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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386200 |
| Transcript ID | LotjaGi3g1v0386200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mechanosensitive ion channel protein; TAIR: AT4G00290.1 Mechanosensitive ion channel protein; Swiss-Prot: sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial; TrEMBL-Plants: tr|A0A0S3SYM0|A0A0S3SYM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78198139..78203521) extracted from Lotus japonicus Gifu genome v1.2.
AATTTGTAGGACAGTTGTCTTATTTTGCAAGCAAAGAATGAAGAAGGGGACAAAAAAATTTCGAGATTTTTGTCATAGAA GAAGATGCGACTTCAAGTTCAAGCAGCAACACTTGTGTCATAATTTTCTCGCTGCTTCCATTTCCGTTTGGTTCCCGAAA AAACCCACGAAAATGGTAAGACCTTATCACCTTGTCCGCGACACCATCTTCATTTCCCCCCTTTTCTTCTCACACACTCT GGGTTTATCAATTGATTCAATTACTGAGCTTTTCTAATTTCAATTTAACCTAACTGTCTTAAAGTTTATGTAATTGCAAA TTGGTTTGTGTTATGGAATTTGCAGATTGATGCGTTACTCGAACAATGCCGTTGTTGAATTGTTGAGTTGATAGCTTAGT TTGCTTAACAATGGCGTCTGTTAGGTTTTCCCATTTAAGACATCTACATAGTTCAATCAATGGTTCTCTTAACACGAAGC TAGTTCCACAGTACCAAAATCACCACAATGTAGCTATGAACCTTGCAAGGTTGCCTTGTGATTTGTTGTCCCGTCCTTAC TCCAAAGGAGAGTCACAGTCACCTAGGGTTTTTGCTCAGAACCAGTTTACCAATGCCTCATTTTATCCTAGGTCATCTAG CTTTTGTCTCCAGGGTACTATTCCTTTTGCTTCCATGACCCACATGTTGAGTAGCCGAAGTTATTCGTCGTCGTTGGGTG GAAATGGTAGCAAGGGTGGTGGTGACACACAAGTTTCTGCTGGTTCTGGTGTGAGTGATATGAATGCTGGTGGTGGTGGT GATTGGGCTGAGAGGGTTAAAGATACTTGGAAGAGTGTGGTAGAGACGGCATCGTATGCGGGACAAAAGGTTAAAGAAGC TTCTGATGATCTTACTCCACATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACGCGGTGGTTATTCCGGTTGGTG GTACTTTAACTGCTACTCTAGTAGCTTGGTTCTTGATGCCTACGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGT CCTGTTGCTCTAATTCCAGGAAGCTTGTTTGGGGAACCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTCTGGAAGACCC AGTGCGATATCTAGTTACCTTCATGGCATTCTCACAAATGTTAGTGGGTTTTTTAAAAGTTTTAGAGATATGCCTTACTG TTTTCTCATATGTGTTTTTTCACTACATAGTTTACTTTGATTTCCAGTGGTGTAATGGTAGCTCCAACAACCATAGCCTC GCAATATCTTGCACCAGCTTGGAGGGGTGCGGTGATACTTTCGTTTGTATGGTTTCTGCATAGATGGAAAACTAATGTTT TTGCACGGACATTGTCTGGTCAAAATTCACTTGGACTTGATAGGGAGAAATTACTTGCTCTAGACAAAATCTCATCTGTT GGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTAT AGGAGGTAAATCTTTTTCTTTGGTTGCTTCCCATTCCTTGACGAGTTTCACTTGTTTATGTATTTATTTTTATTTTTCTA TGATAAAATAAGTAATGGAAGATTTCATGGTTCTGTATATCTTTTTACAGGAGTGGCGAGTGCTTTTGCTGCCAGAGATA TTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCTAAGCCCTTTTCAATTGGAGATACAATAAAAGTATGTTGA TTCAGTAGGTGCAACTTAATGTCCAATCCTGTCTTACTTTTTATGGAAAAATAATTTTCTGAACCATGGTCTTTCACTCT TGCTATCTGTTTTGCATGTGAATGTCCTATTCGTACTTATGTTATCTAGGTGAGGAATGGCCATTACATTTCACTGCTTA GTACTTACACAGTTTCACGTTTGGTAATAGAAATATTACACTCATTAGTGGTGATTTGTGTCGATGGTCCATTATGTATT ATATGGTATGTAATGCTATGTAGATGTTGCATGTACGTCCAGGGTTAGGATTAGGGTTAAAACATTAGAGGGGCCTAAAT AAAAACAAATTTAGGTGAGGGTTTAAAAAATTAAAATTCAAGGGCCCTAACCCTAACATATTTATTACGAGATTATCAGT CAATGCATAGACAATATTACAAAATTTGGAAATTTTGGAGGATCACATGCTAGAATGAAGGTCTGCTTCTGTTTACATCC TATATTTCTCTTCTTAAATGTGTATGAGAAATTGTACAAATTGCAGGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGG GTCTTACTACCACATCTTTACTGAGTGCTGAGAAGTTCCCAGTCATAGTGCCAAACTCCTTATTCTCTAGCCAGGTGGGT AATCTCTTCTCCCTCCTCACTTCCACTGCAGTCACTTAAGCGAAGCAGAGAAGTGAGCTCCACAATTTAACATTGGTGGA GCCTACGTATATTGCTTCTCTGCTTTCTCTAACTGCAAGTATGCCATGACCTCAAAAGAGCCAAATCTTTTCTGAACACT CAAACATTCCGAACCAATCACGTTGATCTTTGGCACAAATATATCTTAAAAAGATATACAACTTGCTGGGAAGTGCTCAC TTCATCTGCATGTCTGATTGTCTGTTGCTCATAGTTGATTGTAGTATTTAAACTAAGTACTCTAGGTTCTCCTATGACTC ATCATGTTAGAGTTTTGTTGTTTGACTTTCCAAGCAATAGTTTGAGTAGGCTTCTTGTATTCTTGTTCTTATAGTTTGTG TATAATTCTGTTTGTTAGATTGCGGTGATCTTTTCTATCCTTGGCTTTTTAAATCATAATATTCAAGGAAAAAGATAAAT ACGAAGATGAGTATCATGGAAGAAAAAGTTCTGGGATGTGAATGTATTTCAAACGAAATATGTTTGTTGCTTATCATTAA GAGAAAAAAATACTGGGAAAATAAGTAAAAATATTTTTTGGTTTCATTCATTAATCATTACTCTCTTGGTCAAATAATTT GATAATAAATTACCATGTCCTTGTCCTTCATGGTTAAATTCTGTTAGATGTTGTCTTTACACACATCTAACCATTATTTT CATCAGTTTTTAAGATGTCTAATTTACATAGTTGATTGGACCTATTTTTAAATTAATTTTTTTATTCCCTTTTTTCTGGA CTTGAATATATCTTCTAGGCATCTTTTCCTCCTCAGAATGTATAAATTTTGAAGCTCGCACTGAGGTTTACACATCTGCA CGAACACACAAAAACTGATGCAAAAGCTTTTTCCTTAATCTTTATAAAAATGTTTCTTGCTTAAGCTTTTGATCTTGAGC TTATGATCTACCTACTGCTTCCGTCATCATAGTTACACCCTTCTTATTGCTGCTAACTTTGTAGGTCATTGTGAACAAAT CCCGTGCTGAATACCGTGCCATTATTACGAAAATTCCTCTGCAAATTGAGGATTTAAGTAAGATTCCTCAGATATCAGGC GATGTAAAAAACATGTTAACATCAAATGCGAAGGTTTTCCTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAGTAGA AAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAGCACATGGTATGCCACTCTTCTGAATTTATTCACAATATGC TTGTTCATACTCAATGAATCTTTTTTGTTCATAAAATGCTTTTGGAAAAATTATTCTGAAATGGCTTTAAATATTAGAAG TTGGCATACTTTCATATTAAAACACTAACAATTACCTACTCTGTGTCCTGGTTAGGGAGTACAATATGGAGATGATATGA TTATGTTTGAAGTTTCCTTTGCTTCAATTTATATTGCATTAATTTGGCTTGGATTTCCAGCTTGTTTTGCATTTGTTTTG ACTTTTGACTGATCAAGAAGCATGCAAAAGATAGGTCTTTGTGTCTTATCACCAATAGTGAAATATAAATTAATATCTAA TAGAAAAACAGCAAGGTGCAGTAGAAGTAATGACATGGCCAACTGTCCTGGGAGTCTCGTGTCATTTTATTTTCTGATAG ATTCTGAAATAGAGATAAGTGGATCTCTGAGCTAAAAACTTCAGATATGAAGTTGCATAGCTTATGTTTTATTCACCTGG TCTGAGATAAAGTGTATGTCAATCAGTTCTTATTCCTGCTGGAGTGCTGGGTTTCTGATTTCCACTTGATGCCAAATGCT TAAGTGTGTGTTAGGATGGATACACTTGAGTGCAACGTGAATGAACTTTCATTTCAATTCATAAGAAGAGTTTTGTCCAC TTTTTTATCTTGAAGTGCATGCTAATGTATGTTTACTTTAGTGGCAATGGATTTTTAAATTTTAAACATAGTCTAAGTTG ATAGGAAGTGAGTCAATTATATATGTTAGCTTTAATAATCCTTGCGGGGGTTTGGAAACTCAATTAATATAAAGTTTAGG CAACAGACATTTCATAATTATTACGCCAGTTGTTGTGCAAGGTTTACATGATAACTTGGTAAGGTCCTTTTATGAAAATG TGTGCACCCTGCTGCACCTTCAAGAAATGTAGTTAGTTAAATTGGAGTTTAGGATACTGGTCGAGACTGCTGAACTATTT CCATAGCTTTTAGTAATTGGTTTTTATAAGAAGGTATTATTGTTTTTCGAACAGTGATCCAGTATAGTGCTTTCTATCTT TTGAACTTCATTATCTAGTGCTGTTTTAGGCAATGGTGATATATCTTTATGCTGAAATACCTCCATATTTGGTTGAACAT CTTCTTATCCCTCATCATTCTTGCAGCGCAAAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCCGTTCAG ATCATTAAAAATCATGGGATTGCCCTTGGCAGCACAGGGCAGGGCATGTCTACTATGTAATGATGACAATTTTACTAGTA CAAGCTTTGCAGGGATACTCATTTTTGTCATTGGTTGCAGCCAAATTAATTTTGTAACTAATACTAGTTGGGCCTGTATA GTTGGATCATTTGGCTTCAGGTTTTAATTGATTTACTAAACAATTTAAAATTTTACATCTATGACTATGAGTGAGTTCTA TAGTATGTTTTTTGGAGTTGTAATTTAGGAGACATGGATACCACCAGCTTTGGCCAAGGCTGTGTAAAGTTGGAAAGGTG GTATCCAGTGGTGAGTGGCCAAAATCATATCATGAAAGCTTCACCTGTGGATTGTTACTATTGGACTGCTCGGCATAAAC TTTTTACTTTTGACAGTTGACGCACAAATACACAATGCATAGTTAATTAATCATATTAATATTTAAAACAAAAAGTATAT TTTAATTTATTTTTATAACAAAC
CDS sequence (LotjaGi3g1v0386200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTGTTAGGTTTTCCCATTTAAGACATCTACATAGTTCAATCAATGGTTCTCTTAACACGAAGCTAGTTCCACA GTACCAAAATCACCACAATGTAGCTATGAACCTTGCAAGGTTGCCTTGTGATTTGTTGTCCCGTCCTTACTCCAAAGGAG AGTCACAGTCACCTAGGGTTTTTGCTCAGAACCAGTTTACCAATGCCTCATTTTATCCTAGGTCATCTAGCTTTTGTCTC CAGGGTACTATTCCTTTTGCTTCCATGACCCACATGTTGAGTAGCCGAAGTTATTCGTCGTCGTTGGGTGGAAATGGTAG CAAGGGTGGTGGTGACACACAAGTTTCTGCTGGTTCTGGTGTGAGTGATATGAATGCTGGTGGTGGTGGTGATTGGGCTG AGAGGGTTAAAGATACTTGGAAGAGTGTGGTAGAGACGGCATCGTATGCGGGACAAAAGGTTAAAGAAGCTTCTGATGAT CTTACTCCACATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACGCGGTGGTTATTCCGGTTGGTGGTACTTTAAC TGCTACTCTAGTAGCTTGGTTCTTGATGCCTACGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCTGTTGCTC TAATTCCAGGAAGCTTGTTTGGGGAACCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTCTGGAAGACCCAGTGCGATAT CTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACCATAGCCTCGCAATATCTTGCACCAGC TTGGAGGGGTGCGGTGATACTTTCGTTTGTATGGTTTCTGCATAGATGGAAAACTAATGTTTTTGCACGGACATTGTCTG GTCAAAATTCACTTGGACTTGATAGGGAGAAATTACTTGCTCTAGACAAAATCTCATCTGTTGGTCTATTTGTGATTGGT ATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTGGCGAGTGC TTTTGCTGCCAGAGATATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCTAAGCCCTTTTCAATTGGAGATA CAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCTTTACTGAGTGCTGAGAAGTTC CCAGTCATAGTGCCAAACTCCTTATTCTCTAGCCAGGTCATTGTGAACAAATCCCGTGCTGAATACCGTGCCATTATTAC GAAAATTCCTCTGCAAATTGAGGATTTAAGTAAGATTCCTCAGATATCAGGCGATGTAAAAAACATGTTAACATCAAATG CGAAGGTTTTCCTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAGTAGAAAGTTCATATGCAGAATTGACTCTTGGA TACAACCTCAAGCACATGCGCAAAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCCGTTCAGATCATTAA AAATCATGGGATTGCCCTTGGCAGCACAGGGCAGGGCATGTCTACTATGTAA
Protein sequence (LotjaGi3g1v0386200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVRFSHLRHLHSSINGSLNTKLVPQYQNHHNVAMNLARLPCDLLSRPYSKGESQSPRVFAQNQFTNASFYPRSSSFCL QGTIPFASMTHMLSSRSYSSSLGGNGSKGGGDTQVSAGSGVSDMNAGGGGDWAERVKDTWKSVVETASYAGQKVKEASDD LTPHAQQLLDSHPYLNAVVIPVGGTLTATLVAWFLMPTILRKFHKYAMQGPVALIPGSLFGEPVPYEKSFWGALEDPVRY LVTFMAFSQIGVMVAPTTIASQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGQNSLGLDREKLLALDKISSVGLFVIG IMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKF PVIVPNSLFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIPQISGDVKNMLTSNAKVFLGKDVPYCFLSRVESSYAELTLG YNLKHMRKDELYSAEQDILLQAVQIIKNHGIALGSTGQGMSTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 173 | 173 | - | – | |
| MobiDBLite | 100 | 121 | 22 | - | – | |
| MobiDBLite | 100 | 130 | 31 | - | – | |
| PANTHER | 126 | 517 | 392 | 3.4E-186 | – | |
| PANTHER | 126 | 517 | 392 | 3.4E-186 | – | |
| Phobius | 174 | 196 | 23 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 197 | 237 | 41 | - | – | |
| Phobius | 238 | 260 | 23 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 261 | 265 | 5 | - | – | |
| TMHMM | 264 | 281 | 18 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| SUPERFAMILY | 267 | 350 | 84 | 1.96E-8 | ||
| Phobius | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 325 | 21 | - | – | |
| Pfam | 310 | 512 | 203 | 4.4E-35 | ||
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 326 | 330 | 5 | - | – | |
| Phobius | 331 | 350 | 20 | - | – | |
| Phobius | 351 | 523 | 173 | - | – | |
| SUPERFAMILY | 352 | 417 | 66 | 6.87E-14 | ||
| Gene3D | 368 | 416 | 49 | 2.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0386200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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