Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0230000 |
Transcript ID | LotjaGi4g1v0230000.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|P56519|HDAC2_CHICK Histone deacetylase 2; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54011938..54015514) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAAGAAGAAGAGAGTCACCTACTTCTACG AACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGGATGCGTATGGCCCACAATCTCATC GTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGCCCTGACGACATCCGCCGCTTCCACTC CGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCCAATCTTCGCCCGCCAGCTTAAGCGCT TCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGGCCTCCGCCGGTGGCTCCCTCGGCGCC GCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGCATGCATCATGCTAAGAAGTGTGAAGC TTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAAAGTTCATAGGGTAATCCTCTTTTTCA CAGCGATTTTGTTTACTTTTCTGCTTGTGATGCATAGTTTATTGCCTTGTGGATTATAGACCTAGGCTCTGTTTTTTTAA ATTTATGTTGTTGAATTGTAGTTTGCAAACCAGGGTTTAACCCTAATTGAATTTCTTCCCATTTATACTCCCAGCCACCC AAAATCATGTTCAATCTGGAATGAATTTGCCAAACATGTTAATGCTGTTGTAAAAATTGCCAGATATATACTTTGGGACC CCTTGGCAAGGAATTAAGCTTGGCACAAGAGAAAGAAAAGGCATCTTCACAAGCCCCAGTTTCTGGGGTGTCTTGTGTTC CTAGCCGGGCACCCATGATACTTCATTGACCTAGGGATTAAGTTCTCTACCACAGCTGTACCACCACACCAGTATTGTCA AATAGCCGACATAGCGGCGCTTTAGGGTAGTGCTCTGCCATTATCCGCTATTGTCCACTCAGAGGGCTTTCCATAGCGGA TTTTTGGCTTTCTGCTATTTTCTGCGATATGTGATCAACAACATTTTACCACTCCAATACTATTATCAGGTGGTTTTGGT GGCGGATGTTTGTTCGTCCCCATCTTCTTCTTTGCTAACTTTGTCACCCTGGCTGCTACACGAGCCTTCATGTGCTTCGA ACATAATTCTTGGCATGAGGAACCATCCACAATGACACCATCGTACGGGAGTGGCAGCCTTAGTGAGAGATGGAGCGGTA GGTTCCCATAGTAGTTAGTAGTTTAGTCAGTGGAAGCACACATGGAAAGGAGGAGAGGACAAATCAGAGACTGAATTTCA AATTGACTCTGATTGGCGTAGTGGGTGAGGTCCATATTTCTCCAATCAGCTTCGAGCCCTAACTGGTGACCTCGGCTTTA TCCGGATTCCGGTGTGTCTTTTGCACCTTCAGTATATGGAAAACTGATGATAACTTACCTTCTCCTTGAGGACAAGGTGA ATGTTCAGGGGCAGATTAATAGTTTAGTTAGTTTATTGACAGAGATAGGTAGAGTATAGGGGAGGGAGTATTATTAATAA TAGAAAGTTGAGGAGGATTATCATCTTTGGGATAATTGTAATTGACAATTAGGGAGTGGTGTTGCGGAATTACTCAGCAA ACCAAATCATAGTTTCAATTGATATTCTTGAATAACATCAGTTCTGTTCTTCTGCATTGGCTGGTTCCTCTCAACATAAT CCTTGCCACATCTTTTTTGGCTCAAGTCCTTTAACAGTGCACATTTGTCCTTTTCAATTTTTCATAGTTCTGTGTGAAAA TCAAATTTATGTTTCTGCTTACTATTACTTGTATTGTGAGTTCTTCTTTTGTTCTGCATGTCATGTGTTTTCTTCCTTTC ATATATTTATTGTTCTCACTATCTGTTCTATATGACTTGGCAGCGTGTGCTGTACATTGACATAGATGTTCACCATGGTG ATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTATCTTTCCATAAGTTTGGGGACTTTTTCCCCGGC ACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCTCTCAATGTCCCATTAAATGATGGAATGGATGA TGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTATCAGCCCGAAGCGGTTGTTCTTCAAT GTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTC GTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATTCGGAATGTGGCTCGTTGTTGGTGTTA TGAGGTCTCTTTCTTTCTGTTCTTGGGCAGGACTAAATGTGATTTGGTATTAGTTTTAACGTTTCTTATTTGATCACATA CTGTTTACTTGTTTTAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTACAATGAATACTATGAGTAT TTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAGAATAAG GTGCTTTTACTATTAATTTCTTTTTGTTTGGATTAGAATTGTTTATTCTGATCTCCTTATTTATTTATTTATTTATTATA ATTATGGTATAAATTAACAGTCATAAGTAGCTACGAATGTAATTATTGAAATGGATTGTATTTTGTTGCTTACTCAAATG CATTATGTTGCAGCCAAGTCTCATCAGTCATCCCTTCTGTGATCGATGATATTTTCAGAATACTATGAATAATTGCATAA ACAATCTATAGTTTATATCTGGCATTGTTGTTTCATGTTGATTGTGAGGACATTGTATTGTCTGAGATAATCCTTCTTTG TGGGCGAAGGGGGGAGTTTGCTATTTAATGTACTTAAAATACAGATAGTCCTTTAGATGGAAAGGAAGGTCTCTGGTACT GAATGCTGTTCTGTTCTGTCCAACATGGAGCTTCATATGTATGGTCTTATTTTTTAATTGAGGGATTTTATGTTCATTCT CATATCATGTGTCACTTTTGCGGCTGAATATAACTGCTACATTTCCCTTGGAGCCAGCACTGGCTAAATGGATTCTTTTT TACTTTATTTCTAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACC ATCAACCACAGAAGTGCCAGAGGAGGTAGGTACTTAGTGACAGTCGCAGTTATTGTCTTCCTGTTTTTCTCTTGTTTTTG TTTGATTTATTAAGTATGGATTCAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGAAGAGT ATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAATGGTTATAT ATTGTTTGGAATCTGAATAAAAAATCCATTTAGTTTATTAGTCCCTTTATTCAGTAG
CDS sequence (LotjaGi4g1v0230000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCCCACCGGATGCGTATGGCCCACAATCTCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCC CTTCCCCGCCGGCCCTGACGACATCCGCCGCTTCCACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGA CTCTCTCGGAGCCAATCTTCGCCCGCCAGCTTAAGCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTC AATTACTGCCAGGCCTCCGCCGGTGGCTCCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAA TTGGGCTGGGGGCATGCATCATGCTAAGAAGTGTGAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCC TCGAGCTTCTCAAAGTTCATAGGAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTATCAGCCC GAAGCGGTTGTTCTTCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCA TGCAGATTGCCTTCGTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATTCGGAATG TGGCTCGTTGTTGGTGTTATGAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTACAATGAATACTAT GAGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAG AATAAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACCATCAACCA CAGAAGTGCCAGAGGAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGAAGAGTATGATTCT GATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAA
Protein sequence (LotjaGi4g1v0230000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPHRMRMAHNLIVHYSLHRRMEINRPFPAGPDDIRRFHSDDYVEFLASVTPETLSEPIFARQLKRFNVGEDCPIFDGLF NYCQASAGGSLGAAVKLNRGEADIAINWAGGMHHAKKCEASGFCYVNDIVLGILELLKVHRNFRVLFQAVIQKVMEVYQP EAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFVKSFNVPLMIVGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYY EYFGPDYTLHVDPSNMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRPQCRKWNGEEYDS DFDEDEKDDLKHSKLTDHMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 143 | 143 | 5.5E-53 | ||
PIRSF | 1 | 146 | 146 | 1.0E-66 | ||
PANTHER | 1 | 142 | 142 | 4.2E-194 | – | |
PRINTS | 1 | 18 | 18 | 3.1E-41 | ||
SUPERFAMILY | 1 | 278 | 278 | 1.34E-79 | ||
PANTHER | 1 | 142 | 142 | 4.2E-194 | – | |
Pfam | 2 | 146 | 145 | 9.1E-28 | ||
PRINTS | 34 | 52 | 19 | 3.1E-41 | ||
PRINTS | 67 | 84 | 18 | 3.1E-41 | ||
PRINTS | 88 | 108 | 21 | 3.1E-41 | ||
PRINTS | 129 | 145 | 17 | 3.1E-41 | ||
PIRSF | 141 | 340 | 200 | 1.4E-70 | ||
PANTHER | 142 | 332 | 191 | 4.2E-194 | – | |
PANTHER | 142 | 332 | 191 | 4.2E-194 | – | |
Gene3D | 144 | 286 | 143 | 1.1E-49 | ||
MobiDBLite | 279 | 340 | 62 | - | – | |
MobiDBLite | 300 | 318 | 19 | - | – | |
MobiDBLite | 325 | 340 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi4g1v0230000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…