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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005606
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.298s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0061899.1
n.a. PREDICTED: novel plant SNARE 11-like [Fragaria vesca subsp]. vesca] gi|470128757|ref|XP_004300301.1| chr0 20782580 20787533 -
2 domain predictions
2 GO terms
Lj0g3v0190289.1
n.a. PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1| chr0 93043813 93045472 +
2 domain predictions
2 GO terms
Lj3g3v1295850.1
n.a. PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1| chr3 16582674 16587080 -
2 domain predictions
2 GO terms
Lj4g3v0071010.1
n.a. PREDICTED: vesicle transport protein SEC20-like isoform X1 [Cicer arietinum] gi|502079957|ref|XP_004486418.1| chr4 481065 483014 -
2 domain predictions
2 GO terms
Lj4g3v2249070.1
n.a. PREDICTED: novel plant SNARE 13-like [Glycine max] gi|356565471|ref|XP_003550963.1| chr4 30992902 30997841 +
2 domain predictions
2 GO terms
LotjaGi3g1v0184500.1
n.a. Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0184500 LjG1.1_chr3 25825838 25831002 -
3 domain predictions
2 GO terms
LotjaGi4g1v0193400.1
n.a. SNARE; TAIR: AT2G35190.1 Putative plant snare 11; Swiss-Prot: sp|Q944A9|NPS11_ARATH Novel plant SNARE 11; TrEMBL-Plants: tr|I1MV96|I1MV96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193400 LjG1.1_chr4 44475309 44482009 -
2 domain predictions
2 GO terms
LotjaGi4g1v0313500.1
n.a. Novel plant snare, putative; TAIR: AT3G17440.1 Putative plant snare 13; Swiss-Prot: sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500 LjG1.1_chr4 69030869 69036936 -
2 domain predictions
2 GO terms
LotjaGi4g1v0313500.2
n.a. SNARE; TAIR: AT1G48240.1 Putative plant snare 12; Swiss-Prot: sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500 LjG1.1_chr4 69032334 69032931 -
2 domain predictions
2 GO terms
LotjaGi6g1v0276900.1
n.a. Protein transport protein sec20; TAIR: AT3G24315.1 Sec20 family protein; Swiss-Prot: sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20; TrEMBL-Plants: tr|C6TKD1|C6TKD1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0276900 LjG1.1_chr6 59381445 59385565 -
3 domain predictions
2 GO terms