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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230000 |
| Transcript ID | LotjaGi4g1v0230000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|P56519|HDAC2_CHICK Histone deacetylase 2; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54011938..54015514) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGAGAGAAAGATAGAGGAAGGTGCTTCCCTTCCATCGGGACCAGACGCGAAGAAGAAGAGAGTCACCTACTTCTACG AACCATCGATCGGCGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGGATGCGTATGGCCCACAATCTCATC GTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCCTTCCCCGCCGGCCCTGACGACATCCGCCGCTTCCACTC CGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGACTCTCTCGGAGCCAATCTTCGCCCGCCAGCTTAAGCGCT TCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTCAATTACTGCCAGGCCTCCGCCGGTGGCTCCCTCGGCGCC GCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAATTGGGCTGGGGGCATGCATCATGCTAAGAAGTGTGAAGC TTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCCTCGAGCTTCTCAAAGTTCATAGGGTAATCCTCTTTTTCA CAGCGATTTTGTTTACTTTTCTGCTTGTGATGCATAGTTTATTGCCTTGTGGATTATAGACCTAGGCTCTGTTTTTTTAA ATTTATGTTGTTGAATTGTAGTTTGCAAACCAGGGTTTAACCCTAATTGAATTTCTTCCCATTTATACTCCCAGCCACCC AAAATCATGTTCAATCTGGAATGAATTTGCCAAACATGTTAATGCTGTTGTAAAAATTGCCAGATATATACTTTGGGACC CCTTGGCAAGGAATTAAGCTTGGCACAAGAGAAAGAAAAGGCATCTTCACAAGCCCCAGTTTCTGGGGTGTCTTGTGTTC CTAGCCGGGCACCCATGATACTTCATTGACCTAGGGATTAAGTTCTCTACCACAGCTGTACCACCACACCAGTATTGTCA AATAGCCGACATAGCGGCGCTTTAGGGTAGTGCTCTGCCATTATCCGCTATTGTCCACTCAGAGGGCTTTCCATAGCGGA TTTTTGGCTTTCTGCTATTTTCTGCGATATGTGATCAACAACATTTTACCACTCCAATACTATTATCAGGTGGTTTTGGT GGCGGATGTTTGTTCGTCCCCATCTTCTTCTTTGCTAACTTTGTCACCCTGGCTGCTACACGAGCCTTCATGTGCTTCGA ACATAATTCTTGGCATGAGGAACCATCCACAATGACACCATCGTACGGGAGTGGCAGCCTTAGTGAGAGATGGAGCGGTA GGTTCCCATAGTAGTTAGTAGTTTAGTCAGTGGAAGCACACATGGAAAGGAGGAGAGGACAAATCAGAGACTGAATTTCA AATTGACTCTGATTGGCGTAGTGGGTGAGGTCCATATTTCTCCAATCAGCTTCGAGCCCTAACTGGTGACCTCGGCTTTA TCCGGATTCCGGTGTGTCTTTTGCACCTTCAGTATATGGAAAACTGATGATAACTTACCTTCTCCTTGAGGACAAGGTGA ATGTTCAGGGGCAGATTAATAGTTTAGTTAGTTTATTGACAGAGATAGGTAGAGTATAGGGGAGGGAGTATTATTAATAA TAGAAAGTTGAGGAGGATTATCATCTTTGGGATAATTGTAATTGACAATTAGGGAGTGGTGTTGCGGAATTACTCAGCAA ACCAAATCATAGTTTCAATTGATATTCTTGAATAACATCAGTTCTGTTCTTCTGCATTGGCTGGTTCCTCTCAACATAAT CCTTGCCACATCTTTTTTGGCTCAAGTCCTTTAACAGTGCACATTTGTCCTTTTCAATTTTTCATAGTTCTGTGTGAAAA TCAAATTTATGTTTCTGCTTACTATTACTTGTATTGTGAGTTCTTCTTTTGTTCTGCATGTCATGTGTTTTCTTCCTTTC ATATATTTATTGTTCTCACTATCTGTTCTATATGACTTGGCAGCGTGTGCTGTACATTGACATAGATGTTCACCATGGTG ATGGTGTGGAAGAGGCCTTCTACACAACTGATAGAGTGATGACAGTATCTTTCCATAAGTTTGGGGACTTTTTCCCCGGC ACTGGACACATCAAGGACATTGGAGTGGGCTCAGGAAAGCATTATGCTCTCAATGTCCCATTAAATGATGGAATGGATGA TGAAAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTATCAGCCCGAAGCGGTTGTTCTTCAAT GTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTC GTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATTCGGAATGTGGCTCGTTGTTGGTGTTA TGAGGTCTCTTTCTTTCTGTTCTTGGGCAGGACTAAATGTGATTTGGTATTAGTTTTAACGTTTCTTATTTGATCACATA CTGTTTACTTGTTTTAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTACAATGAATACTATGAGTAT TTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAGAATAAG GTGCTTTTACTATTAATTTCTTTTTGTTTGGATTAGAATTGTTTATTCTGATCTCCTTATTTATTTATTTATTTATTATA ATTATGGTATAAATTAACAGTCATAAGTAGCTACGAATGTAATTATTGAAATGGATTGTATTTTGTTGCTTACTCAAATG CATTATGTTGCAGCCAAGTCTCATCAGTCATCCCTTCTGTGATCGATGATATTTTCAGAATACTATGAATAATTGCATAA ACAATCTATAGTTTATATCTGGCATTGTTGTTTCATGTTGATTGTGAGGACATTGTATTGTCTGAGATAATCCTTCTTTG TGGGCGAAGGGGGGAGTTTGCTATTTAATGTACTTAAAATACAGATAGTCCTTTAGATGGAAAGGAAGGTCTCTGGTACT GAATGCTGTTCTGTTCTGTCCAACATGGAGCTTCATATGTATGGTCTTATTTTTTAATTGAGGGATTTTATGTTCATTCT CATATCATGTGTCACTTTTGCGGCTGAATATAACTGCTACATTTCCCTTGGAGCCAGCACTGGCTAAATGGATTCTTTTT TACTTTATTTCTAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACC ATCAACCACAGAAGTGCCAGAGGAGGTAGGTACTTAGTGACAGTCGCAGTTATTGTCTTCCTGTTTTTCTCTTGTTTTTG TTTGATTTATTAAGTATGGATTCAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGAAGAGT ATGATTCTGATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAATGGTTATAT ATTGTTTGGAATCTGAATAAAAAATCCATTTAGTTTATTAGTCCCTTTATTCAGTAG
CDS sequence (LotjaGi4g1v0230000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCCCACCGGATGCGTATGGCCCACAATCTCATCGTCCATTACTCCCTCCACCGCCGCATGGAGATCAATCGCCC CTTCCCCGCCGGCCCTGACGACATCCGCCGCTTCCACTCCGACGACTACGTCGAGTTTCTTGCCTCTGTCACCCCTGAGA CTCTCTCGGAGCCAATCTTCGCCCGCCAGCTTAAGCGCTTCAACGTTGGTGAGGATTGTCCTATTTTTGATGGTCTTTTC AATTACTGCCAGGCCTCCGCCGGTGGCTCCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAGGCTGACATTGCTATCAA TTGGGCTGGGGGCATGCATCATGCTAAGAAGTGTGAAGCTTCTGGCTTCTGTTATGTCAATGACATTGTGCTTGGTATCC TCGAGCTTCTCAAAGTTCATAGGAATTTCCGTGTTCTGTTTCAAGCTGTCATTCAAAAAGTCATGGAGGTTTATCAGCCC GAAGCGGTTGTTCTTCAATGTGGAGCTGATTCCTTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCA TGCAGATTGCCTTCGTTTCGTTAAATCTTTCAATGTTCCTCTAATGATTGTTGGTGGCGGAGGATATACGATTCGGAATG TGGCTCGTTGTTGGTGTTATGAGACTGCAGTAGCAGTAGGAGTGGAGCCTGATAACAAGCTGCCTTACAATGAATACTAT GAGTATTTTGGCCCAGATTATACTCTCCATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATTTGGAAAG AATAAGGAACACTTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACCATCAACCA CAGAAGTGCCAGAGGAGGAGGAAGAGGGCATGGATAGAAGACCACAGTGTCGCAAGTGGAATGGTGAAGAGTATGATTCT GATTTTGATGAAGATGAAAAGGATGACCTCAAGCACTCAAAATTAACTGACCATATGAGGTAA
Protein sequence (LotjaGi4g1v0230000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPHRMRMAHNLIVHYSLHRRMEINRPFPAGPDDIRRFHSDDYVEFLASVTPETLSEPIFARQLKRFNVGEDCPIFDGLF NYCQASAGGSLGAAVKLNRGEADIAINWAGGMHHAKKCEASGFCYVNDIVLGILELLKVHRNFRVLFQAVIQKVMEVYQP EAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFVKSFNVPLMIVGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYY EYFGPDYTLHVDPSNMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRPQCRKWNGEEYDS DFDEDEKDDLKHSKLTDHMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 143 | 143 | 5.5E-53 | ||
| PIRSF | 1 | 146 | 146 | 1.0E-66 | ||
| PANTHER | 1 | 142 | 142 | 4.2E-194 | – | |
| PRINTS | 1 | 18 | 18 | 3.1E-41 | ||
| SUPERFAMILY | 1 | 278 | 278 | 1.34E-79 | ||
| PANTHER | 1 | 142 | 142 | 4.2E-194 | – | |
| Pfam | 2 | 146 | 145 | 9.1E-28 | ||
| PRINTS | 34 | 52 | 19 | 3.1E-41 | ||
| PRINTS | 67 | 84 | 18 | 3.1E-41 | ||
| PRINTS | 88 | 108 | 21 | 3.1E-41 | ||
| PRINTS | 129 | 145 | 17 | 3.1E-41 | ||
| PIRSF | 141 | 340 | 200 | 1.4E-70 | ||
| PANTHER | 142 | 332 | 191 | 4.2E-194 | – | |
| PANTHER | 142 | 332 | 191 | 4.2E-194 | – | |
| Gene3D | 144 | 286 | 143 | 1.1E-49 | ||
| MobiDBLite | 279 | 340 | 62 | - | – | |
| MobiDBLite | 300 | 318 | 19 | - | – | |
| MobiDBLite | 325 | 340 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi4g1v0230000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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