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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007330
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.947s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0079279.1
n.a. Vacuolar sorting protein 4b [Medicago truncatula] gi|357449307|ref|XP_003594930.1| chr0 30656284 30663631 +
5 domain predictions
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Lj1g3v2583420.2
n.a. PREDICTED: spastin-like [Glycine max] gi|356568294|ref|XP_003552348.1| chr1 29837995 29843702 +
2 domain predictions
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Lj3g3v1149140.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 4-like [Cucumis sativus] gi|449463076|ref|XP_004149260.1| chr3 15623128 15628196 -
5 domain predictions
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Lj3g3v2995710.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 4B-like [Cicer arietinum] gi|502145742|ref|XP_004506158.1| chr3 37203040 37207616 +
5 domain predictions
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LotjaGi1g1v0464200.1
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G45500.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q6AZT2|SPAST_XENLA Spastin; TrEMBL-Plants: tr|V7B672|V7B672_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0464200 LjG1.1_chr1 97044037 97050095 -
2 domain predictions
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LotjaGi1g1v0464200.2
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G45500.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q6AZT2|SPAST_XENLA Spastin; TrEMBL-Plants: tr|V7B672|V7B672_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0464200 LjG1.1_chr1 97044323 97049963 -
2 domain predictions
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LotjaGi3g1v0175600.1
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|I1LTU5|I1LTU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175600 LjG1.1_chr3 24413446 24419040 -
3 domain predictions
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LotjaGi3g1v0175600.2
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A0L9UMH3|A0A0L9UMH3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175600 LjG1.1_chr3 24413948 24418557 -
3 domain predictions
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LotjaGi3g1v0175700.1
n.a. Vacuolar sorting-associated-like protein; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|G7IG52|G7IG52_MEDTR MIT domain protein; Found in the gene: LotjaGi3g1v0175700 LjG1.1_chr3 24423014 24431406 -
3 domain predictions
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LotjaGi3g1v0478700.1
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|T2HVY3|T2HVY3_CUCSA Vacuolar protein sorting-associated protein 4-like; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483159 89487848 +
3 domain predictions
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LotjaGi3g1v0478700.2
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A1J7HFS6|A0A1J7HFS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483187 89488026 +
3 domain predictions
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LotjaGi3g1v0478700.3
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A1J7HFS6|A0A1J7HFS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483187 89488026 +
3 domain predictions
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LotjaGi3g1v0478700.4
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|T2HVY3|T2HVY3_CUCSA Vacuolar protein sorting-associated protein 4-like; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483451 89485574 +
3 domain predictions
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LotjaGi3g1v0478700.5
n.a. Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|T2HVY3|T2HVY3_CUCSA Vacuolar protein sorting-associated protein 4-like; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483451 89487526 +
3 domain predictions
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LotjaGi3g1v0478700.6
n.a. ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A0L9V6L2|A0A0L9V6L2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0478700 LjG1.1_chr3 89483451 89487526 +
3 domain predictions
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