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LotjaGi4g1v0181600.2

Overview

Field Value
Gene ID LotjaGi4g1v0181600
Transcript ID LotjaGi4g1v0181600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description AMP deaminase; TAIR: AT2G38280.1 AMP deaminase, putative / myoadenylate deaminase; Swiss-Prot: sp|O80452|AMPD_ARATH AMP deaminase; TrEMBL-Plants: tr|A0A072U298|A0A072U298_MEDTR AMP deaminase; Found in the gene: LotjaGi4g1v0181600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:38250721..38252506) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCACCCCTTAGCAATAATTCCCTTTTCTTGGATTATCATCGCAACCCACTGCCCATGTTTTTCCAGCGAGGTCTTAA CGTCTCTCTCTCTACGGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCACTGCTGGAAGAATATAGTGTTGCAGCAA AGGTTGCTTTCTACCAAACCCCTACCGTCCTTTGAAAGTTGGTGGAATATTCTGTTGTCTTTCGTAGGGCTCACATATTT TACTCAAACACATGCTCTGCAGGTATGGAAACTTTCTTCTTGTGATCTATGTGAGATAGCCAGAAATTCTGTATACCAAT CTGGATTCTCACATCCAGCCAAGGTAATTGAGAAGACAACTTTAGAGTATTTTGCTTCTGCTCATCAGTACTTCACGCAA AATGTTGATTGTCAATTGATATATTGAATTTGATTGTATATGACAGGAACCTTATCTATTTACTATATTAAAATATATCC ACTTCTAATAACTGTGTAGTGTGTAGTGATTCTTTTATAATTACTATTAATGATAGGGTTAATCCTCATATTGGTCCCTG TGGTTGTGTTGCCGTCTGAAATTAGTCCCTCCCCGGAAAATTTACAAAAGTGGGTCCTCGCATTTGGAAAGTGTGTGGAG CAGGTCCTCGCCGGAGCCCGGAGCTCCGGCGAGTGATGATTTGGAACGCTGACCGGGTTTACTTATGTGACGTGGCAAGG GAAAAAAATAAAAAAAAATAAAAACCCTAAATTAATCTGCTCCACACACTTTCCAAATGCGAGGACCCACTTTTGCAAAT TTTTCGGGGAGGGACTAATTTCAGACGGCGACACAACCACAGGGACCAATATGATGATTAACCCTTAATGATATTTACCT ATGATAATTCTGTTCTAGACCGGTTCTACCCTAATTAATATATTTAAGACTATCTTTAATTTTTCTTTTGCTAATTATTT TTTACAATATCTTACCTCACAGTAGATATTCATATGTTTAGAATTTTGGAATTCTTTATCTATTTATTATTTCTTTGGGA GGGGGTTATAGAATTGTAGTTTGAAAGTTTTGAATCTTATATGCTCATTTTTTTAATAACATTATCTTACACCAAAGTTG TGAAGGCTATACACGAGCTTAAACTTGTACGCTTCTACACAGCGAGAGAACTTTATGTACGTTTGTTGGTGTCAAATTGT TGGTGTTGACAAGCCTAAAATAACATTATATGTGTATTTGGATACATAAATACATTTTTTTCGAATCCATAAAGAGTTAT GTTTACTATTTATCTTGAAGTGCGGGCTAATGTCTATTTGTACTAATGCAAATGTATATCCAAATATTCGAACATGATTT ATATTGTTTAGGTCTTCTATTTGTATATCAGTTAAGTGATCACTCTATTTTTACGTAGGCTTCCCTAGAATCTTGGTTTG CTTGTTTATTCCCTGACTCGTGAATTTCTTCATTTTCTGTTATCATAATTTTTCTTCTTTCACAGTTACACTGGCTTGGC GATAAATATTTCTTGAGTGGTTCTGAAGGAAATGATATTCATAAGACAAATGTACCCGATTTGAGGGTCTCTTTCCGATA CGAGGTGGAAAATTTGAAACAAACATTTAATGCTTGCAGTTTGAAATTTTTCTTTATTATTTTGGTTGTCTTCCTTATAT TCTTTCTTGCTTACTATGATTTTTGGAGTTTATGCAGACATGGAAGGAGGAAATGCAATATATTTACGCTGGTCAAGCCA ACTTTCCTGAAGATGTAGATCCATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0181600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCACCCCTTAGCAATAATTCCCTTTTCTTGGATTATCATCGCAACCCACTGCCCATGTTTTTCCAGCGAGGTCTTAA CGTCTCTCTCTCTACGGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCACTGCTGGAAGAATATAGTGTTGCAGCAA AGGTATGGAAACTTTCTTCTTGTGATCTATGTGAGATAGCCAGAAATTCTGTATACCAATCTGGATTCTCACATCCAGCC AAGTTACACTGGCTTGGCGATAAATATTTCTTGAGTGGTTCTGAAGGAAATGATATTCATAAGACAAATGTACCCGATTT GAGGGTCTCTTTCCGATACGAGACATGGAAGGAGGAAATGCAATATATTTACGCTGGTCAAGCCAACTTTCCTGAAGATG TAGATCCATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0181600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSPLSNNSLFLDYHRNPLPMFFQRGLNVSLSTDDPLQIHLTKEPLLEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHPA KLHWLGDKYFLSGSEGNDIHKTNVPDLRVSFRYETWKEEMQYIYAGQANFPEDVDP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11359:SF9
1 136 136 1.4E-83 –
Gene3D
G3DSA:3.20.20.140
1 136 136 2.9E-67 –
Pfam
PF00962
1 86 86 8.5E-37
IPR001365
PANTHER
PTHR11359
1 136 136 1.4E-83
IPR006329
SUPERFAMILY
SSF51556
1 124 124 1.1E-46
IPR032466
ProSitePatterns
PS00485
29 35 7 -
IPR006650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003876
Molecular function AMP deaminase activity Catalysis of the reaction: AMP + H2O = IMP + NH3.
Subterm of
GO:0009168
Biological process Purine ribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar.
Subterm of
GO:0019239
Molecular function Deaminase activity Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3).
Subterm of
GO:0032264
Biological process IMP salvage Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0181600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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