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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0008600 |
| Transcript ID | LotjaGi4g1v0008600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1179314..1182992) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAGAGAGGGTTAGATAGAGTACCAATATCATTTTTCAACCATTCTTTTATTGAATTGACGGTGATAAAGGTTAAAA GTAATGGGCAATTGTGTAATTCCACTTTGCTTCCATTTTACCCCAACAATCAAACCTGTGTGCCTGCGAAATTCTAAAAA GGAAACGGTTTCCATTGGGTGCTCCACTTTATCCACTCTCTTCTCTTTGCAACATTGAAAAACAAGGTCCCTCCCTTCCT ACTGCAACTCCTCCCCTTTTTACTTTTCTACCCTCCAACCACTCCACTCTTATCCATACCCCACACAATTACCCTTCTAC TCCATCTATCTACCCCTTGCAAGTAACAACCTCATAGTAAATCAAGGGCATTTTCGTGATTTCATCACCATAAAGGTAAA CATATAGACACAGACAACAAGAGAGAGAAAGAAAGACATTGACAGAACAGAAGAACAAGAGTTAAGATAGTTATAGATAT AGAGAGAGATAGAGAGAGCGGTTTTTTCAGTTGCTATAAAACAACAATGGTGTCTGATCAGGACATAGCAAAAGGGGTGG AGTTTCTACTCCGTCACTCTGACCCCAACTCCATAACAACAGTAAACGGTGTCGTTCAGCAGTTGGAGGCTCAACTAGGG TTCGACCTTTCCCACAAAGCTGGTTTCATCAGAGACCAGATCGACCTTCTTCTCCGCTCACAACCACCGCCATTTCTTCC TCCTCCGCCACACAAAGACCATTTTCCCCTTAACCAACAACAACAACAGCAACCCTACTTCCCAACCACCCAATCTCACC ACCACTTTCCTCCCCATTTTGCCCTTCACTCCCATCATGAGATCAACTTCCAGCAGCAGCACCACCACCCTCCTCCGCCA CCGGCGAGTAAAGGCCACGTTGATGCACCCAAACAAAGGTGAGATTTATTTTCATGTTCCATTTTTGGAAACTGTTGATT CTTGTGTTTGTTTTGTTGTTTTATTTATTGAATTGGATTTGAAATTTTGTAGCTTTATTACTACCCACTTGTTAATGTCA TGTCATTTTCGGTTTGATTATTTTTATCACGTTTCAACACATTTTTGTTTATTGGAATCCCCCAAAAATAGAAATTCTCT ACCTTTTCAAACTATTCTCTTTTTGTTTGCTAGCATTCTCCTACTGCTATTGTCTTTTTTTTTTTGAAGTTCTACTGCTA TTGTCGGATACTAGTTATTAATAATACTTATTTATTGACTAGGAATGTTTTGGTTGAGAATTTTTGTCTAGTGTTATTTG TCATTTTTCACAATTTTAAAATGTGTTGTTTTAATTTGCCTAGTAGTCACACCTAAAATATGATTCAATTTCTGTGCCAT GGTGTCCTGTTCTAATTAAGCTTTGAGTATGAGAGATTTTATGTAATTTGTCTCTAATGAGAATGGTGTTGTCTATGTTA TGGAATTAACTTATGAAATGTTGTGTTTGTACTCTTTAAATGATTTACCAGTGTTGCTACTGGAGGCAAAAGAAGAGGCG GTGCAGGTGGTTTAAACAAAGTGTGTGGTGTTTCTCCTGAACTTCAGCCAATTGTTGGCGAGTCCGAGCTGCCAAGAACT GAGGTAGTTTTTTTTTTTCTCCTCATTCAACTAGGTTATCTGCCTTGCTATCATTGTTGAAGTATGAATTTTCGTTTTAT CTGGAATGAACTGATAATTTTGAAAATGTCAATTCAGATTGTGAGACAGCTTTGGGCATACATAAGGAAAAACAACCTCC AAGATCCTGGTAACAAAAGAAAGATAATCTGTGATGATGCTCTGCGTGTGGTGTTTGAGACAGACTGCACTGACATGTTC AAGATGAATAAGTTACTAGCTAAACACATTATCCCACTTGGGCCTACAAGTAAGTCTGTGTTTGGATCAATGTTGTCACA GTTGATTTAGGATAATATTGATTTTGACGAAATTGATTATGGTAAAAGTGAGCTGAAAGCAACTGATTTTATGTTTGGCA ACATTTATGAAAAGTGATTTTTGTTGAGTAATGTTGAGAAATCTAGTTTTAAAATTCACAGAATTGATTAAGTTCAATGC TGAAGTCACTTTCTCTAGCTTTTAGCAGATTTGATTTTGGCTCTGCTATTAATTATTGAAAATTACTCCCAGACATTTAT ATTGTCATCTAAAATTGATTTTACTCTATCAGAATTGGTTCTGAGGTCAAATAATAAAGGAGACTGTGTTACTTTATTTA TTAGCATAGGTTTTTTTGATTTATTTGATTAATTATTTACTTAATAATCGACCACTGTTGTCACCACAGAGGCGCCACAA GCTAAACAAATGAAGGTGGAGGCTGAATCTGCACTTGAAATGGCTGGACCTGCTTCACAAGCTAAACGAATGGTGGAAGC TGAATCTGCACTTGAAATGGCTGAACCTGCGCCACAAGCTAAACGAACGAAGGTGGAAGCTGAATGTGCTCTTGAAATGG CTGAACCTGCACAACAAGCTAAAGGAACGAAGGTGGAAGCTGAGTATGCACTTGAAATGGCTGAACCTGCTTCGTCTACT GTGACAATATCAGAAGCACTTGCCAAATTTTTGGGCACTGGGGAAAGGGAAATGCTACAATCTGAAGCCACAAGACTTGT TTGGGAGTACATCAAGCTCAATCATTTGGAGGTGTGTAGTCTTGTCCACAGCTTCTATATTATGATACTTATAAAATTGT CTTTTACTTGTAAATAACATCTCTTTGAGGTAAGCTGACAAAAAACGATTTAATAAGAAGGTAGATTGTTTCTGCTTCTC ATGTAGCAAGTTCTTTTCATTGAGCTTTTCATGGCTTCCATAATTGTTCTTTTGATGATCTACAATTGCTCTGTGATATT TGTAGGATCCTTTAAATGCAATGGTGATAGTATGTGATGCAAAGCTTCAGGAGCTACTTGGATGTGAAAGCATTTCAGTT TTAGGAATACCAGAGATGCTAGCACGTCATCATCTATTTAAAGTTTAAACAGTCCAACACCTGTTAATGCTGATCAATTA GTGTCATATAAGGTCAATCTTTTCCCTCATTACATTTACCAATTGTCTAATGGTTTTTGTTTTTAATTTTTCTTGCTTCT TTAATGTGTATGTTTGATAATGTGTTACCCAATTATACATGATATGTCTCCCTGCCTCACTTTCCCTCATAGACTCAAAG TGAATGTTACCGTCTGTTTACATTAGTGTCAACCGATATCCAAACATAATGTTTCATGTTTTCTACACATGGAATTTGGC TAACAAACTTTTTTTTTTCTATGAATTATGATGCAGGGTATGGTCCACATGAAGCGATAATTATCTGTTTCTTTGTGTTG CTGATCGTATAGGAACTTCTTACTTATTCCTGTAACTTTCACTGTTTTTTAATCTCTTTATTCATTGACATATTTAAACC ATATATATATTGTCTAACAGTGTTAGGTTCATTGCTTAGAATGACAATACACCTTAAGCTAGGCAAGAAGTATGTTGTAT TTATAATATGACCAGAGAGTTAGGTTGTTCTGCATGTCTCAATGTGTAATCTCAACTGACAAAAGGAAATTGAACTCACA TTACTGGTACTCGTGTACATTGAGATGCTCCAATTTGAATGCAACCTTGTTGATTTGTATAAAAAAATCTCTTATATTT
CDS sequence (LotjaGi4g1v0008600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTGATCAGGACATAGCAAAAGGGGTGGAGTTTCTACTCCGTCACTCTGACCCCAACTCCATAACAACAGTAAA CGGTGTCGTTCAGCAGTTGGAGGCTCAACTAGGGTTCGACCTTTCCCACAAAGCTGGTTTCATCAGAGACCAGATCGACC TTCTTCTCCGCTCACAACCACCGCCATTTCTTCCTCCTCCGCCACACAAAGACCATTTTCCCCTTAACCAACAACAACAA CAGCAACCCTACTTCCCAACCACCCAATCTCACCACCACTTTCCTCCCCATTTTGCCCTTCACTCCCATCATGAGATCAA CTTCCAGCAGCAGCACCACCACCCTCCTCCGCCACCGGCGAGTAAAGGCCACGTTGATGCACCCAAACAAAGTGTTGCTA CTGGAGGCAAAAGAAGAGGCGGTGCAGGTGGTTTAAACAAAGTGTGTGGTGTTTCTCCTGAACTTCAGCCAATTGTTGGC GAGTCCGAGCTGCCAAGAACTGAGATTGTGAGACAGCTTTGGGCATACATAAGGAAAAACAACCTCCAAGATCCTGGTAA CAAAAGAAAGATAATCTGTGATGATGCTCTGCGTGTGGTGTTTGAGACAGACTGCACTGACATGTTCAAGATGAATAAGT TACTAGCTAAACACATTATCCCACTTGGGCCTACAAAGGCGCCACAAGCTAAACAAATGAAGGTGGAGGCTGAATCTGCA CTTGAAATGGCTGGACCTGCTTCACAAGCTAAACGAATGGTGGAAGCTGAATCTGCACTTGAAATGGCTGAACCTGCGCC ACAAGCTAAACGAACGAAGGTGGAAGCTGAATGTGCTCTTGAAATGGCTGAACCTGCACAACAAGCTAAAGGAACGAAGG TGGAAGCTGAGTATGCACTTGAAATGGCTGAACCTGCTTCGTCTACTGTGACAATATCAGAAGCACTTGCCAAATTTTTG GGCACTGGGGAAAGGGAAATGCTACAATCTGAAGCCACAAGACTTGTTTGGGAGTACATCAAGCTCAATCATTTGGAGGA TCCTTTAAATGCAATGGTGATAGTATGTGATGCAAAGCTTCAGGAGCTACTTGGATGTGAAAGCATTTCAGTTTTAGGAA TACCAGAGATGCTAGCACGTCATCATCTATTTAAAGTTTAA
Protein sequence (LotjaGi4g1v0008600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSDQDIAKGVEFLLRHSDPNSITTVNGVVQQLEAQLGFDLSHKAGFIRDQIDLLLRSQPPPFLPPPPHKDHFPLNQQQQ QQPYFPTTQSHHHFPPHFALHSHHEINFQQQHHHPPPPPASKGHVDAPKQSVATGGKRRGGAGGLNKVCGVSPELQPIVG ESELPRTEIVRQLWAYIRKNNLQDPGNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPLGPTKAPQAKQMKVEAESA LEMAGPASQAKRMVEAESALEMAEPAPQAKRTKVEAECALEMAEPAQQAKGTKVEAEYALEMAEPASSTVTISEALAKFL GTGEREMLQSEATRLVWEYIKLNHLEDPLNAMVIVCDAKLQELLGCESISVLGIPEMLARHHLFKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 249 | 249 | 9.5E-136 | – | |
| PANTHER | 1 | 249 | 249 | 9.5E-136 | – | |
| Pfam | 2 | 56 | 55 | 2.9E-13 | ||
| SUPERFAMILY | 3 | 57 | 55 | 1.96E-5 | – | |
| MobiDBLite | 107 | 148 | 42 | - | – | |
| SUPERFAMILY | 140 | 222 | 83 | 2.62E-28 | ||
| Gene3D | 140 | 229 | 90 | 6.2E-29 | ||
| SMART | 145 | 224 | 80 | 5.0E-45 | ||
| CDD | 149 | 219 | 71 | 3.36523E-38 | – | |
| Pfam | 149 | 219 | 71 | 6.8E-27 | ||
| PANTHER | 280 | 382 | 103 | 9.5E-136 | – | |
| PANTHER | 280 | 382 | 103 | 9.5E-136 | – | |
| Gene3D | 302 | 386 | 85 | 1.1E-19 | ||
| SMART | 306 | 385 | 80 | 1.6E-14 | ||
| SUPERFAMILY | 309 | 382 | 74 | 2.29E-17 | ||
| CDD | 310 | 381 | 72 | 4.30763E-20 | – | |
| Pfam | 310 | 381 | 72 | 2.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0008600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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