAAATTGTCTCAGCTCACAGCTGATAATGCTCAGTGGGAGGACCGGCAATT ACTGAGATCAGGAGCGGTTAGAGGTACAGAGGTTCAGACTGAATTTGATGATGAGGATGAACGCAGGGTTATTCTGCTTG TGCATGATACAAAGCCTCCTTTTCTTGATGGCAGAGTTGTTTATACTAAGCAGGCAGAGCCAATAATGCCAATAAAAGAT CCAACATCTGACATGGCTATAATTTCTCGTAAAGGATCTACTTTGGTCCGAGAAATCCATGAGAAGCAGAGTTCGAATAA GTCTCGCCAACGCTTTTGGGAACTAGCAGGCTCAAAACTTGGTAATATCTTAGGAGTTGAAAAGACAGCAGAACAGATAG ATGCAGACACTGCAACAGTGGGTGAAGATGGGGAAATAGATTTTAAGGAGGAAGCAAAGTTTTCACAGCACTTGAAGAAG GGAGAAGCTGTGAGTGAGTTTGCTAAGTCAAAAACCATGGCAGAGCAAAGGCAATATCTGCCAATTTTTTCAGTGCGAGA AGAGTTATTACAGGTGATTCGTGAAAATCAGGTGGTGGTAGTGGTTGGAGAAACTGGTTCAGGAAAAACAACGCAATTGA CACAGTATCTTCACGAGGATGGCTTTACTATAGGTGGCATAGTAGGTTGCACCCAACCAAGGCGTGTGGCAGCTATGAGT GTTGCTAAGAGAGTTAGCGAGGAGATGGAAACAGAGTTGGGCGATAAAGTTGGTTATGCTATCCGTTTTGAAGATGTGAC GGGGCCAAATACCATTATAAAGTACATGACAGATGGGGTACTTCTACGTGAAACACTCAAAGACTCTGAACTAGACAAAT ACCGGGTTATTGTCATGGATGAAGCCCATGAAAGATCATTAAGCACAGATGTTCTTTTTGGAATATTGAAGAAAGTTGTA GCTCAACGTCGTGATTTCAAGCTTATCGTCACTTCAGCAACTCTGAATGCAGAGAAATTTTCAAATTTCTTTGGAAGTGT GCCTGTTTTTAATATTCCTGGGAGGACATTTCCGGTGAATATATTATGGAGTAAAACCCCATGTGAAGATTATGTTGAAG GTGCAGTGAAGCAGGCTATGACTATTCACATAACCAGCCCTCCAGGTGACATCCTTATCTTCATGACTGGCCAAGATGAG ATTGAGGCAGCTTGCTATGCCCTTGCTGAAAGAATGGAGCAGATGGTGTCATCTGCAAAGAAAGAAGTCCCTAAACTATT GATTCTTCCCATATACTCTCAACTTCCTGCTGACTTGCAAGCAAAAATATTTGAGAAAGCTGAAGATGGAGCCCGTAAAT GCATTGTCGCCACTAATATTGCAGAGACATCGTTGACTGTTGATGGTATCTACTATGTCATAGATACAGGCTATGGTAAA ATGAAGGTGTATAACCCTAGGATGGGTATGGATGCTCTCCAAGTCTTCCCTGTTAGCCGTGCTGCTGCTGACCAGCGTGC TGGTCGAGCTGGTAGAACTGGACCTGGTACGTGCTATCGCCTGTATACTGAGAGTGCTTACCTAAATGAAATGTTGCCCA GTCCTGTTCCAGAAATTCAAAGGACTAACCTTGGCAATGTGGTCTTGCTGCTGAAATCTCTTAAAGTTGAAAACTTACTT GATTTTGATTTCATGGATCCACCTCCACAAGATAATATTCTCAACTCTATGTACCAGCTGTGGGTATTGGGGGCCCTTAA CAATGTAGGGGGATTAACTGATCTTGGCTGGAAAATGGTTGAGTTTCCACTTGACCCTCCGCTTGCTAAGATGCTTTTGA TGGGTGACCAGTTAGGGTGTCTAGAGGAGGTTTTGACAATCGTTTCCATGCTTTCAGTACCGTCTGTTTTCTTCAGACCC AAGGACCGAGCAGAGGAGAGTGATGCTGCACGTGAAAAGTTTTTTGTTCCAGAATCCGATCACTTAACCTTGTACAACGT TTATCAGCAATGGAAACAACATAGTTACAGAGGTGATTGGTGCAATGACCATTTTTTGCATGTCAAAGGTCTGAAAAAGG CTAGAGAGGTGAGATCTCAGCTGCTTGATATTCTCAAGACTCTAAAGATTCCCTTGACTTCATGCTTTCCTGATACAGAC ATTGTCAGGAAAGCAATTTGTTCTGCATACTTCCACAATTCAGCAAAATTAAAGGGTGTAGGAGAATATGTCAATAGCAG GAACGGGATGCCATGTAATCTTCACCCCAGTAGTGCTCTATATGGCATGGGTTGCACTCCTGAGTATGTGGTTTATCACG AGCTAATCCTGACCTCAAAGGAGTACATGCAGTGCGCCACAGCAGTGGAGCCCCATTGGCTGGCTGAGCTAGGACCCATG TTTTTCTCTGTTAAGGAGTCTGATACATCATTGCTTGAACATAAGAAGAAACAAAAACAAGAGAAAACGGCCATGGAGCA GGAGATGGAGAATTTGAAGAAGGTACAAGCAGAGCTTGAGCAAGAAAGGAAACAGAAAGAGAAGGAAAAGATGGCTCAGC ATCAGCAGCAAATTTCCATGCCAGGTTTACGAAAGGGTTCTTCCACATACTTGAGACCAAAGAAGTTTGGTCTGTAA
Protein sequence (LotjaGi3g1v0291100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVGASPDDEVADRSLGEEHKYEITESMRREMEYDADRAWYDREEGSTMYEADNSSVFLGDEASFQKKEAELAKRLVRRD GTKMSLAQTKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERRVILLVHDTKPPFLDGRVVYTKQAEPIMPIKD PTSDMAIISRKGSTLVREIHEKQSSNKSRQRFWELAGSKLGNILGVEKTAEQIDADTATVGEDGEIDFKEEAKFSQHLKK GEAVSEFAKSKTMAEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGFTIGGIVGCTQPRRVAAMS VAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSELDKYRVIVMDEAHERSLSTDVLFGILKKVV AQRRDFKLIVTSATLNAEKFSNFFGSVPVFNIPGRTFPVNILWSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDE IEAACYALAERMEQMVSSAKKEVPKLLILPIYSQLPADLQAKIFEKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGK MKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLL DFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGDQLGCLEEVLTIVSMLSVPSVFFRP KDRAEESDAAREKFFVPESDHLTLYNVYQQWKQHSYRGDWCNDHFLHVKGLKKAREVRSQLLDILKTLKIPLTSCFPDTD IVRKAICSAYFHNSAKLKGVGEYVNSRNGMPCNLHPSSALYGMGCTPEYVVYHELILTSKEYMQCATAVEPHWLAELGPM FFSVKESDTSLLEHKKKQKQEKTAMEQEMENLKKVQAELEQERKQKEKEKMAQHQQQISMPGLRKGSSTYLRPKKFGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 191 | 911 | 721 | 2.3E-285 | – | |
| PANTHER | 191 | 911 | 721 | 2.3E-285 | – | |
| Gene3D | 211 | 435 | 225 | 1.8E-87 | – | |
| SUPERFAMILY | 252 | 789 | 538 | 6.74E-129 | ||
| SMART | 258 | 442 | 185 | 8.2E-30 | ||
| CDD | 260 | 432 | 173 | 4.68802E-115 | – | |
| Pfam | 265 | 419 | 155 | 2.8E-7 | ||
| ProSiteProfiles | 270 | 433 | 164 | 19.324 | ||
| Gene3D | 436 | 613 | 178 | 3.6E-68 | – | |
| CDD | 437 | 602 | 166 | 3.06021E-74 | – | |
| ProSiteProfiles | 455 | 635 | 181 | 17.072 | ||
| Pfam | 465 | 594 | 130 | 1.5E-12 | ||
| SMART | 490 | 594 | 105 | 4.6E-18 | ||
| Gene3D | 637 | 743 | 107 | 2.5E-29 | – | |
| SMART | 655 | 745 | 91 | 1.1E-34 | ||
| Pfam | 658 | 744 | 87 | 7.8E-22 | ||
| Pfam | 802 | 879 | 78 | 1.4E-14 | ||
| Coils | 895 | 937 | 43 | - | – | |
| MobiDBLite | 918 | 958 | 41 | - | – | |
| MobiDBLite | 918 | 933 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0291100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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