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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0368100 |
Transcript ID | LotjaGi3g1v0368100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Peroxisome biogenesis protein 2; TAIR: AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2; TrEMBL-Plants: tr|G7LFV7|G7LFV7_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi3g1v0368100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75447175..75451107) extracted from Lotus japonicus Gifu genome v1.2.
AACAACTAAATAAATTTATTTATTTTTTTGGAAAATTTTCCCAGATCCCAGGAAAACAATTTAAAAGACCAAAACACCCT CGGCTCGCATTCCAAATTGCAAGTTCGACCGGATTCACTCACACACGGTCGTAAGCAACGCCCAGATCAGTGTTTAAGCA CTGACCAGATCATTCTAATCCTCCGTTTTCTCTCTCTTAACAACCCCAGGCGGTGGAGAGAGCCACCACCACCATCGTCG CCGTCACGCTATGACTAGCACCACCACCACCACCACCACTCTCCCTCCAGTTCCACCACAAGATGCTTGGACTCTCACTT GCCACAACTTGCTCCCTCGCTGGGAATCTCTCTCCCTCTCTCACCAGGTCCAATCCACTCCTATTTCCTGATTTAGGGTT AAATCATCTTCATATCCGTTTTTCCTCCTTCATATTGACTATTAGTTACTGGGTCTTCTTTATTTCGGAAAATTCTTCCC CTTATTGATAGAAAAATTGTTTTTTTCACACTTTCCCTCTTTTTTATAGTAGAAGCTTCCGTTCCCTATGGAATTTACTA GAGGGGTATCCTGAATTTCTGCTGGAATCAGGGGGATATATAATTTGATATGATTTTTATTTGAAATCGGAAGTTTTGTA TTTGATCAAGTTGCATATAGTGTGTTTGCTGTTGATTAAATTGTTATATCTGTGTGGGATTTTTCTGCAGTCGACGATCC CGGTTACTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCTGCCATGTTGAAAGAGCAGTTG GTTAAAGTGTTTGCTTTGATGAAGGTACGGTTATGACTTACTTTGTAATTGTGTGAAATGAGTCGTTGTGGTAATGGTGC TGCTGATTTGAAACTGGTTTGGACATCTTTAAAGTGTTCTTTTGTGTTTTTTGGGATTAGCCAGGAATGTTATTTCAGTA TGAAGCTGAGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAACTCCAGGCATTG CTCTCATGAACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGGTAAGAAGGTCTGAATCTCATCTGTC TAAGCAGGTCTTCGATGTTGTGAGATGGTCTTGAATTCTAAGGATTATTTGATAAGTTTTATGGGTTAAACACAAAGAAT TAACTTTTTGTAGCACACCAGCTATTGTCTGCATTACAAGCATTATGATTGATGTGCCCTGAATTAAGCGTAGTTCATGC CTTGAATAAGAAAGTTTCACTTACACGTGTTCAAACTTGACCCTCGAGTCTTTGCTGTATAAATTTTCAGTTTGACCTTA AATAATGAATATGCACATCATCCGTGATTATTTGTACTCTGCATCATTGTTATACAGCACACTGATAAAAGTTTGAAAAA TATTATTTCATGAGATGCTTCTTTGCTTTAACAAATCGATAGCATAGAGGAAGTACTTTTTTTTCATCTGTTACTACTGC ATATATACTTTGAGTGGGGTTTCGTTCATCCTAACTTCTCATTTGTCTGTGGTATATTCCACAGTCAGAACTGGTCTGGA GGGACCAGGACTCACAGTGGCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTAC AATCCTTCTCTGCATTTCGTAGATGGGGTGATACTGAGCAGGTAAATTTTTAAGTTGGTCCTTTCAATCCATACACTGCC CAACTTGCAAGCCTATAGGCCATAGTGGATAAAAGTGAGCTCTAACCTGAACTTAATTCTTTTCCAGAGACCATTAGCAC GGCGTTTATGGATCTTCATACAACGGATAGAAGGCATTTATAGAGCTACTTCATTTGGAAACTTGTTGATATTTCTTTGC ACGGGAAGGTGATTATTCAACAACCAGACAATCCACTCAGTTTGTGTCGTTCAATCATCTCCTATTTATGTATAAAGTTT TCAACCATATAATTGGCGGCATTTAGATTGAATCAGCTGCCCTAGAATTAGACTATCTCATGATTGATTTGCTCTGCTAA AATATATTTTCTTCTTGTGTGCTACTCTGATGCAGATACCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTGTA TGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAGTTAGTTTGGAATGAATTCTCGGTACCTT CCCCACCTCTTAATCAAATTTATTTGCTCTTTTAGTTTGTGGAATCTTATGGTTATGGGTTACATGAGATCAGGTCATTG TGCTATGTACTTTGAAAATCTCTTAAGACAGTTTATTTGCTTTGAATTCTTTTGTGTTGGGCACTATGCATTGTTTACCA GTTTCTTCTTATAATACTGGGAAATGTTATCAATCTTAGCTATTCAGTTTTCAATGAATCTGAGGTTCTGTTCGTTCTTC TGCTTGAAGTGTGCTGATACCTGTGTGATGATTCATTGATTAAATTAATCCCAGGCTGAAACACTCATCATATAATCATT CCCGTTACTAAATGTTTGCTACATATTCAGAATTCTATTATTTCTTGTAGATATTTTATGACATTGGGAACAGCTGGTTG ATATCTCGCAAATAGATTTCTCCCTCTGGATTTGATGTCAAATGAATTTACAAGAATGTTTCGATTCTGATTTTGTAACG ATTTGGAACTAATTATGCCCTGTTCTGATGGCAGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGA AAAATCTCCTTAAACCTTTTTCTAAGGATAAATCGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCT ACTCCAACCATTCCTTATGTTGCTATACCCTGTCATCACATGTACATCTCTAGCAAGATATGCACTCTCATGTCATTTTA TTTTTCGCCTGTTGAAGCTTTTTACTGGGCATTGCTTTTGGTAATTTGTTAGAACTTAATAGCAATGGAATGTTTGTAGA TGTTAGCTTTTATGTATGCAATCTTCAACAGAAGATGATTTTCATTGAAAGAGAAGGGCTTAAGCACTGATTTGCAAATT TCTTTGTGCCAGATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGGTGTTCCAGGTGCAGTG AGCCAGTTGTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGATTGTTACCAAGAGAGAAAAGGAATAATAATGTT AGGCTTAGGAAGTGTTTGATCTACGTACAGAATTATTAGCTTATAAAATACTACCTAAAATTGTGGTGGTATTTTCTTTC CTCTTTGTTTGGTTTCTCCCTTTTTATTCAGATTCAATGGGAAAATCAAATCAAAATTTCTTGGTAGCATCGCTTAGTCG ATCTAGGGGGATAGTATTATTCTTTATGTTGTAACAATGTATCATTCAGTGGCGTCTTATACACATACATTCGTTCTATT TTAACTTTTAAGTTCAAATTTGTATGCTTTGCGGTTTGACATCGCACGTTAATTCTCCTAAAATTTATAAAACTTTAGTC CCAAAATTGAATTGTAATTTTTCGCAAACACTGGGTATTATTCCGGTGCATGAAAAGAGTGAGTTGTTAGCCATTTCTAA ACATAACTGATATCACAGTGTGTGGATATCAAATATTATCAATTGAAATTATCGAGTGATCAGGTTGATTTAGATGAGTT CTTCCAGAAAGTATAAGAGGTGTATTGTACAGCAAGAGGCGGAGAGTACTGTGGTACAGTGAGGGTCCACAACGGCGAAG GTATCTGCAAATAATGTTCTGATGTTCAAGTCAGTGGAGGAACATGAAGTGAATCGAGTGCAATGGGCTTGATTCAGGTT TAGCATGAAGTGA
CDS sequence (LotjaGi3g1v0368100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGCACCACCACCACCACCACCACTCTCCCTCCAGTTCCACCACAAGATGCTTGGACTCTCACTTGCCACAACTT GCTCCCTCGCTGGGAATCTCTCTCCCTCTCTCACCAGTCGACGATCCCGGTTACTATATCAAGAGTTAACCAAGTTGATG CAGCGAGATTGGACGTTGAAATGTCTGCCATGTTGAAAGAGCAGTTGGTTAAAGTGTTTGCTTTGATGAAGCCAGGAATG TTATTTCAGTATGAAGCTGAGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAAC TCCAGGCATTGCTCTCATGAACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGTCAGAACTGGTCTGG AGGGACCAGGACTCACAGTGGCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTA CAATCCTTCTCTGCATTTCGTAGATGGGGTGATACTGAGCAGAGACCATTAGCACGGCGTTTATGGATCTTCATACAACG GATAGAAGGCATTTATAGAGCTACTTCATTTGGAAACTTGTTGATATTTCTTTGCACGGGAAGATACCGAAATCTTATTG AAAGAGCCTTACGAGCTAGGCTTGTGTATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAG TTAGTTTGGAATGAATTCTCGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTCCTTAA ACCTTTTTCTAAGGATAAATCGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCTACTCCAACCATTC CTTATGTTGCTATACCCTGTCATCACATATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGG TGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGA
Protein sequence (LotjaGi3g1v0368100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSTTTTTTTLPPVPPQDAWTLTCHNLLPRWESLSLSHQSTIPVTISRVNQVDAARLDVEMSAMLKEQLVKVFALMKPGM LFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVESRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARL QSFSAFRRWGDTEQRPLARRLWIFIQRIEGIYRATSFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQ LVWNEFSEMLLLLLPLLNSSSVKNLLKPFSKDKSSSSAEDGTICPICQATPTIPYVAIPCHHIYCYYCLRTRCAAAPSFR CSRCSEPVVAMQRHSGVSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 58 | 261 | 204 | 9.7E-37 | ||
Gene3D | 257 | 339 | 83 | 2.2E-8 | ||
SUPERFAMILY | 277 | 330 | 54 | 1.01E-8 | – | |
CDD | 284 | 325 | 42 | 4.78598E-18 | – | |
ProSiteProfiles | 284 | 325 | 42 | 9.863 | ||
ProSitePatterns | 300 | 309 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0368100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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