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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230000 |
| Transcript ID | LotjaGi4g1v0230000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54011912..54015498) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGCAAGAGCGAAATGGTTATGGAGGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAA GAAGAAGAGAGTCACCTACTTCTACGAACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACC GGATGCGTATGGCCCACAATCTCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGC CCTGACGACATCCGCCGCTTCCACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCC AATCTTCGCCCGCCAGCTTAAGCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGG CCTCCGCCGGTGGCTCCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGC ATGCATCATGCTAAGAAGTGTGAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAA AGTTCATAGGGTAATCCTCTTTTTCACAGCGATTTTGTTTACTTTTCTGCTTGTGATGCATAGTTTATTGCCTTGTGGAT TATAGACCTAGGCTCTGTTTTTTTAAATTTATGTTGTTGAATTGTAGTTTGCAAACCAGGGTTTAACCCTAATTGAATTT CTTCCCATTTATACTCCCAGCCACCCAAAATCATGTTCAATCTGGAATGAATTTGCCAAACATGTTAATGCTGTTGTAAA AATTGCCAGATATATACTTTGGGACCCCTTGGCAAGGAATTAAGCTTGGCACAAGAGAAAGAAAAGGCATCTTCACAAGC CCCAGTTTCTGGGGTGTCTTGTGTTCCTAGCCGGGCACCCATGATACTTCATTGACCTAGGGATTAAGTTCTCTACCACA GCTGTACCACCACACCAGTATTGTCAAATAGCCGACATAGCGGCGCTTTAGGGTAGTGCTCTGCCATTATCCGCTATTGT CCACTCAGAGGGCTTTCCATAGCGGATTTTTGGCTTTCTGCTATTTTCTGCGATATGTGATCAACAACATTTTACCACTC CAATACTATTATCAGGTGGTTTTGGTGGCGGATGTTTGTTCGTCCCCATCTTCTTCTTTGCTAACTTTGTCACCCTGGCT GCTACACGAGCCTTCATGTGCTTCGAACATAATTCTTGGCATGAGGAACCATCCACAATGACACCATCGTACGGGAGTGG CAGCCTTAGTGAGAGATGGAGCGGTAGGTTCCCATAGTAGTTAGTAGTTTAGTCAGTGGAAGCACACATGGAAAGGAGGA GAGGACAAATCAGAGACTGAATTTCAAATTGACTCTGATTGGCGTAGTGGGTGAGGTCCATATTTCTCCAATCAGCTTCG AGCCCTAACTGGTGACCTCGGCTTTATCCGGATTCCGGTGTGTCTTTTGCACCTTCAGTATATGGAAAACTGATGATAAC TTACCTTCTCCTTGAGGACAAGGTGAATGTTCAGGGGCAGATTAATAGTTTAGTTAGTTTATTGACAGAGATAGGTAGAG TATAGGGGAGGGAGTATTATTAATAATAGAAAGTTGAGGAGGATTATCATCTTTGGGATAATTGTAATTGACAATTAGGG AGTGGTGTTGCGGAATTACTCAGCAAACCAAATCATAGTTTCAATTGATATTCTTGAATAACATCAGTTCTGTTCTTCTG CATTGGCTGGTTCCTCTCAACATAATCCTTGCCACATCTTTTTTGGCTCAAGTCCTTTAACAGTGCACATTTGTCCTTTT CAATTTTTCATAGTTCTGTGTGAAAATCAAATTTATGTTTCTGCTTACTATTACTTGTATTGTGAGTTCTTCTTTTGTTC TGCATGTCATGTGTTTTCTTCCTTTCATATATTTATTGTTCTCACTATCTGTTCTATATGACTTGGCAGCGTGTGCTGTA CATTGACATAGATGTTCACCATGGTGATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTATCTTTCC ATAAGTTTGGGGACTTTTTCCCCGGCACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCTCTCAAT GTCCCATTAAATGATGGAATGGATGATGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTA TCAGCCCGAAGCGGTTGTTCTTCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGA AAGGTCATGCAGATTGCCTTCGTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATT CGGAATGTGGCTCGTTGTTGGTGTTATGAGGTCTCTTTCTTTCTGTTCTTGGGCAGGACTAAATGTGATTTGGTATTAGT TTTAACGTTTCTTATTTGATCACATACTGTTTACTTGTTTTAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGC TGCCTTACAATGAATACTATGAGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAAC ACACCCAAGGATTTGGAAAGAATAAGGTGCTTTTACTATTAATTTCTTTTTGTTTGGATTAGAATTGTTTATTCTGATCT CCTTATTTATTTATTTATTTATTATAATTATGGTATAAATTAACAGTCATAAGTAGCTACGAATGTAATTATTGAAATGG ATTGTATTTTGTTGCTTACTCAAATGCATTATGTTGCAGCCAAGTCTCATCAGTCATCCCTTCTGTGATCGATGATATTT TCAGAATACTATGAATAATTGCATAAACAATCTATAGTTTATATCTGGCATTGTTGTTTCATGTTGATTGTGAGGACATT GTATTGTCTGAGATAATCCTTCTTTGTGGGCGAAGGGGGGAGTTTGCTATTTAATGTACTTAAAATACAGATAGTCCTTT AGATGGAAAGGAAGGTCTCTGGTACTGAATGCTGTTCTGTTCTGTCCAACATGGAGCTTCATATGTATGGTCTTATTTTT TAATTGAGGGATTTTATGTTCATTCTCATATCATGTGTCACTTTTGCGGCTGAATATAACTGCTACATTTCCCTTGGAGC CAGCACTGGCTAAATGGATTCTTTTTTACTTTATTTCTAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCT CCCAGTGCACCTTTTCAGACAACACCATCAACCACAGAAGTGCCAGAGGAGGTAGGTACTTAGTGACAGTCGCAGTTATT GTCTTCCTGTTTTTCTCTTGTTTTTGTTTGATTTATTAAGTATGGATTCAGGAGGAAGAGGGCATGGATAGAAGACCACA GTGTCGCAAGTGGAATGGTGAAGAGTATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAA CTGACCATATGAGGTAATGGTTATATATTGTTTGGAATCTGAATAAAAAATCCATTTAGTTTATTAG
CDS sequence (LotjaGi4g1v0230000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATGGAGGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAAGAAGAAGAGAGTCAC CTACTTCTACGAACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGGATGCGTATGGCCC ACAATCTCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGCCCTGACGACATCCGC CGCTTCCACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCCAATCTTCGCCCGCCA GCTTAAGCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGGCCTCCGCCGGTGGCT CCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGCATGCATCATGCTAAG AAGTGTGAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAAAGTTCATAGGCGTGT GCTGTACATTGACATAGATGTTCACCATGGTGATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTAT CTTTCCATAAGTTTGGGGACTTTTTCCCCGGCACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCT CTCAATGTCCCATTAAATGATGGAATGGATGATGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGA GGTTTATCAGCCCGAAGCGGTTGTTCTTCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGT CTGTGAAAGGTCATGCAGATTGCCTTCGTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATAT ACGATTCGGAATGTGGCTCGTTGTTGGTGTTATGAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTA CAATGAATACTATGAGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCA AGGATTTGGAAAGAATAAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACA ACACCATCAACCACAGAAGTGCCAGAGGAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGA AGAGTATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAA
Protein sequence (LotjaGi4g1v0230000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMEEERKIEEGASLPSGPDAKKKRVTYFYEPSIGDYYYGQGHPMKPHRMRMAHNLIVHYSLHRRMEINRPFPAGPDDIR RFHSDDYVEFLASVTPETLSEPIFARQLKRFNVGEDCPIFDGLFNYCQASAGGSLGAAVKLNRGEADIAINWAGGMHHAK KCEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKHYA LNVPLNDGMDDENFRVLFQAVIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFVKSFNVPLMIVGGGGY TIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSNMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQT TPSTTEVPEEEEEGMDRRPQCRKWNGEEYDSDFDEDEKDDLKHSKLTDHMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 5 | 451 | 447 | 1.9E-207 | ||
| PANTHER | 11 | 443 | 433 | 3.5E-269 | – | |
| PANTHER | 11 | 443 | 433 | 3.5E-269 | – | |
| Gene3D | 22 | 397 | 376 | 7.2E-160 | ||
| SUPERFAMILY | 25 | 389 | 365 | 1.92E-126 | ||
| CDD | 29 | 336 | 308 | 0.0 | – | |
| Pfam | 43 | 334 | 292 | 1.0E-84 | ||
| PRINTS | 45 | 62 | 18 | 5.6E-60 | ||
| PRINTS | 78 | 96 | 19 | 5.6E-60 | ||
| PRINTS | 111 | 128 | 18 | 5.6E-60 | ||
| PRINTS | 132 | 152 | 21 | 5.6E-60 | ||
| PRINTS | 154 | 177 | 24 | 9.6E-24 | ||
| PRINTS | 173 | 189 | 17 | 5.6E-60 | ||
| PRINTS | 186 | 201 | 16 | 9.6E-24 | ||
| PRINTS | 232 | 245 | 14 | 5.6E-60 | ||
| PRINTS | 249 | 267 | 19 | 5.6E-60 | ||
| PRINTS | 271 | 281 | 11 | 9.6E-24 | ||
| MobiDBLite | 390 | 451 | 62 | - | – | |
| MobiDBLite | 411 | 429 | 19 | - | – | |
| MobiDBLite | 436 | 451 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi4g1v0230000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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