Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368100 |
| Transcript ID | LotjaGi3g1v0368100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisome biogenesis protein 2; TAIR: AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2; TrEMBL-Plants: tr|G7LFV7|G7LFV7_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi3g1v0368100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75447175..75451107) extracted from Lotus japonicus Gifu genome v1.2.
AACAACTAAATAAATTTATTTATTTTTTTGGAAAATTTTCCCAGATCCCAGGAAAACAATTTAAAAGACCAAAACACCCT CGGCTCGCATTCCAAATTGCAAGTTCGACCGGATTCACTCACACACGGTCGTAAGCAACGCCCAGATCAGTGTTTAAGCA CTGACCAGATCATTCTAATCCTCCGTTTTCTCTCTCTTAACAACCCCAGGCGGTGGAGAGAGCCACCACCACCATCGTCG CCGTCACGCTATGACTAGCACCACCACCACCACCACCACTCTCCCTCCAGTTCCACCACAAGATGCTTGGACTCTCACTT GCCACAACTTGCTCCCTCGCTGGGAATCTCTCTCCCTCTCTCACCAGGTCCAATCCACTCCTATTTCCTGATTTAGGGTT AAATCATCTTCATATCCGTTTTTCCTCCTTCATATTGACTATTAGTTACTGGGTCTTCTTTATTTCGGAAAATTCTTCCC CTTATTGATAGAAAAATTGTTTTTTTCACACTTTCCCTCTTTTTTATAGTAGAAGCTTCCGTTCCCTATGGAATTTACTA GAGGGGTATCCTGAATTTCTGCTGGAATCAGGGGGATATATAATTTGATATGATTTTTATTTGAAATCGGAAGTTTTGTA TTTGATCAAGTTGCATATAGTGTGTTTGCTGTTGATTAAATTGTTATATCTGTGTGGGATTTTTCTGCAGTCGACGATCC CGGTTACTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCTGCCATGTTGAAAGAGCAGTTG GTTAAAGTGTTTGCTTTGATGAAGGTACGGTTATGACTTACTTTGTAATTGTGTGAAATGAGTCGTTGTGGTAATGGTGC TGCTGATTTGAAACTGGTTTGGACATCTTTAAAGTGTTCTTTTGTGTTTTTTGGGATTAGCCAGGAATGTTATTTCAGTA TGAAGCTGAGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAACTCCAGGCATTG CTCTCATGAACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGGTAAGAAGGTCTGAATCTCATCTGTC TAAGCAGGTCTTCGATGTTGTGAGATGGTCTTGAATTCTAAGGATTATTTGATAAGTTTTATGGGTTAAACACAAAGAAT TAACTTTTTGTAGCACACCAGCTATTGTCTGCATTACAAGCATTATGATTGATGTGCCCTGAATTAAGCGTAGTTCATGC CTTGAATAAGAAAGTTTCACTTACACGTGTTCAAACTTGACCCTCGAGTCTTTGCTGTATAAATTTTCAGTTTGACCTTA AATAATGAATATGCACATCATCCGTGATTATTTGTACTCTGCATCATTGTTATACAGCACACTGATAAAAGTTTGAAAAA TATTATTTCATGAGATGCTTCTTTGCTTTAACAAATCGATAGCATAGAGGAAGTACTTTTTTTTCATCTGTTACTACTGC ATATATACTTTGAGTGGGGTTTCGTTCATCCTAACTTCTCATTTGTCTGTGGTATATTCCACAGTCAGAACTGGTCTGGA GGGACCAGGACTCACAGTGGCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTAC AATCCTTCTCTGCATTTCGTAGATGGGGTGATACTGAGCAGGTAAATTTTTAAGTTGGTCCTTTCAATCCATACACTGCC CAACTTGCAAGCCTATAGGCCATAGTGGATAAAAGTGAGCTCTAACCTGAACTTAATTCTTTTCCAGAGACCATTAGCAC GGCGTTTATGGATCTTCATACAACGGATAGAAGGCATTTATAGAGCTACTTCATTTGGAAACTTGTTGATATTTCTTTGC ACGGGAAGGTGATTATTCAACAACCAGACAATCCACTCAGTTTGTGTCGTTCAATCATCTCCTATTTATGTATAAAGTTT TCAACCATATAATTGGCGGCATTTAGATTGAATCAGCTGCCCTAGAATTAGACTATCTCATGATTGATTTGCTCTGCTAA AATATATTTTCTTCTTGTGTGCTACTCTGATGCAGATACCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTGTA TGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAGTTAGTTTGGAATGAATTCTCGGTACCTT CCCCACCTCTTAATCAAATTTATTTGCTCTTTTAGTTTGTGGAATCTTATGGTTATGGGTTACATGAGATCAGGTCATTG TGCTATGTACTTTGAAAATCTCTTAAGACAGTTTATTTGCTTTGAATTCTTTTGTGTTGGGCACTATGCATTGTTTACCA GTTTCTTCTTATAATACTGGGAAATGTTATCAATCTTAGCTATTCAGTTTTCAATGAATCTGAGGTTCTGTTCGTTCTTC TGCTTGAAGTGTGCTGATACCTGTGTGATGATTCATTGATTAAATTAATCCCAGGCTGAAACACTCATCATATAATCATT CCCGTTACTAAATGTTTGCTACATATTCAGAATTCTATTATTTCTTGTAGATATTTTATGACATTGGGAACAGCTGGTTG ATATCTCGCAAATAGATTTCTCCCTCTGGATTTGATGTCAAATGAATTTACAAGAATGTTTCGATTCTGATTTTGTAACG ATTTGGAACTAATTATGCCCTGTTCTGATGGCAGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGA AAAATCTCCTTAAACCTTTTTCTAAGGATAAATCGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCT ACTCCAACCATTCCTTATGTTGCTATACCCTGTCATCACATGTACATCTCTAGCAAGATATGCACTCTCATGTCATTTTA TTTTTCGCCTGTTGAAGCTTTTTACTGGGCATTGCTTTTGGTAATTTGTTAGAACTTAATAGCAATGGAATGTTTGTAGA TGTTAGCTTTTATGTATGCAATCTTCAACAGAAGATGATTTTCATTGAAAGAGAAGGGCTTAAGCACTGATTTGCAAATT TCTTTGTGCCAGATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGGTGTTCCAGGTGCAGTG AGCCAGTTGTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGATTGTTACCAAGAGAGAAAAGGAATAATAATGTT AGGCTTAGGAAGTGTTTGATCTACGTACAGAATTATTAGCTTATAAAATACTACCTAAAATTGTGGTGGTATTTTCTTTC CTCTTTGTTTGGTTTCTCCCTTTTTATTCAGATTCAATGGGAAAATCAAATCAAAATTTCTTGGTAGCATCGCTTAGTCG ATCTAGGGGGATAGTATTATTCTTTATGTTGTAACAATGTATCATTCAGTGGCGTCTTATACACATACATTCGTTCTATT TTAACTTTTAAGTTCAAATTTGTATGCTTTGCGGTTTGACATCGCACGTTAATTCTCCTAAAATTTATAAAACTTTAGTC CCAAAATTGAATTGTAATTTTTCGCAAACACTGGGTATTATTCCGGTGCATGAAAAGAGTGAGTTGTTAGCCATTTCTAA ACATAACTGATATCACAGTGTGTGGATATCAAATATTATCAATTGAAATTATCGAGTGATCAGGTTGATTTAGATGAGTT CTTCCAGAAAGTATAAGAGGTGTATTGTACAGCAAGAGGCGGAGAGTACTGTGGTACAGTGAGGGTCCACAACGGCGAAG GTATCTGCAAATAATGTTCTGATGTTCAAGTCAGTGGAGGAACATGAAGTGAATCGAGTGCAATGGGCTTGATTCAGGTT TAGCATGAAGTGA
CDS sequence (LotjaGi3g1v0368100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGCACCACCACCACCACCACCACTCTCCCTCCAGTTCCACCACAAGATGCTTGGACTCTCACTTGCCACAACTT GCTCCCTCGCTGGGAATCTCTCTCCCTCTCTCACCAGTCGACGATCCCGGTTACTATATCAAGAGTTAACCAAGTTGATG CAGCGAGATTGGACGTTGAAATGTCTGCCATGTTGAAAGAGCAGTTGGTTAAAGTGTTTGCTTTGATGAAGCCAGGAATG TTATTTCAGTATGAAGCTGAGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAAC TCCAGGCATTGCTCTCATGAACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGTCAGAACTGGTCTGG AGGGACCAGGACTCACAGTGGCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTA CAATCCTTCTCTGCATTTCGTAGATGGGGTGATACTGAGCAGAGACCATTAGCACGGCGTTTATGGATCTTCATACAACG GATAGAAGGCATTTATAGAGCTACTTCATTTGGAAACTTGTTGATATTTCTTTGCACGGGAAGATACCGAAATCTTATTG AAAGAGCCTTACGAGCTAGGCTTGTGTATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAG TTAGTTTGGAATGAATTCTCGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTCCTTAA ACCTTTTTCTAAGGATAAATCGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCTACTCCAACCATTC CTTATGTTGCTATACCCTGTCATCACATATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGG TGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGA
Protein sequence (LotjaGi3g1v0368100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSTTTTTTTLPPVPPQDAWTLTCHNLLPRWESLSLSHQSTIPVTISRVNQVDAARLDVEMSAMLKEQLVKVFALMKPGM LFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVESRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARL QSFSAFRRWGDTEQRPLARRLWIFIQRIEGIYRATSFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQ LVWNEFSEMLLLLLPLLNSSSVKNLLKPFSKDKSSSSAEDGTICPICQATPTIPYVAIPCHHIYCYYCLRTRCAAAPSFR CSRCSEPVVAMQRHSGVSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 58 | 261 | 204 | 9.7E-37 | ||
| Gene3D | 257 | 339 | 83 | 2.2E-8 | ||
| SUPERFAMILY | 277 | 330 | 54 | 1.01E-8 | – | |
| CDD | 284 | 325 | 42 | 4.78598E-18 | – | |
| ProSiteProfiles | 284 | 325 | 42 | 9.863 | ||
| ProSitePatterns | 300 | 309 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0368100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…