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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0478700 |
| Transcript ID | LotjaGi3g1v0478700.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A0L9V6L2|A0A0L9V6L2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0478700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89483451..89487526) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTGGG TTTTCTTCTATGGTTGCAATGAAATGAAATGATGGTTTATAGTTAACAATAATCATGGTTAGATTTATTAAACCGCCACG GCGTTTGAGGGCAATTGGGCATTTATTACAGCTAATGAGTTGAACTAGTGATATTTGATTCTCGGCGTAGTTAGAATGTT AGATATTATCTGTGTTCATGATTTAGGGTGCTTTTGATTAAACAACTTAATTAAGCTTGTCATTAATCACTTAAGCTGTT ATGCAAGTGTTTCGGTAAGTTGCTCATGAATAAGCGCCTATACGGCTATACCTATCTATAAGCTGTTTTAAGCTAATTTC AACAGACTTCTCAAATTAGCTTATGTGGTAAGCACTCAATTAAGTTGTTTACCCAAATGCAACTTTATTTCAAAAGGCCT TACTTACAAGCTTATTTAAGAAGCTAATTGAAATAATAAGAACTTATATGTTGGTATAAGTGTTGAGAACGTGAAGGTTA TCGAGATAAGCTTAAGAGTTTACAGGTTGGTTATAAACTAATTTTCATAAGCTAAATCAAACACTTGCTTGACTGCTTAT GCTATAAGATAAACTAAGATATCATATAGTTCATTAATGGAATGCTTGAAGAGAATAAAATGATGGGTTAAAATGAAACT TAATGTTCTAATCTCTAGTTCTTTTTTATCTACATTACACAGTTCTCTTAATTCAAAAATTAAAATTTATCTTTGCTTAT CCCCTTTTCATCCAATACCTTCAAAGTTCAAACGTAGACTAATTGTTTAATATGGTTTGCCATTGTGTATTTCAGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGGTATATTTGTTTTGATATGTATAGTGTGTGTACTGATGTTAAGTTCATATTTGACTTTT CCACTTCTAAAGCAGCATTCACTAATGTGTATAGACTTTCTGGCCCTTATTTATGTTGTGGTTTGAGTTGCAAGCAGAAA AATTAAGAGGCTGATGAAATAAAAGTGTCAAAATGACTCATTTGATAATGTTAGTATGTTCTGAAAAAACTGTGTTCCTT TTGCTTTCAGTATCTAGGCAAAGTCTTAGGTGCCCAAGTTTTAATTCGTTTTTTATTTTGTATGCATGATAGTAATTTAC TTTCATGTACACGTGGGCATGCAATTTTATTGAGTTCTGCCTTGAAAATGATTTTATTGTGGAAAATGTCCTCTATATTT GACAATGATTTTGATGTGGGAAAGGTCTTCTATATTGTTATAATTATAATTAAGTCCATAGGTGAATATTTTCTTTGCAA CATATGTTAACTTTTGAATTCTTCACCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCT GGTTTCAAATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTC AGCGTGGAGAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGTACAATTTGTG GTCTCATGGCGGGGATATGTTCATAGAACAATAACTAGTTTTAGTTGATATTTGTATTGCATTATCCTGAGCAAGTCAAG AAGCCTGAGTCCCACTTTATGTAGCTGTAGTATATATGAATTATTCATGAAAATTTCTTTTGCCATAGTCAAATGTGATT AGTTTCATAAGTTCGTAGGTATTAACCATTTTGGCAACACTTAACTACTTTCATTTTCAAAAGTAGGTTTCTTGGCTGTG CCTTTACATTTGACAGAAATGTTTTTGAAGTTTGAAGGACCCAGAGGTATTGGGTACATATCAATTCACATTGCGTGTTC CAGTCTTTTGGATGAAAAAAGACAAGCCAAGCTTTCTGATATATACTCGTAGTTTGTTAGTTATGTTGACGTAGTTAGTT AGAGGGTTTGAGAGGGAATATTTTTAATAAGAGGCAGTTAGAGAGTATGGTAATCTTTTGGGGTGATTGTGGGAATTCTA GGGAGAGTGCTGGTTCTCTTGAACAACCAGTGACCATTGTAGTTCATTGCTATTCTTGAATAATAGTCGGTTCTTGTCCC TCATCTATCAATTGGTATCAGAGCACCATCCCAGGGTTGTTATTGCCCGGTCTTTTGATTGTTTAAGCATTTGCAATTAT TACCTTTTCTTTTGGTGTCCATAATTATTACGTAGACTATTTTTTTATCATGTCAGATTTTTCAAAGTTAGTTGGTTGAT GGTTTTTAGTCATCCAGAAAACTGCACACGCATTTTGATTAGTAATTCTCTATTCAATTTTGTTATTCTAGAAGCAACCT GTCTTAATTCTTTTTTTTCTTTCTGAAGCTGAAAACAGATAACTGGTATTCATATATTTTTAAATTCTGTCTGTCCTTTC CCTCACCCACACAATAAATTCATCCACTTAATGCATGTTAATGTTGAAACATGTCTGCCACATTTTTATTATTTTCTTCA CGGTAATTTATTATTATGCTCCAGCATTTTCCTAATTCATAAAAGTCAAGGTTCCCAACAGCTTTGGTGTCAGTCCTCTT TGTGCTTTTTGTATTTATGTCCAAGTCCAATCATAATGTAGTTTATCCACTTCACATTGTAGGGTGTAGGAAACAATGAT CAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGTAAGAAGAAAATAGTTCTGTTTGTTTGT TAATGTGTGATTCTGTTTTGATGAATGAACTTGTAATTGCAGGCAATAAGGCGGCGCTTTGATAAGCGTATATACATTCC ACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGCAAGGTCACGAGTCGTGATTATGTGTATTGAAGGATAGCACG TATTGGGTTATAATCTAGCAAATGATCTTACCATGTTTTTCTTGTGGGCTTGCTAAATTGAACAGGTGCATTTAGGAGAT ACTCCCCATAACTTGGCTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGT CTGTGTAAGTTTGACTTCTATATGAAATGCTTTATTGCAGTTCTCATGTTATATGGATGAGTTTGATGCTGAAGTTATTT GTACATCTTCTATAGGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCC TGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTC TTGCTTCTCAGGTATTTAAGATGCTGTAGATTTTCATTACAGTGGAAAGTAGGACTTCTCAAAATGATAACTGGTATCTG AGAGTTTATATGTTATTGTTTTCTATCCAGATCCTTCCGCCACCTATATCAAGAACCGATTTTGACAAAGTACTTGCCAG ACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA
CDS sequence (LotjaGi3g1v0478700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAG CAACAAATACACCTTATGCTCTCGATCAGGCAATAAGGCGGCGCTTTGATAAGCGTATATACATTCCACTGCCAGATGTG AAGGCTCGCCAACACATGTTCAAGGTGCATTTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACACTTGGC TCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCC AAGATGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGGGTGCAATACAAATA ACAATGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGATCCTTCCGCCACCTATATCAAGAACCGATTTTGACAAAGT ACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCACAAAGGAGTTTGGAGAGGAAG GTTAA
Protein sequence (LotjaGi3g1v0478700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQRFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGK RRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDV KARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQI TMQDLATKGLASQILPPPISRTDFDKVLARQRPTVSKSDLEVHERFTKEFGEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 200 | 200 | 5.8E-227 | – | |
| PANTHER | 1 | 200 | 200 | 5.8E-227 | – | |
| SUPERFAMILY | 2 | 81 | 80 | 1.28E-24 | ||
| SMART | 2 | 79 | 78 | 3.2E-24 | ||
| CDD | 4 | 77 | 74 | 6.58549E-37 | – | |
| Gene3D | 6 | 75 | 70 | 1.8E-24 | – | |
| Pfam | 7 | 70 | 64 | 1.2E-20 | ||
| MobiDBLite | 73 | 110 | 38 | - | – | |
| MobiDBLite | 91 | 110 | 20 | - | – | |
| SUPERFAMILY | 126 | 370 | 245 | 4.71E-38 | ||
| Gene3D | 126 | 200 | 75 | 1.1E-35 | – | |
| CDD | 134 | 200 | 67 | 3.82912E-9 | – | |
| Pfam | 168 | 201 | 34 | 5.5E-9 | ||
| PANTHER | 201 | 373 | 173 | 5.8E-227 | – | |
| PANTHER | 201 | 373 | 173 | 5.8E-227 | – | |
| Gene3D | 201 | 362 | 162 | 4.5E-47 | – | |
| Pfam | 204 | 237 | 34 | 7.4E-5 | ||
| ProSitePatterns | 209 | 228 | 20 | - | ||
| Gene3D | 238 | 353 | 116 | 4.5E-47 | – | |
| Pfam | 261 | 294 | 34 | 2.3E-6 | ||
| Pfam | 307 | 371 | 65 | 3.5E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0478700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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