Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0427000 |
| Transcript ID | LotjaGi3g1v0427000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; TAIR: AT1G17720.1 Protein phosphatase 2A, regulatory subunit PR55; Swiss-Prot: sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; TrEMBL-Plants: tr|A0A0S3SZW2|A0A0S3SZW2_PHAAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Found in the gene: LotjaGi3g1v0427000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83776919..83784620) extracted from Lotus japonicus Gifu genome v1.2.
AACAACGGTGGCGATGAGGTCGTCGAAGCTCCGCCGGCGGGTCCACCACAGCCGCTGGATTGGAAATTCTCCCAGGTTTT CGGTGAACGCACGGCTGGGGAAGAGGTTCAGGAAGGTAATTAATTGTTCTTGCTTTGTGTTGTCGATGCTCATCGGATCC AGTTGATTGTGTTACGATTAGGGTTTGTTTCTTTGCTCTCGATCCGTTTTGGATCGTGTTTTGTTCCTCCCTTGTTGTTT TGGCTTGTGGGTCATTGCATCTTTGATGTTTGATTCTCAGGGTCTTGTTTGATTTGGGTTATGCATTACTTGGTTGGATT GATATCAGTGTGAAACTGAGCTTTAGAGTTAAGAATAGTGGTTTCCATTTTGGCTTTGAATTTTTTGCTCTTAGCTGCTG CTTGTATTCTGGGCAGTTATTGTTGTGGTGAGTTTGTATGTTTAGTTTTCAGTGTGAGTTTGAGTGCTAGGTAGATCTTA ATGGTGCAGAGTTTGATGAGTGGCAATGAAGATTAGCTTCAGGGCTCAGGGTGGTAGTGTTTGGTTGGTTAAGTTTCAAT GGTGGTGTTGGAGGTGTCTCATGACTGTGAGCTGATGTTTGTGAGAATGGGCGTGTAACAAATGTGTCTAAGTCGGCGGT TGAAGGAATGGCATTATATGTCAAGAAAGAGACTAGAGTATATGTTGATAAAATATATGTCGTGTAACTGTTACACTAAA GTCCTAGTTGGAATTTGAGAATGAGTGTGCATCCAGCATTCGGATGGTAGCACTATATTCTCTATTGGTTTGTCGTTATT TGCATTGAAATTAGTTTATTACTAGTTCAAACATTTCGATGAACCAACCAAACATTTTCTCGTAAGTCCTAACTGCATAT CTAATTCTGATAGCTTTGCTATTAGTCTTAATGATAATTAAAGAGAGCCAACCACAAAGTATAACTGAACTTCAATTTTT CAGCTGCTACCGAAAGCAAAGAAAGAGAACAAAGACTCAGATAGTAAATAAATGTTTAATTGTTCTGAACAGAGTGTAAA TAGAATGTACAACATATTAGTTTAATCATTTTCAATATGAGGGAGATAAATATATCTTGTTCTCTGGAAATTGCATCTGT CTGATCTAGCTGATTTGATTCTACATTTGGATAGTTTTGGATTGGATATCTTTGGCACGGTACCATTGCAAGATTATGGC GGTAGAGATTTGGACGTGGTGAAAGGCTGTTTTTTCAACTGAAACCTTCTGCTTTTTTTTATGGCCACTATAACTCTCAG TAAACCTGTACTGCAATACTCATGTCAAACTTTAGCTAAGATATATTTTCATTGCTTACATGAATGGAAAGAAGCAATTC CAACATGGGTGGGTTCTTGTTGGGAATTTATTTTCTGCATATAGACACCATTAACAGTATGGTACAGTGATTGACCAAAT TGGGCATCCTTTCTTGCGGATTAAAGTGTCCTAATTTTTTACCCATTTTCTACAGTGGACATAATTTCTGCTATTGAATT TGACAAGTCTGGTGATCATCTTGCTACGGGTGATCGAGGTGGTCGAGTAGTTCTCTTTGAGCGCACAGATGCAAAAGATG TATGTATGATTGTTCCTTCTGCCATTGTTTTTCATTTGGAAGCAAACTTAGTTTCGATACTCAATATAAAATATAAATGT TCACTTTAAAATGCAGCATGTTTCGAGAAGGGATTCGGAGAGGATGGACTATTCAAATGTTGGTAGGCATCCTGAGTTCC GTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGGTAATTTATAGTCCCCACTCCCCAGTAATTTGAAGTAACTACCTG TAGCTCATAAATGCTAATATATATGTCATTTGATCATTGTTTCAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAA AATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTCTTCCTTTTATCTACAAATGATAAAACAATTAAATATT GGAAGGTATGGAATGAATGCTCAGTTATGGCATGCTGTTTGCTGTTTTTCTTAATCAGTTTTTTTTTGTATGGCAGACAT GGATACATTTCTGTAGAACTAAGTTCAGTCCCTTTCTTAAATGCCTTGACAGCATAACTGTTAATGGATACTGGAGCAAG TAGTTGTAGTATGGTAGTTAGCCAGCTTGAGTCATGAGTAACTACCATATGTATCATGGCTTATGAAGCCCATGTATCTG GGTACTATCGAATCTGTTGCCTGGGTTTCGCCTTTGGAAATAACCAATTTTTTATAGACAAAATTTTAGTTAACCATATT ACACTGCATGTAGAGGGCTATCTTTAGTGCACCTCTACATATAGCTGTTCACTTTCAAATGCATAATTTCATGACTCGCT TATGAACACTTCTATAGTTAGAGGAAATTAGTTAAAACTATTTATTAATGCAGTTTGTGATCTTGATGGTCCATTGGTTT TGTGATTGTACTATTATACTAAAGGCATTGAGAAGACAGAATTTTGTGAGAAGTAAATATGAAAATGGCTATGCTGTTCA AAAAATTCCCGATGGGATCTGCACGGTGTTTGCTTGTGCATGTATTCAAAATGAATATGACTATATTTCCTTCAGTAGTT TTTCACATCAATTAAATAGGACTGATATGTCTTCTAGGCCTCTTATTCTTTTTTGCTCTTATCTGAGAATTTAACAGGTT CAAGAAAAGAAGGTCAAAAAAATTACTGACTTGAATGTTGACCCTTCAAAAGCAATGGGAAATGGTTCTATTGCTAGTTC AAGTAATTCCAGTAGCTCTAGGCCATATCTTGCAAATGGAGAGTCTCCAGAAAGATCGCACAGTTATCTAAGCACTGATT TCTCATTTCCACCAGGAGGCATACCTTCGCTAAGATTACCCTTGGTAAATGTATTCAGCTCTCCTATTTGAAGTCTTCTT TTATAGTTCGGTATAAATATTAAGTGTGAATATTTACAATGAACAACCGAGAAATTAGTGAATTAACACGAAACATACAA AGCTCTGCAATGCATACTATGGACATTTTTTCTGTTTGAATGGAGTCCCGACTTTGTTTTATTTTTTATTTTGGGAGGGG AGGGGAGGGGAGGTTATCCAAAGTGAGATGTAATCTTGTCCTTTTCATGATTCATAATTCATTATATTATGAAGGTATAT GTTGAACATACAAGGCCTGGTGCAACTTGGAACTTGCAAGAGACCTTTTGCAGTTGATTTCGTCATAGTTGTTAAGGTCT TTTAAAAAAAGAAACTGAAATTTCATTAAAGATGTGAAAGAGTAAAAGCATCATGCTGGTAGTTGATATCAAAAGTAGTC CTTAAGTAGGCAGAGGTAAAGAACCAAATCCCTATATTAAGTCACTGAGATAGTTTTAAAACTTGGCTCGAATCGGCTGG TTTGTAAGCTAGCTGGGAAACTTATCCAAGTGGCATTTTAGTCCGGTTCTATTTAAGAAGTGGTGTGACTCAATTTGACT TCGCCGGGTTTCAAAAAAACTGGTGACTCGGCCTGGTTAACTTGGTCAAAAAACGGGTTGACTAGGCCAACTTCTGTATT TATCAAAACAAATTTTGTATTTTACTTGTAATGAAAGGAAAAAACTAAAAAAGGCTTATGGCATTGTAAAGGTAAAAGAT ATTTGACTCCTTTTTAGCATAATATAATTGTGTTTTTGTATTCTTATAATTATAATTTGGTCTTGCACAATATATTAAAC CTTGATAATTTACTTGTATTTTTACCTAACGACTCAACCGGGCTGAGTTAATAACTGGTTTCATTGATCTTGATAATGAA GGCTGAAAAAGAGACAGAATACAAGTAAACACATTTTTACCTAGGTAGAATTTTTAGCCTCGTTTGTGGACTCCTTGATA ATGAAGGCTGAAAAAGAGACGGAAACAGAAAGACAAACATTGATCTTTGATTTATTGTTGTGATTGTTCCATCCTTGTAG TTGTAGTGTTTATTTATGTATATTCTCGATAGATTATACAAGAGGGCGGAGAGGAAAGGGGTTACAGTTCTAAGCTTCTT TCTCAAACCTTGACAATTACATGTTTGAGATTTTGTAGTATGCTAGTGCTAACATATGGGTTGTATGTATACGTAGGTAA CCAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTCGAGTGTATGCACATGCTCATGATTATCATATCAATTCTATTTCC AATAACAGGTGATTTTAGTTTTGTTATTGACAGATTGTGTACCGTATTTTTCTTTGTATTAAATTTTAGGTGCTGCTGAG AAACCATCTGGGTCCATAGTGTAGGCTGTCCAGTATCAAATCTTACGTTTTCGTTATATTTTTGTTCTCTTCATTTAGTG TCGATTTGAAAATGCTAATTAGTTTTCTTTCTCAAGTGTTGTTTCATATCTGCACGATTTTGTGTTCTTGTTTTTGTTAT TGTATGCTTTTCTAATATCTGATCGCATTTCGATTATGGTATGTTTCAATATCTTCTAGCGATGGCGAAACTTTCATATC AGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAGCAACCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAA ATATGGAGGATCTAACTGGTAAGCTCTTACTATTATGTTATATTTTGTGCTGAAAATATTTCTCTGTTGGTAACTTGGAA AAATTTCATTTCAAAAAAAGAACTTGGAAAATTCATGTAATTGAGTAAGGATAACAGCTTAGAAGTTAGTGTTTTATGTT CATTTTGCATGTATAAATCTTTCATCTCTGTGATGTTGAACGACAGTAAGATTAGGATTTAAATCACAATCAGGGTTATC TGGGTGAATCAAGGGTAGATAACAAGTGACTTGAAGGTTCTTGGGTGCATATTTTGTTAAGGGATATTTGCAAGCAATTG GATGGGTTTTTTATGGTCGATTGATGGCTGTTTAGTTGCTGTGACCATTACCTGCGTATTTATTGTTGGGGATTTGATGA GTGTTAGGAACAATTGAAGTAAGAATCAACTATTGCTTTGATGGGTTGGAATTTTTATGTCATTTGGCGAAGAAATTTGA ACTTTGCAATTATTCCTCTGGATTTGATTGCACCGCAACCTGTCAGACAGCAATGTGCTGCCATACTTTCATAAGTCTGA TCTTCTGTTTAAAAGAAAGCATTATGCTTGTTTGAATAAAGCTTGTATAACTCATCCCGCAAGAATGACGAATAAGATCC GAAACCAATAAGCATGAAGAGTCCATCCTACTACTACTGTACGGTGTAGGAAAATGCGCCAAAATAATGTGCTTCAGGCT TTTACTTACGGTGCCAGATCCAAGAAGGATTCAGTGCCTCCTGAGCCTAAGGGTGCGTTTGCGAGTTGAGTTTTGGAGGA GTGGGTAGGGAAGGGAAGAGAGAGGCTTCCAAGAAGCCCTCCCCTTGTTTGTGAGTTTTTAAGAAGGGGGGAAGGGTTTG GGGAATTTTTGAATACCCTCCAAGACCCTCTCTTAGTTATATTTTCTAGTTCCCCCAAGTTGGGGGTTTTGGACTTTCAA ACAAGGGAAGGGCTTTCCCTCCTTCCCCCCTCTCCTCCCCTAAAAACTCAGAAACACACCCTAAGGCATGCCTGTATCCC TGTAGTAGCTAATTGATAACTTTAACCTTGCCCCCTCCCACCACTCTCACTCAAACACAAAAAGGTAAGGTGGAGATAAT TAGAACAATAGAATGTAAAAAAAAGTATAAATAGTTATTTTGGATGGGGTTTTGTGAACACCTCTGGAATTTCTTATATG TTTTCTAATATTTCTTTTGGCTTGATTCTTTTCTTCTAGTGTTGGTTGAGCTTTGACCGTAGGTATTATTATTATTTCAG AGGTTATAACATCAGCGGAATTTCACCCTACACATTGTAATACATTAGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTG ATTGACTTGCGGCAGTCAGCCTTATGTGATTCTCATGCCAAACTGTAAGCTCATCTTTTGTGAACGTGTCATGCTTGTCT ATTTCTGTTATGTTAGACCGAATAAGTTTTGGAGATAATTTGGAAATCAAAATGTTCCCTATGGAAAAAAAAAAGCACTT TTCTGAAGCCTAGTATGTAAATATGTATGTAAGTAATTTCTTATGCCTAGTAGTCTCACAGACAATTACCTTCTCAACAG ATTTGAGGAGCAGGAGGCCCCAGGGTCTAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGCAA AGGATGGAAGATATATACTCAGTCGTGATTATATGACTCTAAAGGTTTGAAATCATTATCATTACAAAATTATGCTTTTG TCACCTAAACTTTTCTGAGTATTTTGGATGTAGATACTTCAAATGTGTTGAATTGAAATGAGACATGGGACATGGGTATC TTATCTCAACGAATTGTTGCTTATGGTGAAAGGGATCCCAAGTTTAATTGGATGTTGAAAATTTGGTTTGGTTGTTGAAT CCCATGAGCAAAATTGATATTTAAATTAAAACTATCTGTTCCGTGGACTTTCAGTTATTGTTGATGGTTACAATAACACA CAGCATTCTGTCATTTAAAAGTTGTTTGGGTCTTGTGCGTTATGCTCTAAATTTCTCAAGCCCCATCTCATTTTACTTTA CTTGTTTGTCAGTTATGGGACATCAACATGGATTCAGGCCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAA GGTAGAATTCTTCTAGATTAGCGATGAGCTATGAATTTCTGCTGCTTTATTGAATTATAATAATAACTGGCTTTTTTATT TGGAATTTGCAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATC ACGTGTTTCAACTGGTTCTTACAGGTCCCTAATTCAAACTTCATCTGTGATTTTGTTAACTTTGAATTCTGCATCTTACT ATTTGTTTCCTTTGATGCCAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGTACTGAGGCTACGACTTTGGAAG CCAGTAAAAATCCAATGAGGTAATTTTATATTGGAAGTTCTAACACCAGCTATAAATTAGTTCAGCATTGTGGCATTTAT ATGATTTTTTTTTTTCATCTCCTCAGGCGACAAGTTCCAACTCCTTCAAGGCCTGCTAGATCACTGGGGAACAGTATAAC TAGAGTTGTAAGACGTGGTAAGTTTTCTATCTGACAAACTTGATTAACTGGAGTTTTCATCATATAGGGTGCGGTTGGGG AAACAACTTAATTAAGCGTTTATCGCCTAAGCACTTGTTCATAAGCTATTTTGAAAAACTTATTGAAATAAGGTTAAAAA TAGGTTATAAGTAAGCTAAGCTCTCTCAAACACCTGCACAAGTTTTTATACTATAAACTTAAATGAGCTCTTACTAAAGG GGCCATAATCTTGTTCTCACAACAATTTTATAAAATCTTGAACAGGAGCTGAAAGCTCTGGTGTTGATGCAAATGGGAAT TCTTTTGATTTCACGACAAAGTTGCTGCACTTGGCGTGGCACCCAACTGAAAATTCAATTGCTTGCGCTGCTGCGAATAG CTTATACATGTACTATGCTTGA
CDS sequence (LotjaGi3g1v0427000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTATTCAAATGTTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTA TCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTCTTCCTTTTAT CTACAAATGATAAAACAATTAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAAAAAATTACTGACTTGAATGTTGACCCT TCAAAAGCAATGGGAAATGGTTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGGCCATATCTTGCAAATGGAGAGTC TCCAGAAAGATCGCACAGTTATCTAAGCACTGATTTCTCATTTCCACCAGGAGGCATACCTTCGCTAAGATTACCCTTGG TATATGTAACCAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTCGAGTGTATGCACATGCTCATGATTATCATATCAAT TCTATTTCCAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAG CAACCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTAACTGAGGTTATAACATCAGCGGAATTTC ACCCTACACATTGTAATACATTAGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTGATTGACTTGCGGCAGTCAGCCTTA TGTGATTCTCATGCCAAACTATTTGAGGAGCAGGAGGCCCCAGGGTCTAGATCATTTTTCACAGAGATTATTGCTTCTAT CTCAGACATAAAATTTGCAAAGGATGGAAGATATATACTCAGTCGTGATTATATGACTCTAAAGTTATGGGACATCAACA TGGATTCAGGCCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAACGATTCA ATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCACGTGTTTCAACTGGTTCTTACAGCAATCTATTCCGTGT GTTTGGTTGTGCCCCGGGAAGTACTGAGGCTACGACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCAACTC CTTCAAGGCCTGCTAGATCACTGGGGAACAGTATAACTAGAGTTGTAAGACGTGGAGCTGAAAGCTCTGGTGTTGATGCA AATGGGAATTCTTTTGATTTCACGACAAAGTTGCTGCACTTGGCGTGGCACCCAACTGAAAATTCAATTGCTTGCGCTGC TGCGAATAGCTTATACATGTACTATGCTTGA
Protein sequence (LotjaGi3g1v0427000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYSNVGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKITDLNVDP SKAMGNGSIASSSNSSSSRPYLANGESPERSHSYLSTDFSFPPGGIPSLRLPLVYVTSHETSLLARCRRVYAHAHDYHIN SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSAL CDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDS IFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPARSLGNSITRVVRRGAESSGVDA NGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 436 | 436 | 1.9E-285 | – | |
| PANTHER | 1 | 436 | 436 | 1.9E-285 | ||
| PIRSF | 2 | 436 | 435 | 4.2E-174 | ||
| PRINTS | 11 | 39 | 29 | 1.1E-147 | ||
| SUPERFAMILY | 19 | 428 | 410 | 3.21E-29 | ||
| ProSitePatterns | 24 | 38 | 15 | - | ||
| SMART | 24 | 64 | 41 | 21.0 | ||
| PRINTS | 40 | 68 | 29 | 1.1E-147 | ||
| MobiDBLite | 84 | 109 | 26 | - | – | |
| SMART | 144 | 183 | 40 | 0.92 | ||
| Pfam | 147 | 183 | 37 | 0.12 | ||
| ProSitePatterns | 153 | 167 | 15 | - | ||
| PRINTS | 155 | 182 | 28 | 1.1E-147 | ||
| ProSitePatterns | 170 | 184 | 15 | - | ||
| PRINTS | 183 | 210 | 28 | 1.1E-147 | ||
| SMART | 194 | 234 | 41 | 11.0 | ||
| PRINTS | 211 | 239 | 29 | 1.1E-147 | ||
| PRINTS | 240 | 267 | 28 | 1.1E-147 | ||
| SMART | 253 | 291 | 39 | 250.0 | ||
| PRINTS | 268 | 295 | 28 | 1.1E-147 | ||
| PRINTS | 296 | 321 | 26 | 1.1E-147 | ||
| PRINTS | 322 | 348 | 27 | 1.1E-147 | ||
| PRINTS | 405 | 434 | 30 | 1.1E-147 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi3g1v0427000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…