Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0313500.1

Overview

Field Value
Gene ID LotjaGi4g1v0313500
Transcript ID LotjaGi4g1v0313500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Novel plant snare, putative; TAIR: AT3G17440.1 Putative plant snare 13; Swiss-Prot: sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:69030869..69036936) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATAAAAAATAAAAAATTGTTACTATGTGACAACGATTCTCTCTCTTGTCTCTTACATCGTCCAGCACAGGTTTCTG TTGTGTTTTTCGGTGTTAAGGTTGTGTGTTGTGTGTTGTTGTTGTTTTCCTTTTCAGTTTTTCTTTCATTCTCTCACTTC CAAGCAATGCAATCACATTCTCATTGATCCAAACCCTGCAACATTCTCATTCATTCTACATCACCATCATAATTATGCCT TGTCTTCATCCTCTGTCCACCACCTAGGGTTTCTCTCCGATTTCCATTTCTTTTTGTGCCGGGATTTTGGGGGCAGACAT AATCTCCGGCAGCCATGGCCACCAACTTGCAGATGACCCCTCAGCTCGAACAGATCCACGGTGAAATTCGCGACCACTTT CGAGCCCTCGCGTAAGCATCATCATCATCATCTCTTTTTCTATATTTTACCGTGTTTGATTCATCCTATCTATGCATTGT GCTGGATTCTGCTTACAAAGGAATTGCAAAATTTAAGGTGTGAGTAATCATACCACTATCGAGCGATCGTGAATTATTGA TTGTTGACATTTGGGGAATACCCTAATTTTGGTCAATTTGAGGGGTTGATTACACGGTGAATTCCTATAAAATTTTCAAT AATTTCAGACTTGGTGTGTTGTTTGGTCTTTAGGTTTAGTGATTTTTTGAAAATTCAGGTATGTTGTGGTTTCTGTGGGG GGATTGTAGTTGGTGAAGTGATTGTGTGGCTTTGGAGGAAATGGGGTGGTACTAGGAGCGTAGTAGTGTGCAACCACATG AATGCTTGTCTCTGGTGCTGCTTGTTTGTGTAAGAAGGCTCAGAGTAAACAGTTTTAGTTGCTTCTAGTTTGGATTATAC TTGAGAGACTGAGGCCTAGTTTGGATTAGCTTCTAGTTCATGGAGCTTCTTAATTGTGATAAGTACCTGATTTCTACCTT GCAAGAAGTCCTTGTAAGGTGATAGGTGCTTATGGAGAAGTTGGATGAGGGAGCTCATGAAAAAGTTGAGGACTTGAGGA AATAGGATGGTACTAGGAGGGTGATAGTCCAAGTGTGCAACCACAAGAATGCTTATCTCTGGTGCCGCTTGTTTGTGTAT GAAGGCTAAGACTAACCAGTTTTAATTGTTACTAGTTTGTATTAGACTTGAAAGACTAAGGCCTAGTTTGGATTAGCTTC TTGCAAAAAGTCCTTGCAAGGTTATAGGTGCTTATGGAGAAGTTGGATGAGGGAGCTCATGAAAAAGTTGAGGACTTGAG GAAATAGGATGGTACTAGGAGGGTGATAGTCCAAGTGTGCAACCACAAGAATGCTTATCTCTGGTGCCGCTTGTTTGTGT ATGAAGGCTAAGACTAACCAGTTTTAATTGTTACTAGTTTGTATTAGACTTGAAAGACTAAGGCCTAGTTTGGATTAGCT TCTTGCAAAAAGTCCTTGCAAGGTTATAGGTGCTTATGGAGAAGTTGGATGAGGGAGTTCATGAAAAAGTCAAGGACTTG AGGTGTCTAAGCTAATTTCAGTTTATGCATGAAGTTGTTGCTTAGAAGTCTCACATTTTGTCAGATCATTTTAACTTTTT TCCATATTAGTAGTTCAAAAGTTGATCCAAACTGGCCCTAGATGTTGCAGCTTGCTAGTTGAAAGTATTAAAATTTTGTA AGTATAGCCAGGCTTAGAATTGTTTGCATGGTTATGTTTGCCTTTCCTCAACCAAAGCATCACTCACATGTCAGAATAAT TGTTCTTCACGAACCTTTAGAGCATGGTCCTGCATTGATCTCGGCAATTGCATGTCCTTATTCTACAGTCTGAACATTGA TCTTCTTGGAATTAGACATACTTTGTGGTATAGTCTTGCATTTTCTTTTTTCACTTTCAATAGTTATGTAAGATTACAGG ATGTCTGTAATGTGTGTGTCCAGAATGAAGTTAATCCTGATTGAATTATATTTTTCCATCACGGGGATGTTGTTTATATG AGGGCTCATCTATATTCTGCAAAAAAAAATTCATCTGAAATTTAAGGCATAGTGGGACTCAGTTGCTAGTGCCAACATTG CATATGTTTATTTACTACTACATAGTACATACAAGTGATTTACGGTTTACTTGCACTTAGAAATTCCTCGTTTTGACTTG TAATAATATATCCTTAGCTGGTGCCACATTCACACTTAGCAATTCCTGGAGAAGGAAAAGAAGGAGAAAAAGCTTACCTT CTTTATCTCCAAATAGGTCCCATAATTTAAGCATATGTAGATACATGTTAGTTTGTGGATGATCTGTAATATGTTAATTA ATTTATTTTTAATATATTCACCTTTTGCATCCAGAAATGGCTTTCAGAAGCTGGATAAGATTAAAGATTCCAACAGACAA AGTACTCAGCTGGAAGAACTAACAGGGAAGATGAGGGAGTGCAAAAGGTAAGTCGAGCATCTATGCAGTTGTAATCTTGA TATCTCTTTATGAAAGCTGTATCTCTCAGAATGAGGTCCAAAACAGAAAAACTCCGAAGGAAGGAAAATGTTTTAAATGC ATATTCTGAAAATATCAACTTCTGCAGTTTTTTTTTCCTCATTTGTTGGCAGGATGAAAATTCTGTTTTGCAATGGAATT GACATCTCATGTCAACTTCTCAGGGTTTGAATGATGATCATGTGAGAAACATGGAATCCTGTTCTAAATTGAAATTTTTT ATGTTTAATGATTCTGAGTTATTTTCTTGTTTATCGTACTAGTTCTATGCTTTAACCGGTAGAGTTGCCTTTTTCTACAT GCCAAGTGCTGAAAGAAGTGCAATTTCATGTGATTTTTTAGTTTCGACATGTTTCCTATTTTCCTTTTGGAGTGTGTTAC TTACTGGCATTCTCGGAATATGGAACATTATGTTTTTATTGATGGTTTCAGGTTGATAAAAGAGTTTGATCGTGAAATTA AAGATGAAGAGGGAAGAAATCCCCCAGAAGTGAGCAAGCAACTCAATGACGAAAAGCAATCAATGGTCAGTACCCAGAAC CCTTCCTTTTTCTTGTTCATGTTGGAAATCTAGTATCTACGAGGAGGTCTTCCTTTCCAGCTCTTCTTTTTTCATGTGTT ACAACTTTATAAACAATTTGCAAGCAATGCCAATTGCCAAGTACTTCCTTGGTATTGTCAAGACATCAAATAAAATGATC TCAATCTGATCAGAAAAAAAAGTTTGAGTGTCTGAGTATTGTGCATATGTTTATTATACAGTACATGCCCATACAACACA AACAGCCAACTCCATGTTTTCTAACATTCTTTTTTTTTTTCTTGCAGATCAAGGAGCTAAATTCATACGTCGCATTAAGA AAAACGTAAGCTGACCTGTATATACTTCCATTTGTGTTATTAGACTTCAATATATTGAAGGTTTAGTAGCAAATGAGAAG ATTAATACCAATTTTCTTTTGGGCGCTTATAAAAAAAAAATCTTTTGGGCATGTTCAACTTTAAAGTCAAGAATTCATGA TAAATATTTATTCCAGTCTGTTATAGTTTTTCTTCTCATAAATGAAATTTTATCCTTTGGGCTATTTTAAATGATTCATA CTTTCATGTGGTTGATAAACAGGTACATGAATACCATTGGTAATAAAAAACTTGAACTGTTTGACACCGGAGCAGGAGCA AGTGAACCTACAGCTGAAGAAAATGTCCAACTGGCATCAGGTAAAATATTCAATGGAATTTACAGTCGATACCAATGAAA TAAAATCAGCACTTTGCCATATAAGTTGAAATCATTTTCACTGTATATTTGTGTTTCTGTTTTTTGACCAGTCTCCGTAT AAAATCTGTGCATTGTGTTTGGGTGCTAATTTATGCAATGGCATAGTTCAGGCTTTCATCTTTATATGTGCATCATTTTT GGGGCATTCTTTGTGTGTTTTATGTTCTTATTGGTAGCACTATATTTATCTCAGCAATAATGCTTATTTGGCTTGTCCTA TAGAAATGTCAAATCAAGAACTTGTCAATGCTGGGATGAAAACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAG CAGGTGAGTCACTTCAGACTTATGCCCCCATCAATTTTCCTTTGGACCTTTGTTCTTACCCATATCAAAATGTAGGTTGT ACATCAAACAGTTGAAGTGGGCACCCAAACTGCTGGTACCTTGAAAGGCCAAGTAAGTTTGATTCTCCTTGAGTATGCTC TCTGAAGAGAAGAGTACAAGGATTTACTAGTTTAACCTCTTTCTTTTATTCAAATTATGCAGACTGAACAAATGGGCCGT ATTGTTAACGAGCTTGATTCGATCCAGTTCTCAATTAAGAAGGCCTCCCAACTCGTTAAGGAGATTGGTAGACAGGTTGC TTCATTTTCATTGCTTCTAGTCACCATTTACATTCCATTAAACCTGTGTCATTGAACTAAATTGTCTTTCCCCCTGTTCT CAGGTAGCTACGGACAAGTGTATCATGCTTTTTCTGTTCCTTATCGTCTGTGGTGTAGTTGCCATTATTGTCGTGAAGGT ATCATGTTAAAATTCATCTACTGATTCAGCGAATTTGTTCTAGATATCTATTCCTCCTTCAAGTAATGACATTTTTTATA AAAATAAATTAAAATTAATACAACATGCTCCAAGAATTAGTTTGACATAATTTTATTTAGATGAACTATTTTAAATAACT TACTTTGGTAATACATTATACAACACTGAAAAAAAAAAGGCAAGGACTTGAATTGCAAGTAAGTGTCTTTTGAAATGTTA ATGAGCATTGTCTTACCATCAGATGTTTTCATGTGCGTTATTAAGGATGTTTTTGGGTAAGGTAAACAACTTAATTAAGT GGTTATTCATAAGTTAAGCTTATTGAGATAAGCTTAAAACGTGTTATAGATAGGAATAAGAACTTATTCATAAGTTAATT TGAGTAGCTTATGAAAATAAGCTCGAGACAGCTTATAGGTAGATCACATAAGTTCTTCCAAACACTTGCATACGCTATTA TGCTATAAGATAAACTCAAAGAAGCTCTTCAAGTAGAGCCTAAAAGTTTCATTTTCGTTATCATTGCTGACACTATCCTT CTATTTGAATTGGAAATATTTTTTTCTTCAGATTGTGAATCCCAACAACAAAGATATCAAGGATATTCCAGGGTTGGCGC CTCCAGCTCCCACTAGGAGGCTTTTGTATGTAAGGACTGGAGAACAATTTGATTAATTCTTATATTGAAACAAGAGTTTT CTCCATGCTAGTCCTGCCAACTTGATTCTTGTTCTTCTTGTCGATGGAAAAGTTAAAGGATTGCTGTTGGGGGGCATCAT TTTGGTCTCCAATTATTATTTTTTTACAAAAAATTCTTCCATGTACTGTTTGTGATTCTATGTAAATCTCACGAGAGCCT TTCTGCTTTGCTTTGAGTGCCATGTTTATTTATGTAACATTCCAAAAAATGTAGGGCTAGGAAGTAATCCTTTACTGTGT AATTGGTGGTGTATATGTCTAATACCAAAGGAGATTGCCCCCCCTCCCCAATTTTTTTGATTTGTTAATCCACGCATATA TATTCTGAACTGTCGGCTGGATCTGTTTGTAAATTTCATTTATTTTATAGGATGTTTGTCCTGTTTGTGGAAATCTGAAT TGATTTAGCTTCAAAATCAAGCTACAAAACCTAGTTTTGATGGACACAAAAATAGTTGGATTTTACAGATGAATTTCTCA ATATTATTTTACGAAAATCACTTTTTTCCATTAATGTGCGTAAACATAAATCATAAATCAATTCACACTTCCAATTTACT TTGACCATAGTTAATTTGATCAAAATTTATTTATTGAAAATCGATTTTGACGTGCTGATATAAACACACATTAAAGTTGT TGCAGCTGTTATCTTTAATCTCTTTACCTGGTCCTTCAATTCATAGATAGGGATGGTTTGTGTGTTGCTACTCATGTTCT GGTTCTAGTCATGTATTGTTAGGAATAGGTCAATATTCCCTTTCTATGTTTTTCTGTGGTATCTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0313500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCAACTTGCAGATGACCCCTCAGCTCGAACAGATCCACGGTGAAATTCGCGACCACTTTCGAGCCCTCGCAAA TGGCTTTCAGAAGCTGGATAAGATTAAAGATTCCAACAGACAAAGTACTCAGCTGGAAGAACTAACAGGGAAGATGAGGG AGTGCAAAAGGTTGATAAAAGAGTTTGATCGTGAAATTAAAGATGAAGAGGGAAGAAATCCCCCAGAAGTGAGCAAGCAA CTCAATGACGAAAAGCAATCAATGATCAAGGAGCTAAATTCATACGTCGCATTAAGAAAAACGTACATGAATACCATTGG TAATAAAAAACTTGAACTGTTTGACACCGGAGCAGGAGCAAGTGAACCTACAGCTGAAGAAAATGTCCAACTGGCATCAG AAATGTCAAATCAAGAACTTGTCAATGCTGGGATGAAAACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAG GTTGTACATCAAACAGTTGAAGTGGGCACCCAAACTGCTGGTACCTTGAAAGGCCAAACTGAACAAATGGGCCGTATTGT TAACGAGCTTGATTCGATCCAGTTCTCAATTAAGAAGGCCTCCCAACTCGTTAAGGAGATTGGTAGACAGGTAGCTACGG ACAAGTGTATCATGCTTTTTCTGTTCCTTATCGTCTGTGGTGTAGTTGCCATTATTGTCGTGAAGATTGTGAATCCCAAC AACAAAGATATCAAGGATATTCCAGGGTTGGCGCCTCCAGCTCCCACTAGGAGGCTTTTGTATGTAAGGACTGGAGAACA ATTTGATTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0313500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIKEFDREIKDEEGRNPPEVSKQ LNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGASEPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQ VVHQTVEVGTQTAGTLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPN NKDIKDIPGLAPPAPTRRLLYVRTGEQFD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21230
1 246 246 1.7E-125 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 216 216 - –
PANTHER
PTHR21230:SF35
1 246 246 1.7E-125 –
Coils
Coil
45 72 28 - –
SUPERFAMILY
SSF58038
134 208 75 1.22E-16 –
Gene3D
G3DSA:1.20.5.110
136 215 80 2.0E-16 –
SMART
SM00397
140 207 68 5.4E-6
IPR000727
CDD
cd15861
144 206 63 2.52927E-17 –
ProSiteProfiles
PS50192
145 207 63 10.43
IPR000727
Pfam
PF03908
153 232 80 2.0E-7
IPR005606
TMHMM
TMhelix
217 239 23 - –
Phobius
TRANSMEMBRANE
217 237 21 - –
Phobius
CYTOPLASMIC_DOMAIN
238 269 32 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005484
Molecular function SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
Subterm of
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0313500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…