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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0074700 |
| Transcript ID | LotjaGi4g1v0074700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1MUG7|I1MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9546485..9554936) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTGAACCTTACAACAAGTACGAGTTTCTCTCTATCTCTCTCAATCTCTTGATTATCTGCATAAAAAACGAATGAAT TCGAATCGGGAATGTTGATTTTGTTTGAATGATTTTGTTGTTTAGGTTGGTTAAACTAGCAGCAAGGGCTTTCTATGATG ATCTTACCAGCAAAGGAGATAATCAACCCAAATCAGGAAGAAGTGATAACAGAGGAATAGCTGTTGTCGTTCTTGATGCA CTCACAAGGTTCCTTCAACCTTTTCACATATATATATATATGCCTTTATCACTATTCATATTCCATAATATACATATTGA AATGTCATACAGCATTCACACTTCAATTCAAAATTAAAACTTTTATCATCATAGTTGAATGTAGTACATATCAGGGTTGT TAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCAATTTCGAGTGCTATTTCGGTGCTATAGCAGTGAATAG TGCAGTAGCGGTGAACCCCAGGGCGCTACACTATAGCGCTTTTGTGCCGCCATGGCGGGCTATTAACAAGCCTACTACAT ATATGAAAGTAGAAAGGAAGGGGAACTTAACTTTATTGAATTTTAAAGTGAAATAGAGAGAATTCACAAATTGGGACCTG TAAGTTTGTTAGGACCTGTGAACCTGGAAACTGGGGTTGTTATTGTTAAGCATGCTGTCATGAAAAGATGGATTTTGATA TTTAACTTTTGTGGAGTCTAGAATATTGTGTATATTGTATACCATGATGGAGGGTAGTGAGGAAAGGCAAAAATGATACG AGTTTAAAGTTGACTGTGTGAATTTGACAAATAGCAGGTCTATTTATTTATTTAGTTAGTTTGAGTTTTCATTATACTGG TGTTGTGTCCAGACGACAATGGGTTAGAGAAGAGGACTTGGCAAAGGACCTCAAGTTGCATACTAAACAACTTCGTCGAA CTCTGCGGTTCTTTGAAGAAGAAAAGATTATTACTCGAGATCATAGGAGAGAGGTAACTATTCGATTTTGTGAATGCATT ATTTTGCTGCAATTTGTGAATTACTTGACCGAAAAGCATTAGTGATACAATAGGCACGTTCTGTTGTCTGATCCATTGTT TGATCGTGACACACTTATGATTTGAATGAGCTTATCATGCTAACACAATCAGTTACGATTGGACCCAGTGCACTAGAGCA TTTAATCAAACATAAAATGCTTATTGTGGATTGTTGTTTATAGATTCCATTATACTCTTTGTTCCTGCTCCGTGGCTAGA ATCTTCTTGATAGAAATCCAAAATAGGCATAGAAAAATGCATTCTCGTATTAATTCTGAAAAACTAAATGCATTCTTCAC CCTAACAGACTCATAATTGGCTCTATTACAAACTAACTAATCAGTTACAAGATACAACAAACTTAACTACAAGTTTTTGA CTCATACAACTATTATTGTGGAATCACAGCAATCAAACATATCTCTAACACTTTCAATTTGTGCTATTCATCCATTAATG TGTGCTTTTTTTGTTTTGTTTATTTTCTAGATATTTTTTCATTGGCAAATTTGGGCATGCTTGGGAGTTGTGGGTCAATG TATTTGTCATGTACATTTTTTACATATGTTGCATATTGTATGATTTTACCACAGACAGCAAAAGGTGCAAAAATTTATAG TGCTGCTGTAGCTGCTACAGCTGACAGTCAACAGACAGGAAAAGAGGGAGAAGAAAAGGTCAAACTGCACACACACTCTT ACTGCTGTTTAGATTATGCACAGGTCCATCTTTCACTCTACTTATTCTATAATTTCAGCTCTATCAGTGATGTTGGGGTG TTTAATTGCAGAGAAATGGGGAAAATAAATTTTATTTTGCTTGTTTTTCGGGCAATTTCTTAGTCAGCATAGCCAAATAC CATTTCGTGTATAGAAAATCTTATGTCAAATTTCATTGCAGATATATGATGTGACTAGGTACAGACTGCATCGCATGAAG CATAAACTGAAAGATGAATTGGATAACAAAAATACACTTCAGGAGTACATATGTCCAAACTGTGCAAAAAGGTTTATGTC ATTCATTGTGATATCAATATCGTAATCTGTTACAACTACTTGTATTGATGTATTTCTTTTCCATAATATTTTGAAATTTG AATTATTTTAGATACAATGCTTTGGATGCACTGCGGTTAATATCTTTCGAAGATGAGGACTTCCATTGTGAAAGTTGTAA TGGGAAACTAGAGGTTGAAAGTGATAAAATAGCTGCTCAAGAAGGTGGAGATGTGGATGATAATGCAAGAAGACGACGGC ATGAAAAGTTAAAGGACATGCTTCAAAAAATGGAGGTTATTATATGATCTCATTGTGATGTTTATTTCTATTTGTGACTT CATATGATAGATCTCTATATTTAAAGTTGTTGTTGCTGATGATTGTTATCATTATTCTTTGCTAGAACTAGGAAATTTCT TAACCAAAGTAGTTTTCTAGCATGTAATGAATGCTTTATTATGTTTGATGTGGTCGAATCATGTATATATGGGTTAAAAG CTGTTTCAAGGGGGGGGGGGATTTCAGTGTAACCATAAGAATTTATCATACATTGATAGGAACCTGATTTTTATTGATAG AAAACCTAATTCCCAATTGGAAACTAGGGGAGAGATACAAGAGAAAGGGATACCAAACACCCTCTCTAACCGTAGAAAGA GAACCACTTCTCTCTCTAAACTCAATTCCTAACTGAATACAAAGATACTCACTAACTCTCACTCACCCTTATTTATAGGC TACAAGCCTCATTAACCTTCTAACTAATTCCCCAACTCACTAACAACTACTAACAATCCTTATCTACTAACTATCTAAAC ACCTGTACCTATCAATACTCTGATTTTTTATTGATAGAAACCCTAATTCCCAATTGGAAACTAGGGAGAGATATACAATA GAAAGGGATACCAAACACCCTTTCCAAGCCTAAAGAGAGTACGACTTCTCTCTCTAACCCAATTCCTAAACTGAATAACA AGATACTCACTAACTCTCACTCACCCTTATTTATAGGCTACAAGCCTCATTAACCTTCTAACTAATTCCCCAACTCACTA ACAACTACTAACAATCCTTATCTACTAACTATCTAAACCCCTGTACCTATCAATACTCCCCCCCTGAAAATTCACCTTGT CCTCAAGGTGAAGGACAAAATACAAGCAATCTAAATGAACAGCTATGCCAAAGAATCAATGGTGACCACCCATCTTCCAC CTGGATCCCATAGCATGAAGCAAATAGCCTCAGTCATGTATGAATGGTTGAACACCTTCCCTGGGCTCCCAAAACACATT CTGCTAAGAGGCATATGGCAGAAATTCCAGCAGATTCCCACTAGAAATAGCCAAGGAACAGCAACTTCAAAAGCAAACTC AGCTGATAAAGAGTGGGTAAACATCTCCCCATTTCCAGCCCACAGATGCTCAAAGAGACCAATACTGGAATTGGTAAATA TGTGCCCAAAACTAGCTAACAAAGTCTCAAGCAGTCCAATATGTGAATCAACACTAAAAATAAAATTGGGAAGCAGCTTC CCCGCACAAACCATGAAGTCCTCAAGAAGCTGCGTGCTTGAATGAGAACTAAAATCCAAGCCTCCTCCATGTGACCCAAG TTGGGTGAAGGTCCAACTTTCACAAATAAGTTGATACCTCCAATTCTGCTCATGTCTCCAACCCAAAACATTGAGCTTAG CACTATGAGAATCTAAACTTTGAAACCCAGCAACTAATTCAGCAGAAACATTTAGTTGGCATGACCAAGAACTTGAGTGA CCTTGTGTTAGAAATGGTGGAACAAAATAATTTCCCCAAACCCAGATTTTTATCACCTCCCAACATGCAAACCTCCAAAT CTGTTCATGTTCCCACCTTAGCAAATTGATCTCAGTACCCATGAATTTCCACTCACCAAATCTGAATTCATTTGGAATAG CAACCTGACTCAATGTAAGGTCTGAATCGTGGTAAAACTCCAAGCTATTTTCAACATATAGTCGACCATTTGAGCTCTCA TGGGCAACTCCAGCTGCTTGTTGAATTTGATAAATCCAGACCAAATCCAAATTTTCCTGGGGTTTCCGTGTCTCCAGAAC CCATTTTCTAAAATGGCCTTGGCTCATTTGTTCATTAAGTAGTTGGAGTGTACATCCCCTGCATGTTGCTCTCACCAAAC TCACCCATTTGCTGTTCCCTCCTTGAGCTGCCAGCAAATAACTCAAAGACTTTGCCATCAAGACACCTGGATCCCACTGC AAATAGCTTTTTAACCAAACATATATTCCAAGGTTTTCAACAACTCCTGCTAGTTGAATTTGGCACAGAAAGTCCAAAAT TGTCTGGGCCTTTACTTCCTGCCAACATGTAATCATTGCTTCCAAACCAGTCTGACAAATCAGACACAACACACATGACT CACCTATCTCCTTCACTCTTGCTATCGTAAGTCTGTTCCCCAAAGCTGCAAACTGTGGAAGAGAGTCGCAGATCAGAAGA TCTATCAACAGAAGTGGGTTTACCTCGTCTTCCATCAGAACTCTGGCCACCGTACATCCTTGGTTTGGTGGTTTCGCCGG TGAACGAGAATCCTTTGCCAACAATTCTCGGTCTGGCGGTTGCGGTGGTGGGAGAGGCCTCGCCACCCTCCCTCGATGAG TCTTCTTTGACGGCATGGAGAATCGACGGAATCCACTACCATTTTTGAATTTCTGGGTCCTGCTTCTCTCTACCCCCAAT TTCAGAATTCTTGTTCCGTCGAAGAACCCTAAATCAACAATTTGGGGATAAACGGCGAATCCTTCCTTCTCAACACCTCG AAGGTTGCAATTCTGTAATCCTTCCATTAATGAACCTTCGATTGCCGTTTGATTCCGTGTCGCAATTGCCTCTCTCACCC CACCATATCTTCCTTCAACCTCTGTTTCAAAATTGAGGTTCTGAATCGCCTCCGCCACCGCTGAATCTGTCGTCGTCGCG GCCTCAACATTCGCCGGCGATGCCTCTGCCGCAACTCGCTCTTCCTCCACCGCTTCAAGATTGAGTCTTCGCAACGGCTC CTCTGCCTCCGCTGCTTCTCGCTCTTCCTACGCCGTCGTCTCCAATTCACCCTCTGTTCCAAGATTCGGTTTCTGAATTG CAGAGGTTGGGTCTTCCTCTTCTTCAGATGCTTGTCCGCTTCGATTGTCGCCTCTGATTCTTGCCTTTCTTGTTCCATCT TCTGCCTTCTTTCTTCAAGTTCCCTCCACTGATTCTTCATTGACTCTAGTTCCCTTCTGCTCTCAGCAAACTCCTTCTGC AATTCCTCTACAAGAGCAAATATCTCCCTCCTTTCCTCACGTGAAAATGAATCCATGAATCCTCTAGCCATGGATGCTGT TGCAGTTGAATCTTCTTGGCCAGGGCACCTGCATCGGTGCTCTGATACCAATGATAGAAACCTGATTTTTTATTGATAGA AACCCTAATTCCCAATTGCAAACTAGGGAGAGATACAATAGAAAGGGATACCAAACACCCTTTCCAAGCCTAAAGAGAGA ACCACTTCTCTCTCTAACCCAATTCCTAAACTGAATAACAAGATACTCACTAACTCTCACTCACCCTTATTTATAGGCTA CAAGCCTCATTAACCTTCTAACTAATTCCCCAACTCACTAACAACTACTAACAATCCTTATCTACTAACTATCTAAACCC CTGTACCTATCATACATAGAACTACTTGAGTGCCAATTAGGTCTATATTCTAACCCGCATCAATTGATAGTTTTCTGGAA GATGGTTTCTTGATTACTAGACCTCTCCTTTGTGTTTATGCTGCTATGACTTCAGTGGAATCATTATACTTATCATACGC AGCTGCTCGAGCACCAATTAGTTCTATATTCTAACCATACCAATTGGTACTATGTGGAAGGTTCTTTATAGATATATATG TCTCCTTAGTATGTTTAATATGGGCGTATCAGTGTGTGTGTGTGTGTGATGGACACATGTGCTAAGCATATTAAGCATAT ATTTGCATTTTACTTATCAGTGTCGATGAGTGTCAAAATGAATGTTTTTAATATTCCAGACCATATTTTCCCAAAGGAAG ATGCTCTCCTAACCATGTGAAAATTATTTTTATTTTACACTTATAAAAGGAATTTGTCCATAGAACTCTTGAATTGAAAT GGAAAAATAGATGTAACTCTAGTGGAAGTGCACTGGTGTATGCAACTGAGGCATCCTTTATTCCTAACAGATCGATAGAC TTGAACCTTGCTCTTGCATGATCCGATCTATTCGATCAAGCACTCGCCATCTATTTCCATAGTTTAACTATTTGACAACA TAAAAACCAAAATCTTTGAGCCAAATCTTAAACCATTCTTTAAGTTTTTCGACAATAGTTATAGTCCATGTTTGTATATG TAATAAGCTGATTTTGCTTGAGGAAGTACTGAACCACTGGTTAGAGCTAGAAGTCCGTGGGTTTATGCATTAAGTAGATT TTGTTGGGGCAAGTACTAATTAGAGCCTTAAACTTAGCCAGTTTATGAGTCTAATAATTATTTACAAACTTGGCTATAGT CATAATTGTTCTCATCTGAATTTCATGATAAATTGCTAGAACTAACACTAGATTGCTTGAAGTTACAATTTAATTTGCAT GTGATGTCTGTCTTAATCCTTGTGCTGGTGCAGGTACAACTCAAGCCTTTAATGGACCAACTCAGTCGGGTAAAAGACTT GCCTGTTCCAGAATTTGGCAGTCTTCAAGCATGGGAAGCTCGAGCTAGTGCGGCAGCGCGTGCTGCTAATGGAGATATCA ATGGTGGTGATTCTAAAAATTCTCAGCTGGGATATAATGGAGCTCCAATGCCTTACAGCGGAGATACTAAGGTAAACATT ATACTGCTTCAAGGAAGATATCATTTCTGGCATACAGTTTTTAGGAACCACAAATTGAAAAGAAAGCAAGAGAAAATGAT AGAAAGAAAATACGGAGAGGCGATGATAAATTTGTATTATTTGAAAATTAAAATATTCCATAGCTGTAAAACTTGAACTG AACCTTCTTCCGATACAAGAGATAACTTTGGGACTAACTTTGCCATCTAGGCTGGCATTTGGTTAACTCATAGAACCTAC GTGTTGTGCATTCTAACAGAGAGAGACCAAGCAGACATGCTACATGCTTTAAAATGGGATGTACATAACTACATACTTTT TAATTTAAGATGGTGGTTCTTTGAATTTATATGAACTTTTTAAGAAACAAAATGGGCTGAAAGGACTAACCTATATAGGG CAATCATACTAGAGCAGACCTAAAATTGGCTTGACATGAATGTAAATAGGATCTCTGCATGAATGTACTGTGCAGGTAGT AGAGAATGAATCCTCTCATTGTGAAATTTCACATGTCTGTGTCATGAGAAATTAGCATGAGAGAATCCATTTCAGTTGGT GGTATCATGATGTGTCCATTGTATTAGGAACATGCTTTTCCAACTTGCTTGATTATCGTGGTCCTATGTATGTTTTTCCT TCTCCCTATTTTCTGTTTGTGCTCCTGGTTAAAGTGGATTTAACCTCTTCTTTTATCTTGAAATATGTGACAAGTGAATG CATGTGAAGGACAACACCTTGGTTGCTCTCAAGATATATTATACTGAATTTTCTATGCAATTTTTAATTTTAACATTGAG TGTTATCTTTCTTAAATTGTTTTAAAAGCACTAAGTAGTCTATTGTGGATATGGACAGGTTGTAGTTGACTTCAATGGTA CCGAAGTCAAAGGAGAGGGTGTTAAGTCTGAAGCTGATACATCTTTAAAGGTTTTACCTCCATGGATGATTACGTCTGGG ATGAATCTTACAAAGGAACAACGTGGAGAGGTGAAGCAGGAAATGAAGATGGACGGTACTTCAACTTCAACAGCCGCACA GTACACGGATGACAAGAAATCATCAATTGGGCATGATGATAATAAGAATATACAGGCATATAAAATAAGATGAATTTTAA TTTTCTGTCTTAAGATAACTCAAGAAAGTTTTTGTTTCACTAATTTTTTTTCTCCTTTGCCTACTTTTATAGGATGAGTA TATTAAGGCTTATTATGCTGCTTTGCTTAAGCAGCAAGAAGAAGTTGCAAAAAATCAACAATCAGTAGATACACAAGCTG CAGATGATCCTTCTAGCAGTACTTTCGGTCGCCAGGTTGGCATGAAATCAAAACGTGAGGAAGATGACGATGGTACTGAG AGGGAAGAGGCTCCGCTGGGAGGTACATTTAGTCTTTTCAAGATTAGACTGATATTTGGACCAGTTAAAATATTGAATAC CTGGACATATATGTTTAGCCTCACTTGCTTCCCATCTAAAAGTCAAAATTAG
CDS sequence (LotjaGi4g1v0074700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAACCTTACAACAAGTTGGTTAAACTAGCAGCAAGGGCTTTCTATGATGATCTTACCAGCAAAGGAGATAATCA ACCCAAATCAGGAAGAAGTGATAACAGAGGAATAGCTGTTGTCGTTCTTGATGCACTCACAAGACGACAATGGGTTAGAG AAGAGGACTTGGCAAAGGACCTCAAGTTGCATACTAAACAACTTCGTCGAACTCTGCGGTTCTTTGAAGAAGAAAAGATT ATTACTCGAGATCATAGGAGAGAGACAGCAAAAGGTGCAAAAATTTATAGTGCTGCTGTAGCTGCTACAGCTGACAGTCA ACAGACAGGAAAAGAGGGAGAAGAAAAGGTCAAACTGCACACACACTCTTACTGCTGTTTAGATTATGCACAGATATATG ATGTGACTAGGTACAGACTGCATCGCATGAAGCATAAACTGAAAGATGAATTGGATAACAAAAATACACTTCAGGAGTAC ATATGTCCAAACTGTGCAAAAAGATACAATGCTTTGGATGCACTGCGGTTAATATCTTTCGAAGATGAGGACTTCCATTG TGAAAGTTGTAATGGGAAACTAGAGGTTGAAAGTGATAAAATAGCTGCTCAAGAAGGTGGAGATGTGGATGATAATGCAA GAAGACGACGGCATGAAAAGTTAAAGGACATGCTTCAAAAAATGGAGGTACAACTCAAGCCTTTAATGGACCAACTCAGT CGGGTAAAAGACTTGCCTGTTCCAGAATTTGGCAGTCTTCAAGCATGGGAAGCTCGAGCTAGTGCGGCAGCGCGTGCTGC TAATGGAGATATCAATGGTGGTGATTCTAAAAATTCTCAGCTGGGATATAATGGAGCTCCAATGCCTTACAGCGGAGATA CTAAGGTTGTAGTTGACTTCAATGGTACCGAAGTCAAAGGAGAGGGTGTTAAGTCTGAAGCTGATACATCTTTAAAGGTT TTACCTCCATGGATGATTACGTCTGGGATGAATCTTACAAAGGAACAACGTGGAGAGGTGAAGCAGGAAATGAAGATGGA CGGTACTTCAACTTCAACAGCCGCACAGTACACGGATGACAAGAAATCATCAATTGGGCATGATGATAATAAGAATATAC AGGATGAGTATATTAAGGCTTATTATGCTGCTTTGCTTAAGCAGCAAGAAGAAGTTGCAAAAAATCAACAATCAGTAGAT ACACAAGCTGCAGATGATCCTTCTAGCAGTACTTTCGGTCGCCAGGTTGGCATGAAATCAAAACGTGAGGAAGATGACGA TGGTACTGAGAGGGAAGAGGCTCCGCTGGGAGGTACATTTAGTCTTTTCAAGATTAGACTGATATTTGGACCAGTTAAAA TATTGAATACCTGGACATATATGTTTAGCCTCACTTGCTTCCCATCTAAAAGTCAAAATTAG
Protein sequence (LotjaGi4g1v0074700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKI ITRDHRRETAKGAKIYSAAVAATADSQQTGKEGEEKVKLHTHSYCCLDYAQIYDVTRYRLHRMKHKLKDELDNKNTLQEY ICPNCAKRYNALDALRLISFEDEDFHCESCNGKLEVESDKIAAQEGGDVDDNARRRRHEKLKDMLQKMEVQLKPLMDQLS RVKDLPVPEFGSLQAWEARASAAARAANGDINGGDSKNSQLGYNGAPMPYSGDTKVVVDFNGTEVKGEGVKSEADTSLKV LPPWMITSGMNLTKEQRGEVKQEMKMDGTSTSTAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEVAKNQQSVD TQAADDPSSSTFGRQVGMKSKREEDDDGTEREEAPLGGTFSLFKIRLIFGPVKILNTWTYMFSLTCFPSKSQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 434 | 432 | 1.3E-134 | ||
| ProSiteProfiles | 5 | 137 | 133 | 31.767 | ||
| SMART | 37 | 208 | 172 | 4.4E-60 | ||
| Pfam | 39 | 153 | 115 | 1.4E-5 | ||
| SUPERFAMILY | 39 | 96 | 58 | 4.48E-5 | ||
| Coils | 58 | 78 | 21 | - | – | |
| Gene3D | 146 | 206 | 61 | 4.8E-9 | ||
| SUPERFAMILY | 147 | 199 | 53 | 1.7E-8 | – | |
| MobiDBLite | 343 | 369 | 27 | - | – | |
| MobiDBLite | 345 | 360 | 16 | - | – | |
| MobiDBLite | 396 | 434 | 39 | - | – | |
| MobiDBLite | 396 | 416 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi4g1v0074700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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