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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0022400 |
| Transcript ID | LotjaGi4g1v0022400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-40 repeat protein; TAIR: AT5G58230.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O22466|MSI1_SOLLC WD-40 repeat-containing protein MSI1; TrEMBL-Plants: tr|Q1I184|Q1I184_PEA WD-40 repeat protein; Found in the gene: LotjaGi4g1v0022400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2729813..2733903) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAAAGAGGACGAAGAGATGCGAGGCGAGATCGAAGAGAGGCTAATCAACGAAGAGTACAAGATTTGGAAGAAGAA CAGTCCCTTCCTCTACGACCTCGTCATCACCCACGCTCTCGAATGGCCTTCCCTCACCGTCGAATGGCTCCCGGACCGCC ACGAACCACCGGGGAAAGATTACTCTCTGCAGAAGGTCATCCTCGGAACCCACACCTCCGAGAACGAACCCAACTACCTC ATGCTCGCACAGGTCCAGCTTCCTCTCCATGACTCCGAGAACGACGCGCGTCACTACGACGACGACCTCGGCGGCTTCGG TTGCGCCAACGGGAAGGTGCAGATCATTCAGCAGATCAACCATGATGGAGAAGTTAATCGGGCCAGATATATGCCGCAGA ATCCTTTTATTATCGCCACCAAGACGATTAGTGCTGAGGTTTATGTGTTTGATTACAGTAAGCATCCGTCGAAGCCGCCG CTTGATGGGTCTTGCAACCCTGATCTTAGGTTGAGAGGGCATAATACTGAAGGGTATGGGTTGTCGTGGAGTAAGTTTAA GGAAGGGCATTTGCTTAGTGGGTCTGATGATGCTCAGATTTGCTTGTGGGATATTAATGGGGGTACTCCGAAGAATAAAT CGCTCGACGCGATGCAGATTTTTAAGGTTTGATAATGTGATTAATTGATGAATAGCAATGTGATTTGTTGAATTAAGGGA CTAACTCTATGTGGTGTGTGTTTGTTTATTAGGTACATGAAGGGGTGGTGGAGGATGTGGCTTGGCATTTGAGGCACGAG TACTTGTTTGGTTCTGTTGGGGATGATCAGTACATGCTTATATGGGATCTTCGAACACCCTCTGTCAGCAAGCCTGTGCA ATCTGTTGTTGCTCATTCAAGCGAGGTGTGTGTCGTGATAATTTTGATAACTCTGTCTGTGTGTCTCTATTGAGTGTGTT TGTGGACTAATATGTTTGTTTAAACAAGTTGTTAAATCTCGTCATCGCTTGTTATGTGATATGTACTGTTATATGCTGAA ATGATGTGAACCTGTCGTCCCCCCAATAGCACTACTGGATTTGCCTCCCTTGGAAATTATTACACTGTTTTCTCTGACTA GACATTGTTGATTTTGCATAGTATATGTTAAATTTTTGCCCCTTAACTATTTTTTCTTGTACATATGGTGGTTAAGGGAA CCTAGTCTCTGTTTAAAGGGTTTGTTAGAGCACATGATTGATGTGAGTTTTTTATGCATTCACTGAATTGTCAGAAAATG AATTTAATTGGGACAAATGTTAGAATTGAAATTTCTACTTGTGATATATACTACTATTTTGTATCGAAAACTGAATCAAT ATGAGGAAATGGGCTGGATTAGAAAGACTTTACCTTCTCTGTAAAGGAAAACTAGTTGCTGTTTGAAGAGTGTGGGTACT TGGTGTTTTGAAGTGATTTCTCTTATTTATGAGAAAATGAATCCAAGAATAACAACTGTTAGAATTATAATGCTATTGCA TCTTGAAATTGGCAAGACATTTTATGGAAATGAATTTGAGAAATCTTTGTCAACATGAGCACAGCAGGCCTGTGGAGGAA TAATTTGTTCACACGGGAAAATAACTGCTTGATCTGCTTTGTCATGTGAACTTGTTTGATACTGATGAACTTAGGAGAGG GAATTGGAAATTTTAATTGATATTTGGTGATATCTTCTGAAAAGAGCATTTTTCATTATATTTTTGAAATCTAGAAATTT CTAAGAAAGTTTGGCGCAACTCATCAATCCCTAGTCTTATTGAATCTAAAGGGAGTCAGTGGTGTGGTTGAACATTCTAT TGAAAGACTTAATCTCGGGTGATGATAGAAAAGCCAATATGGAAAATGAATAAATTTCTTACCATGGCTATGATTCAGGA ACTGGCCATAACTGCTCTCTACGGTTTTACATTTGCACTATTGCTCTTCTACTGTTGCACATTGTTACTCAAATTGTCAA TCTGCTAGATCCTTTTAATGTTCTGTTCCACTGTGCTATAGTTACCTCTATCTTTTAACTCTTTTGAGTTCACTATCTTT TGGGTTTCTATTACATAGTTATCGATTGCGCGCGATAGCGGCGCTATAGCGCCGTCGTGTAGCGTAGCAGACCCCTGCCG CGACGGGATCGCGGCTGCGAAATCCCGCCATTCGCGGCCAATAGAGGCCTTCCCTTGTATGGAATTTCATTTTGGGGGTC ATCTGCGACAGGCCGCGATCCGCGATTGACTACTATGTTTCTATAGTTTTCGAAATGCTTCTACTGTTCTCAATCCCACC TACTGATAAAGATTTTTTACATTGGGTCTTGTTAGGTTAACTGCTTGGCTTTCAATCCCTTTAATGAATGGGTTGTTGCT ACTGGTTCTACTGATAAAACTGTGAAGTTATTTGATCTGCGCAAGATCAGTTGTGCTCTTCACTCCTTTGATAGTCACAA GTAAGAATCTCCTTAGATGTTTCTTGAATTATTTCAGATGTAATTATATTTAGCAGTTATTGACCTAGATTGTTGTTCTT GGGTTCAACAGGGAGGAGGTTTTCCAGGTTGGCTGGAATCCAAAGAATGAGACTATTTTGGCTTCTTGTTGTCTTGGTAG GAGACTCATGGTGTGGGATCTTAGCAGGTATTACTTAATGAAAGCATTGTCATCTCTGGACTTGCTTGTGGATTTTGTTA CTATTTATTATTCTCAAATGTTCAGACTTCAGAGTTATGGTACACTAGTGGAATTTTTAGATATGTTGATAAGTTAAAAT TTCAGCAAGAGGTTTTAAGTGGCCTGTACTAGTGCACACTTTAAAGGGGGATTGTATAAATATTAGAATCCATTACTTTG TGTTCTCTAATTGTTTTGACTTTCAGGACGTTTAAATCCTTGACAAGAATGCTGATTTTCAGTTCAAATCAAATTGCAGT TTAGTAGTAGGTCCATGTTTGTTTAGAAGAAAAGCTTGCTTAGAATTGAAAGTTGCTGCCACATGTTGTGTTTGTTAATA ACTTCGTTTGTTAAATTTTTGAATCCCTAGAGTGATTTGGGGTCAACATGCAACTTGGGTCAATCAGAACTCTTTATTTT GAGCTAATTGAGTGGACGTGGATTATAATTTCTGTTTTTTTATTGGGTTCAGTATATATAAATGACTAAATGAGACTGAT AGAATTATTGAGGAACTGTTATCATGTGAACATAGATACCAAGTCAATTACATGTCCTTGGCATAGTTATCGATAGCGCG CGATAGCGGCACTATAGCGTCGTCGCGCGATAGAGATCCCGTCGCGGCCGCGAAATCCCGCTATTCGCGGCCAATAGCGG CCTTCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCCGCGATCTGCGAATGACTACTATGGTCCTTGGA CTTCTTTTTAGTACTAACTTTGTAGTAGACACCACCTCAGCTAGATGGGTTCTGGTATTTGTAGCTTGTGGCTCGAGTGG TGCAGAATGTAAAATGTCTAGTGAAGGGTTGATTTTCTAACGAAAATGAATTAATAAGAAAGACTCAATAATCAATTCAT ATTATAATAAATCATAGATATCCCAGATATCTGCCTTAGTTACAAAGTTCACTACTCATCTGTTATGCAGGATTGATGAG GAGCAGACGCCAGAAGATGCAGAAGATGGTCCACCAGAGTTGCTCTTTATTCATGGTGGTCATACAAGTAAAATATCTGA TTTCTCTTGGAATCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAG AGAATATATATCATGACGAAGATGATCTGCCAGAAGAGTCAGCGAAGGCCTCCTGATGTAATTGCTCATCATGATAGTCA GTGTAGTTTGGAATATAGGGGTTGAGTGCTTGGGAGTTGGGTATTTTTTATTTGTATTTGTGCTCCTTTTTATACATGGT TGTAGCTGTGTTTTTACATGGCATGACCTATGATCGCCTTGACTTGTAGCATGCCTGAGCAACCTGAGACGGGATTAACT TTTGATTGTAA
CDS sequence (LotjaGi4g1v0022400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAGAGGACGAAGAGATGCGAGGCGAGATCGAAGAGAGGCTAATCAACGAAGAGTACAAGATTTGGAAGAAGAA CAGTCCCTTCCTCTACGACCTCGTCATCACCCACGCTCTCGAATGGCCTTCCCTCACCGTCGAATGGCTCCCGGACCGCC ACGAACCACCGGGGAAAGATTACTCTCTGCAGAAGGTCATCCTCGGAACCCACACCTCCGAGAACGAACCCAACTACCTC ATGCTCGCACAGGTCCAGCTTCCTCTCCATGACTCCGAGAACGACGCGCGTCACTACGACGACGACCTCGGCGGCTTCGG TTGCGCCAACGGGAAGGTGCAGATCATTCAGCAGATCAACCATGATGGAGAAGTTAATCGGGCCAGATATATGCCGCAGA ATCCTTTTATTATCGCCACCAAGACGATTAGTGCTGAGGTTTATGTGTTTGATTACAGTAAGCATCCGTCGAAGCCGCCG CTTGATGGGTCTTGCAACCCTGATCTTAGGTTGAGAGGGCATAATACTGAAGGGTATGGGTTGTCGTGGAGTAAGTTTAA GGAAGGGCATTTGCTTAGTGGGTCTGATGATGCTCAGATTTGCTTGTGGGATATTAATGGGGGTACTCCGAAGAATAAAT CGCTCGACGCGATGCAGATTTTTAAGGTACATGAAGGGGTGGTGGAGGATGTGGCTTGGCATTTGAGGCACGAGTACTTG TTTGGTTCTGTTGGGGATGATCAGTACATGCTTATATGGGATCTTCGAACACCCTCTGTCAGCAAGCCTGTGCAATCTGT TGTTGCTCATTCAAGCGAGGTTAACTGCTTGGCTTTCAATCCCTTTAATGAATGGGTTGTTGCTACTGGTTCTACTGATA AAACTGTGAAGTTATTTGATCTGCGCAAGATCAGTTGTGCTCTTCACTCCTTTGATAGTCACAAGGAGGAGGTTTTCCAG GTTGGCTGGAATCCAAAGAATGAGACTATTTTGGCTTCTTGTTGTCTTGGTAGGAGACTCATGGTGTGGGATCTTAGCAG GATTGATGAGGAGCAGACGCCAGAAGATGCAGAAGATGGTCCACCAGAGTTGCTCTTTATTCATGGTGGTCATACAAGTA AAATATCTGATTTCTCTTGGAATCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGG CAGATGGCAGAGAATATATATCATGACGAAGATGATCTGCCAGAAGAGTCAGCGAAGCTGTGTTTTTACATGGCATGA
Protein sequence (LotjaGi4g1v0022400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEDEEMRGEIEERLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKDYSLQKVILGTHTSENEPNYL MLAQVQLPLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTISAEVYVFDYSKHPSKPP LDGSCNPDLRLRGHNTEGYGLSWSKFKEGHLLSGSDDAQICLWDINGGTPKNKSLDAMQIFKVHEGVVEDVAWHLRHEYL FGSVGDDQYMLIWDLRTPSVSKPVQSVVAHSSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISCALHSFDSHKEEVFQ VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIW QMAENIYHDEDDLPEESAKLCFYMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 419 | 418 | 6.1E-152 | ||
| PANTHER | 9 | 416 | 408 | 6.2E-194 | – | |
| Pfam | 19 | 88 | 70 | 3.3E-27 | ||
| SUPERFAMILY | 108 | 406 | 299 | 4.43E-52 | ||
| SMART | 112 | 151 | 40 | 13.0 | ||
| SMART | 164 | 204 | 41 | 0.0017 | ||
| ProSiteProfiles | 171 | 213 | 43 | 10.241 | ||
| ProSiteProfiles | 171 | 410 | 240 | 28.001 | ||
| PRINTS | 191 | 205 | 15 | 6.2E-6 | ||
| ProSitePatterns | 191 | 205 | 15 | - | ||
| SMART | 214 | 254 | 41 | 0.081 | ||
| SMART | 260 | 300 | 41 | 2.0E-8 | ||
| Pfam | 262 | 300 | 39 | 1.4E-7 | ||
| ProSiteProfiles | 267 | 302 | 36 | 10.508 | ||
| PRINTS | 287 | 301 | 15 | 6.2E-6 | ||
| SMART | 304 | 344 | 41 | 8.9E-4 | ||
| ProSiteProfiles | 311 | 353 | 43 | 9.372 | ||
| SMART | 361 | 401 | 41 | 0.0014 | ||
| Pfam | 365 | 400 | 36 | 0.0015 | ||
| ProSiteProfiles | 368 | 402 | 35 | 9.005 | ||
| PRINTS | 388 | 402 | 15 | 6.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0022400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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