Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042000 |
| Transcript ID | LotjaGi4g1v0042000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor GTE4; TAIR: AT1G73150.1 global transcription factor group E3; Swiss-Prot: sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic; TrEMBL-Plants: tr|A0A0L9VGU3|A0A0L9VGU3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0042000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4958736..4961913) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCATCGCCTTTAAGAAGAGGCTCACGCACTCTCTTGTTCCTCGCTCAGATTAGGGTAACCGAAACCTCCAAACCCTA CACGCTCTTTTTCTCTCTCTAAATCGCCGTTTCTCTCTCTAGATCCAGAATCGCCGCTCCTCCTCCGGCGGCGCGTGAGA ATCTCCATCGGCGCGTCAAACTGTGTGTTCTCACATCTTATGTTCTGTGCGACCCGCATTGGTGATTTCGCGCCAGAGGT TCGTCGGAGTCCCGCCGTGATTTGGCGCTCACATGGCGTCGGCGGTCTTAGCCAACCGTAACGAACCGAACTGGCCGCAG CAGCACAGAGGCGGTGCAACAGCAACAGGATTCATGGCGAAAACACCCTACCCTAATTCAAACCCTAACCCTAACCCTAA CCCTAAATTTCTCAACAACAAGAGGACTCAATCACCTTCCGATGACGCTTCCTCCATCAATCGCCGATCAAACGATGCCG TCTCCAACGGCTATTCCAACTACGCCACCTTCAACATCGCCTCGTACAGCAAGAAGGAGCTCAGCGAGCTCAAGGCGCGT CTTCAATCGGAGCTCGAAATCGTTCGCCAGGTCAAGCTCCGATTCGAGGCCGTCGAGTTTCAGCCCCGGCCGATGAACCA CAACCACAAGAAGCCCGTGAGCAAGAAGGTTGCCGGCACCAAGCGGCCGTTTCCGGCGAAGGATTTGAAGCGGTCGCAGT CGGAGGTTGGGAACATGATGAAGGGTTGTGGCCAGGTTCTGCAGAAGCTGATGAAGCATAAATTCGGGTGGATCTTCAAC GTTCCTGTTGATGTTGTGAGTTTGGGGCTTCATGATTACTATGATATAGTGAAGAAACCCATGGATCTGGGTACTGTGAA ATCGAATCTGGCCAAGAATGTGTATGCTACACCGTCAGATTTTGCGTCCGATGTGCGGTTGACTTTCAACAATGCATTGG CCTACAACCCTAAGGGTCACGATGTTTACGCCATTGCAGAGCAGCTTCTGGTGAGGTTTGAGGAGCTGTATAGGCCGTTG CATGAGAAATTCGAAGAGCCTGTTTTCGATGAGGAATTACAGGCTAGCTCTTGGAACCATGTTGAGCCAGAGAGGGTCAT CAAGAAGAAGGAAAACCCAACCCCTCTTCCTCCGTCTGCGAAATCGCCAGAGCCATTACCTGTCCCTGAAAGGACCTCAA ACCCTCCATTGCTGCAGTCGCCTGTGCGCTCATCATCGCCAATGCAACCTTTGCCGCAGCCTACGAGGATGAGGCCCGCT TCGAAGCATCCGAAACCGAAGGCGAGGGACCCTAACAAGAGGGAAATGAACATGGAGGAAAAGCAAAGGTTGGGAATGAT GTTGCAGAGTTTGCCATCCGAGAAATTGGAGCAGGTAGTGCAGATCATAAGGAGGAGAAATGGGAATTTGAAGCAGGATG GGGATGAAATCGAGCTTGATATTGAAGCTGTTGATACAGAGACCCTTTGGGAGCTTGATCGTTTTGTGACCAATTGGAGA AAGATGGTGAGCAAGATTAAGCGGCAGGAACTACTAATGGTCAATAATAATAATGACAATGACATTGACAATGATAATAA TGTGGCACCAAACAATGGCAATGGGGTAAAATAAAGCCTTGCTTGTCCTTTTTCTTCTGTTGAATGGGTTTGCTTTCCCA CGCAGCATGGAGAACAAGGTCATTGCAACATGCTAATGTTTTTGTTTGTGTTTACAGGAATCACCAGCTAGGGAGAATGT TGATGATGATGCAGCTGAACCACCAATTGAAGGGAAGAAGCAAAAGAAGATAGAAGCAGCTGGGGATGAAGATGTTGACA TTGGAGACGAGATGCCAATGAACAATGAAGATGTTGACATTGGGGATGAGATGCCAATGAACAACTTCCCACCTGTGGAG ATTGAGAAAGATAAAGATGTCGCCGGAGGCCATGCGAGTAGTTCTAGTAGCTCTGGCAGTTCTGGCAGTGATTCCTCATC ATCAAGTGGTATGAAACCTTTGCCCTGCATTGTGGTTGAAACTATCAACTATCAACTATCAACTATGCACTACAGGAATC TAATTTTGTATATTGTCACAGATTCGGACTCTGGTAGCTCATCAGGGAGTGATTCTGAAGCGGAGAATGGGAATTTGTAG CAGTGCAGGGCAGGGCTTTTGGAGCTAGTGGTCAACAAGAAGACCAGTGCTGGATAGCGGATGAAGAAACGTTTGCTTCG TTGTGATTATGCTTTGACTGCGTGAGCTAAGTATGTCAATTCAATTGATTCTGGTTGCTGCTATCGCATTTTCAGTGTAA TTAGGCCAAATTTATGATTGTGTTTGATTTTGTGTTACAGGGGTTGTGGACATTGTTGGTGGGTTGTTTCTGAGTGGAAG TAGTGGCTAGTTGCGTGATGTCACTACTATGAGCACTTGTTCCCAGGGGTTTGAACTTTGAATCGTCACTTGCCTGTAAA AGTGATTCCGTAAGCAAGAAGGGTTTGGAAGATAATGGACAAAATTTCTATGTCGGAATGCTGTGACATGCTAGTCTGAT AGATGCGTCAGAGAGAGGGAGGGTAGAGGGATAGAGAATCAGTAGAACTAGTTAGTGCTTTCTTACGTTTCTAACTTGTA CATAGTAGATAAATCATCCTTCGTGAGAAGGCAATTTTGTGGATCAGCAAGTAAACTTGATGGGATTGTTTATGAGATGG AGGCTACTTTTTCCATTTTGTATCTATCATGGAGGCACTTCACCGTCATCAACCAAGTAAAGTGAAAGGAAAAAGGGAGT AGTATCGTCTGGAAATCAAACTGTGTTTTGTGTAATAATTGTGCTTGAAAAGACACATTCAGCTAAGAGCCCGGAAATTC TCATGATTTTGAATAACAATTTTATCAGTATAGGAAGAGATGAAGCTGAAGCCTTCAAGGTAGAGAGTACAATGAAGAGT GCCCTTTGCGGGAGTGGGGCTGTTAAATAACCTCACTCCCCAGTCCCCATTGGCTTAGTATAATTAGAAAATGATGTTCA TTTCATTTGAATTGTATAAATGATTTTTTGGTAAATTATACTATCTCTTTGTGACCTTTTTATCTCAATATTCATTTGTT ACTTGAATTTATTTATAGACCAAATTGCTGGTTTATGGGTTTGTTAACGCCTAGGCAA
CDS sequence (LotjaGi4g1v0042000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGGCGGTCTTAGCCAACCGTAACGAACCGAACTGGCCGCAGCAGCACAGAGGCGGTGCAACAGCAACAGGATT CATGGCGAAAACACCCTACCCTAATTCAAACCCTAACCCTAACCCTAACCCTAAATTTCTCAACAACAAGAGGACTCAAT CACCTTCCGATGACGCTTCCTCCATCAATCGCCGATCAAACGATGCCGTCTCCAACGGCTATTCCAACTACGCCACCTTC AACATCGCCTCGTACAGCAAGAAGGAGCTCAGCGAGCTCAAGGCGCGTCTTCAATCGGAGCTCGAAATCGTTCGCCAGGT CAAGCTCCGATTCGAGGCCGTCGAGTTTCAGCCCCGGCCGATGAACCACAACCACAAGAAGCCCGTGAGCAAGAAGGTTG CCGGCACCAAGCGGCCGTTTCCGGCGAAGGATTTGAAGCGGTCGCAGTCGGAGGTTGGGAACATGATGAAGGGTTGTGGC CAGGTTCTGCAGAAGCTGATGAAGCATAAATTCGGGTGGATCTTCAACGTTCCTGTTGATGTTGTGAGTTTGGGGCTTCA TGATTACTATGATATAGTGAAGAAACCCATGGATCTGGGTACTGTGAAATCGAATCTGGCCAAGAATGTGTATGCTACAC CGTCAGATTTTGCGTCCGATGTGCGGTTGACTTTCAACAATGCATTGGCCTACAACCCTAAGGGTCACGATGTTTACGCC ATTGCAGAGCAGCTTCTGGTGAGGTTTGAGGAGCTGTATAGGCCGTTGCATGAGAAATTCGAAGAGCCTGTTTTCGATGA GGAATTACAGGCTAGCTCTTGGAACCATGTTGAGCCAGAGAGGGTCATCAAGAAGAAGGAAAACCCAACCCCTCTTCCTC CGTCTGCGAAATCGCCAGAGCCATTACCTGTCCCTGAAAGGACCTCAAACCCTCCATTGCTGCAGTCGCCTGTGCGCTCA TCATCGCCAATGCAACCTTTGCCGCAGCCTACGAGGATGAGGCCCGCTTCGAAGCATCCGAAACCGAAGGCGAGGGACCC TAACAAGAGGGAAATGAACATGGAGGAAAAGCAAAGGTTGGGAATGATGTTGCAGAGTTTGCCATCCGAGAAATTGGAGC AGGTAGTGCAGATCATAAGGAGGAGAAATGGGAATTTGAAGCAGGATGGGGATGAAATCGAGCTTGATATTGAAGCTGTT GATACAGAGACCCTTTGGGAGCTTGATCGTTTTGTGACCAATTGGAGAAAGATGGAATCACCAGCTAGGGAGAATGTTGA TGATGATGCAGCTGAACCACCAATTGAAGGGAAGAAGCAAAAGAAGATAGAAGCAGCTGGGGATGAAGATGTTGACATTG GAGACGAGATGCCAATGAACAATGAAGATGTTGACATTGGGGATGAGATGCCAATGAACAACTTCCCACCTGTGGAGATT GAGAAAGATAAAGATGTCGCCGGAGGCCATGCGAGTAGTTCTAGTAGCTCTGGCAGTTCTGGCAGTGATTCCTCATCATC AAGTGATTCGGACTCTGGTAGCTCATCAGGGAGTGATTCTGAAGCGGAGAATGGGAATTTGTAG
Protein sequence (LotjaGi4g1v0042000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAVLANRNEPNWPQQHRGGATATGFMAKTPYPNSNPNPNPNPKFLNNKRTQSPSDDASSINRRSNDAVSNGYSNYATF NIASYSKKELSELKARLQSELEIVRQVKLRFEAVEFQPRPMNHNHKKPVSKKVAGTKRPFPAKDLKRSQSEVGNMMKGCG QVLQKLMKHKFGWIFNVPVDVVSLGLHDYYDIVKKPMDLGTVKSNLAKNVYATPSDFASDVRLTFNNALAYNPKGHDVYA IAEQLLVRFEELYRPLHEKFEEPVFDEELQASSWNHVEPERVIKKKENPTPLPPSAKSPEPLPVPERTSNPPLLQSPVRS SSPMQPLPQPTRMRPASKHPKPKARDPNKREMNMEEKQRLGMMLQSLPSEKLEQVVQIIRRRNGNLKQDGDEIELDIEAV DTETLWELDRFVTNWRKMESPARENVDDDAAEPPIEGKKQKKIEAAGDEDVDIGDEMPMNNEDVDIGDEMPMNNFPPVEI EKDKDVAGGHASSSSSSGSSGSDSSSSSDSDSGSSSGSDSEAENGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 524 | 524 | 7.5E-150 | – | |
| MobiDBLite | 1 | 70 | 70 | - | – | |
| PANTHER | 1 | 524 | 524 | 7.5E-150 | – | |
| MobiDBLite | 42 | 70 | 29 | - | – | |
| Coils | 87 | 107 | 21 | - | – | |
| Gene3D | 121 | 268 | 148 | 5.4E-38 | ||
| SUPERFAMILY | 148 | 265 | 118 | 7.06E-36 | ||
| SMART | 148 | 258 | 111 | 3.3E-29 | ||
| CDD | 155 | 253 | 99 | 5.10953E-57 | ||
| Pfam | 159 | 243 | 85 | 3.5E-20 | ||
| ProSiteProfiles | 167 | 239 | 73 | 18.088 | ||
| PRINTS | 170 | 183 | 14 | 1.8E-17 | ||
| PRINTS | 186 | 202 | 17 | 1.8E-17 | ||
| PRINTS | 202 | 220 | 19 | 1.8E-17 | ||
| PRINTS | 220 | 239 | 20 | 1.8E-17 | ||
| MobiDBLite | 280 | 350 | 71 | - | – | |
| MobiDBLite | 292 | 310 | 19 | - | – | |
| MobiDBLite | 311 | 327 | 17 | - | – | |
| ProSiteProfiles | 342 | 423 | 82 | 21.347 | ||
| Gene3D | 345 | 422 | 78 | 1.3E-25 | ||
| Pfam | 351 | 413 | 63 | 1.4E-22 | ||
| Coils | 369 | 389 | 21 | - | – | |
| MobiDBLite | 419 | 527 | 109 | - | – | |
| MobiDBLite | 419 | 448 | 30 | - | – | |
| MobiDBLite | 449 | 463 | 15 | - | – | |
| MobiDBLite | 489 | 527 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0042000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…