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PF03908

Source: Pfam

Description

Sec20

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005484
Molecular function SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
Subterm of
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of

Associated Lotus transcripts 10

Transcript Name Description Predicted domains Domain count
Lj0g3v0061899.1
– PREDICTED: novel plant SNARE 11-like [Fragaria vesca subsp]. vesca] gi|470128757|ref|XP_004300301.1|
Domains
14
Lj0g3v0190289.1
– PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1|
Domains
4
Lj3g3v1295850.1
– PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1|
Domains
8
Lj4g3v0071010.1
– PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1|
Domains
4
Lj4g3v2249070.1
– PREDICTED: novel plant SNARE 13-like [Glycine max] gi|356565471|ref|XP_003550963.1|
Domains
15
LotjaGi3g1v0184500.1
– Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0184500
Domains
8
LotjaGi4g1v0193400.1
– SNARE; TAIR: AT2G35190.1 Putative plant snare 11; Swiss-Prot: sp|Q944A9|NPS11_ARATH Novel plant SNARE 11; TrEMBL-Plants: tr|I1MV96|I1MV96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193400
Domains
15
LotjaGi4g1v0313500.1
– Novel plant snare, putative; TAIR: AT3G17440.1 Putative plant snare 13; Swiss-Prot: sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500
Domains
15
LotjaGi4g1v0313500.2
– SNARE; TAIR: AT1G48240.1 Putative plant snare 12; Swiss-Prot: sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500
Domains
14
LotjaGi6g1v0276900.1
– Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0276900
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 10.00