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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0393900 |
| Transcript ID | LotjaGi4g1v0393900.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma membrane ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|P22036|ATMB_SALTY Magnesium-transporting ATPase, P-type 1; TrEMBL-Plants: tr|A0A0R0JX32|A0A0R0JX32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77223131..77227958) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTAGGATTTCTGCGGCGCCTCATCTATGAAAGTATGCTTCAGAACCATAGCTTCTCTTTTCTACCCTCTTTCCTTCC ATTTTCTCCCTCTTATGTACTTCTCTCCAGATAGAAGTGTGTGTTTGCATAACTGGTGAATGTAACGTGAACGAACTTTC ATCTCAATACATAAGAAGAATATCGTTTATTTATTTATCTCGTAACTGTTTTCATTGCTTTCAACGGGTATCCAAACATA TATTTAGCAGTTACTATCATAGTATGTTTTTTTTATGTGGGTTGAGCTCAATTGCAGGGAAACCTGATGGGGGCTCACGA ACTGAAGAGGAAGAGAAAGTCTACTCTTGGCTATATACCTTGGCCCAGTCTGACAAAAACTTGGTCTTTGAGTATGTTAG GTCCACAGAAAGAGGCAAGTTTCTGTATTCTGCAGTACTTTTACAATTACACATTGATACCTTTCAAAATTTATGGACAC AAAATGTGGTCCTAAACGCATGTTTCATGTGCTACTGGCACTAAAAGCAAATGAATTTGAATCCTCTCTTGTGACACTAC ATTGTCACGATTAATAGCATGTTACGTTTGTTTCCACTGTGAAATTCTGTAGAATCAATTCTTGTTAGAAACAAGTCTTA ACGTGAGTTAACGTGTCTTCAATTATGTGCAATTCGTGAAGCCAAACATGTTATAAGATTGTGTATCTTTCTCTGTTAAC AATGTTCTTCAATTTCTGTGTAGGCTTAACATTCACTGAAGCTGAGAGCAGGCTGCAAGAAAATGGTCCAAACGTTCCAT TTGATTATTCTTTTCCAAGCTGGTGGCATTTTCTATGGAAAGCTCTTTTCCACGCTTTCAACATGATTCTCATTGTTTTA TCTGCTCTGTCATTCATCACCTGTGACTATCCAAATGGATCCATCATGCTCATATTGGTTTTCATCAGTGTCTCCCTCCG TTTCTATCAGGTATGACTATGAATTTCTACATTACTTGGTTCAATTGAATGAAGAAATATTTCTCTTCCCTTTCCCTCCT CTTATCTTGCACCTTTACCGTGGTTCATAGGAATATAGCAGCTCGAAAGCAGCTAAGAGGCTTTCAGAATTTTTGAGATG CCCGGTGCGAGTTCAAAGATGTGCCGGTAGAGTTGTGCAGACAGAATTGAAGGTTCAAGTTGATCACAGGGATGTAGTTC CTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCAGGGGATATCAGATTGTTATCTTCAACACATCTTGTTGTA AGGTATGTCAACTGAAAATCTGGTGGTTTTATTGATGATTTGAATATCAGATGGTGATTTGATACCTTTTTAACAGCCAG GCCTCATTAACTGGGGAGTCTTGGACAACGGAAAAAACTGCTGATGTTAGAGAAGATCACAGCACACCTTTACTAGATTT AAAGAACATCTGCTTTATGGTTAGTAATTCAAACCCCCTTCCTTGTTTTGTTTCAATGGAATAAGGTTTCAAATTGGAGT CGCGGCCGTGAATCTTGATACTGTGGAAAATTAAGGACACATGAGGCTGATGCGACTACCATCGCGATGCAGTCATGGAG ACAGTTAGGATTCAATTGCAAGATTTGTAACTTGAGTCCCACATTGGAAGTATGACATTCTAATGTGGGGTTTACAAGCC TTGGGCTCTCCAACAGTTGGCTTTTGTGGTATGGTTCTCGCCTTCTCGGAAGGTTTTTATCAATTGATATCGGTGCCTTC CACCATGTCTCTCGGCTGCAAACGAGCAGTGCGGGTGGTGATGTCTGCATTGCGGCGTTTGCTCGGCCCTAGTCAAAGGG CTATGTATGGTTCTCCCTGGGTTTTTATCAGAGACCTCCAAAATCATGAGCAATTTAAAACCATGCAATGAAAGTTATAT CTTCAGTTTAGAGTTACATCTCACAAAGTACCAAACAGATTCAGTTTATAATTTTGTAATTTTCCATACCTTTATGATAT TTTGGCCTTAAAACATATTGAATTCCCAAACAGATATTGTCAGCTTAATAACAGAGAACTTTTCTTGGAAGTGACTAGCT ATTATGAACATTGCAGGGTACAAACGTGGTATCAGGTACTGGAACAGGCTTAGTTATTTCAACTGGATCCAATACTTACT TGAGCACCATGTTTTCCAAGGTTGGGAAGAAGAAGCCACAAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTACATG CTTATTTCTGTTATGCTAGTGGTTGTTACAGTCATGTTTGTGACAGAATACACATCATCTCTTGATTTGAGCAAAAGTAT TCTCTTTGCGATCACAGTAGCATCTGCACTCAATCCTCAGATGCTACCCCTCATCATCAACACATGCCTTGCAAAAGGAG CCCTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGCTTAACAGCTATACGCGAGATGGGATCAATGTGAGTACAAATT CACATTAAAATCAACTGATTGATGATTTAGTGCATGTTTCGTAATTATTCTACAATTGATTCGAAAGTCAGAATCAATTC TGGTGAGAAACTTCTGTAAGTAGCTTCTGAGATCCATATAATTGATTCTGAGAAAAAGATCCTAGCATTCTATTATCTTG ATGCTTGGGTCTAAATTAGGAGCAAACTTCTAAATAGATATGCTAGAATCTAGTTTAACAATAACTGCATCATCAACAAT GAGAACTTAGGGTCCAAAAACTTGCAAGGCATGTGATGAGTGGTTTGTTTTGCTTCAAGTATGCATCTTTTTAGCAAACT CTTCTACTATGCACTTACATTTTATAGTGTTGCAGGGATATCCTTTGTATTGACAAGACAGGCACCCTCACAATGAATCA TGCAATCATGGTTAATCATCTTGACTGTAGAGGTTTACCCCAAGAAAAAGTTCTGCGCTTTGCTTTCCTTAGTTCTTACT TCAAGACTGATCATAATTTTCCTTTGGATGATGCAATCATGGCACATGTATATTCAAATGGATTCAGATTTCAACCATCC AAGTGGAGGAAGGTAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACATGCA CTCCCAGTTCTTTGGCAGGTACATGGTAACAAAAGGAGCATTGGAGGAAGTCATGAGAGTTTGTTCTTTTATTGAGAATT TTGATAAAGATGGAATTTCCACCTTCTCTTTAGATGACTACCAGAGGATTTTGAATCTGTCTGAAGAATTGAGCAATGAA GGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGGTGAGTCTTTTCCAAATTAATGTCTTCTTACCTTCTTT TCAACTTATCATTATTTTCTTTCTTTTCATGCCAATGACACTCACTTTGCATATCAGATAGCTTAACAAGATTAGGATCA CCTAAGCGGTTGTGCCATTTTGCTATGAACCAACCGTGCCTGAAGCTCAAGCTGTTTATATTTCCAACACATCCCTCACC CTTTTCGCACAAGAACTCATTAATCGAACTCTACATCAAGTAGTCATAACCAGCTATCCTAAAATCTGAAGTTGTTTGCT GAAGACGCGATAATTGTTATATATTATAACATGTCTCACTATCAATTTCAATTTATGTGACATGCAGCAGCAAACATGTG AAACAAGTAATGGAATCAGGAGAGGTTGTGAGGATTTTGAAAGAGACATGATGTTTCTTGGCCTGGTAACATTTTTTGAC CCACCAAAGGACTCAGCAAAGCAAGCACTGTTTCAGTTGGCCAAGATGGGAGTTCAAGCAAAGGTTCTAACCGGTGACTC TCTCAGTTTGGCAACAAGGGTATGCAGAGAAGTTGGAATCAAAACCACACATGTAATCACAGGGCCAGAGCTAGAGCAAC TAGACCAAGACACTTTCCATGAAACTGTCCAAACAGCCACAGTGCTAGCTCGCCTCACCCCGACTCAGAAACTAAGAGTG GTTCAATCCTTGCAGACAAATGGAAACCACATTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTTGCTCTTGATGC TGCCCATGTAAGCATTTCAGTGGACTCAGGTGTTGCAATTGCCAAAGACATGGCAGATATAATCTTACTAGAGAAAGATC TCAATGTGCTAGTTGCAGGAGTGGAGCATGGAAGACTCACATTTGGGAACACAATGAAGTATGTGAAGATGTCAGTGATT GCCAACTTGGGAAGTGTGATTTCACTCCTCATAGCATCACTTTTACTCAGGAATGAGCCTTTAACAGCTAGGCAGCTTCT CACTCAGAATTTCATATACAGTGTGGGACAAATTGCTATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTC ACAAATTTTCAGGGAAAGGGTTACCAATGTTCATATTGTGGAATGCACCTGTGTGCACTCTCTGTGATGTTGCAACACTC TTGTTTCTCTGGTTCTATTACAAGTCTTATGATGACTTGGAAGATAAATTCTTCCATTCAGCTTGGTTTATTGAGGGTCT TCTCATGCAGACACTCATCATCCATTTGATTAGGACAGAGAAAGTCCCTTTCATACAGGATGTTGCTTCTTGGCCAGTGA TTTGTTCCACTCTTGTGGTTTCTGCTATTGGAATTGCATTTCCATTCACACCCATTGGGAAGGTCATGGGATTCATTGTT TTACCTGTCTCATTTTTTGGGTTTTTGGTTGTTCTTTTTCTGGGATATTTCACTATTGGCCAGGTTGTTAAGAGACTTTA CATAATGGTTTATAAGAGATGGCTATGA
CDS sequence (LotjaGi4g1v0393900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAGAACCATAGCTTCTCTTTTCTACCCTCTTTCTCAATTGCAGGGAAACCTGATGGGGGCTCACGAACTGAAGA GGAAGAGAAAGTCTACTCTTGGCTATATACCTTGGCCCAGTCTGACAAAAACTTGGTCTTTGAGTATGTTAGGTCCACAG AAAGAGGCTTAACATTCACTGAAGCTGAGAGCAGGCTGCAAGAAAATGGTCCAAACGTTCCATTTGATTATTCTTTTCCA AGCTGGTGGCATTTTCTATGGAAAGCTCTTTTCCACGCTTTCAACATGATTCTCATTGTTTTATCTGCTCTGTCATTCAT CACCTGTGACTATCCAAATGGATCCATCATGCTCATATTGGTTTTCATCAGTGTCTCCCTCCGTTTCTATCAGGAATATA GCAGCTCGAAAGCAGCTAAGAGGCTTTCAGAATTTTTGAGATGCCCGGTGCGAGTTCAAAGATGTGCCGGTAGAGTTGTG CAGACAGAATTGAAGGTTCAAGTTGATCACAGGGATGTAGTTCCTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTT TCCAGGGGATATCAGCCAGGCCTCATTAACTGGGGAGTCTTGGACAACGGAAAAAACTGCTGATGTTAGAGAAGATCACA GCACACCTTTACTAGATTTAAAGAACATCTGCTTTATGGGTACAAACGTGGTATCAGGTACTGGAACAGGCTTAGTTATT TCAACTGGATCCAATACTTACTTGAGCACCATGTTTTCCAAGGTTGGGAAGAAGAAGCCACAAGATGACTTTGAAAAGGG TCTCAAATGGATATTTTACATGCTTATTTCTGTTATGCTAGTGGTTGTTACAGTCATGTTTGTGACAGAATACACATCAT CTCTTGATTTGAGCAAAAGTATTCTCTTTGCGATCACAGTAGCATCTGCACTCAATCCTCAGATGCTACCCCTCATCATC AACACATGCCTTGCAAAAGGAGCCCTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGCTTAACAGCTATACGCGAGAT GGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTCACAATGAATCATGCAATCATGGTTAATCATCTTGACT GTAGAGGTTTACCCCAAGAAAAAGTTCTGCGCTTTGCTTTCCTTAGTTCTTACTTCAAGACTGATCATAATTTTCCTTTG GATGATGCAATCATGGCACATGTATATTCAAATGGATTCAGATTTCAACCATCCAAGTGGAGGAAGGTAGATGAGATTCC TTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACATGCACTCCCAGTTCTTTGGCAGGTACATGG TAACAAAAGGAGCATTGGAGGAAGTCATGAGAGTTTGTTCTTTTATTGAGAATTTTGATAAAGATGGAATTTCCACCTTC TCTTTAGATGACTACCAGAGGATTTTGAATCTGTCTGAAGAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTAT AAGGAAGCTGGAAATGCAGCAAACATGTGAAACAAGTAATGGAATCAGGAGAGGTTGTGAGGATTTTGAAAGAGACATGA TGTTTCTTGGCCTGGTAACATTTTTTGACCCACCAAAGGACTCAGCAAAGCAAGCACTGTTTCAGTTGGCCAAGATGGGA GTTCAAGCAAAGGTTCTAACCGGTGACTCTCTCAGTTTGGCAACAAGGGTATGCAGAGAAGTTGGAATCAAAACCACACA TGTAATCACAGGGCCAGAGCTAGAGCAACTAGACCAAGACACTTTCCATGAAACTGTCCAAACAGCCACAGTGCTAGCTC GCCTCACCCCGACTCAGAAACTAAGAGTGGTTCAATCCTTGCAGACAAATGGAAACCACATTGTTGGGTTCTTAGGAGAT GGAGTGAATGATTCACTTGCTCTTGATGCTGCCCATGTAAGCATTTCAGTGGACTCAGGTGTTGCAATTGCCAAAGACAT GGCAGATATAATCTTACTAGAGAAAGATCTCAATGTGCTAGTTGCAGGAGTGGAGCATGGAAGACTCACATTTGGGAACA CAATGAAGTATGTGAAGATGTCAGTGATTGCCAACTTGGGAAGTGTGATTTCACTCCTCATAGCATCACTTTTACTCAGG AATGAGCCTTTAACAGCTAGGCAGCTTCTCACTCAGAATTTCATATACAGTGTGGGACAAATTGCTATCCCTTGGGACAA GATGGATGAAGAGTATGTGAAGACTCCTCACAAATTTTCAGGGAAAGGGTTACCAATGTTCATATTGTGGAATGCACCTG TGTGCACTCTCTGTGATGTTGCAACACTCTTGTTTCTCTGGTTCTATTACAAGTCTTATGATGACTTGGAAGATAAATTC TTCCATTCAGCTTGGTTTATTGAGGGTCTTCTCATGCAGACACTCATCATCCATTTGATTAGGACAGAGAAAGTCCCTTT CATACAGGATGTTGCTTCTTGGCCAGTGATTTGTTCCACTCTTGTGGTTTCTGCTATTGGAATTGCATTTCCATTCACAC CCATTGGGAAGGTCATGGGATTCATTGTTTTACCTGTCTCATTTTTTGGGTTTTTGGTTGTTCTTTTTCTGGGATATTTC ACTATTGGCCAGGTTGTTAAGAGACTTTACATAATGGTTTATAAGAGATGGCTATGA
Protein sequence (LotjaGi4g1v0393900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQNHSFSFLPSFSIAGKPDGGSRTEEEEKVYSWLYTLAQSDKNLVFEYVRSTERGLTFTEAESRLQENGPNVPFDYSFP SWWHFLWKALFHAFNMILIVLSALSFITCDYPNGSIMLILVFISVSLRFYQEYSSSKAAKRLSEFLRCPVRVQRCAGRVV QTELKVQVDHRDVVPGDIVIFEPGDLFPGDISQASLTGESWTTEKTADVREDHSTPLLDLKNICFMGTNVVSGTGTGLVI STGSNTYLSTMFSKVGKKKPQDDFEKGLKWIFYMLISVMLVVVTVMFVTEYTSSLDLSKSILFAITVASALNPQMLPLII NTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNHAIMVNHLDCRGLPQEKVLRFAFLSSYFKTDHNFPL DDAIMAHVYSNGFRFQPSKWRKVDEIPFDFIRRRVSVILETEDMHSQFFGRYMVTKGALEEVMRVCSFIENFDKDGISTF SLDDYQRILNLSEELSNEGLRVIAVAIRKLEMQQTCETSNGIRRGCEDFERDMMFLGLVTFFDPPKDSAKQALFQLAKMG VQAKVLTGDSLSLATRVCREVGIKTTHVITGPELEQLDQDTFHETVQTATVLARLTPTQKLRVVQSLQTNGNHIVGFLGD GVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLLLR NEPLTARQLLTQNFIYSVGQIAIPWDKMDEEYVKTPHKFSGKGLPMFILWNAPVCTLCDVATLLFLWFYYKSYDDLEDKF FHSAWFIEGLLMQTLIIHLIRTEKVPFIQDVASWPVICSTLVVSAIGIAFPFTPIGKVMGFIVLPVSFFGFLVVLFLGYF TIGQVVKRLYIMVYKRWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| PANTHER | 29 | 895 | 867 | 0.0 | – | |
| PANTHER | 29 | 895 | 867 | 0.0 | – | |
| TIGRFAM | 29 | 897 | 869 | 2.7E-249 | ||
| SMART | 37 | 110 | 74 | 0.0016 | ||
| Pfam | 47 | 105 | 59 | 1.1E-10 | ||
| Gene3D | 51 | 257 | 207 | 1.8E-61 | – | |
| SUPERFAMILY | 52 | 895 | 844 | 9.68E-77 | ||
| Phobius | 85 | 107 | 23 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Gene3D | 88 | 350 | 263 | 1.8E-61 | – | |
| Phobius | 108 | 112 | 5 | - | – | |
| TMHMM | 111 | 130 | 20 | - | – | |
| Phobius | 113 | 130 | 18 | - | – | |
| TIGRFAM | 117 | 401 | 285 | 6.4E-24 | ||
| Phobius | 131 | 269 | 139 | - | – | |
| Pfam | 159 | 333 | 175 | 1.2E-25 | – | |
| SUPERFAMILY | 159 | 253 | 95 | 2.88E-19 | ||
| TMHMM | 267 | 289 | 23 | - | – | |
| PRINTS | 267 | 283 | 17 | 4.1E-29 | ||
| Phobius | 270 | 289 | 20 | - | – | |
| Phobius | 290 | 300 | 11 | - | – | |
| Phobius | 301 | 325 | 25 | - | – | |
| Phobius | 326 | 696 | 371 | - | – | |
| SFLD | 336 | 688 | 353 | 0.0 | – | |
| SFLD | 336 | 688 | 353 | 0.0 | – | |
| SUPERFAMILY | 350 | 688 | 339 | 1.1E-32 | ||
| Pfam | 350 | 651 | 302 | 1.4E-14 | – | |
| Gene3D | 351 | 363 | 13 | 1.8E-61 | ||
| ProSitePatterns | 356 | 362 | 7 | - | ||
| Gene3D | 417 | 544 | 128 | 7.1E-71 | ||
| Gene3D | 545 | 682 | 138 | 7.1E-71 | ||
| TIGRFAM | 605 | 717 | 113 | 6.1E-24 | ||
| Gene3D | 683 | 792 | 110 | 7.1E-71 | – | |
| PRINTS | 696 | 711 | 16 | 4.1E-29 | ||
| TMHMM | 697 | 719 | 23 | - | – | |
| Phobius | 697 | 719 | 23 | - | – | |
| Phobius | 720 | 724 | 5 | - | – | |
| Phobius | 725 | 745 | 21 | - | – | |
| Phobius | 746 | 765 | 20 | - | – | |
| PRINTS | 746 | 759 | 14 | 4.1E-29 | ||
| PRINTS | 766 | 782 | 17 | 4.1E-29 | ||
| Phobius | 766 | 790 | 25 | - | – | |
| TMHMM | 768 | 790 | 23 | - | – | |
| Phobius | 791 | 801 | 11 | - | – | |
| TMHMM | 800 | 819 | 20 | - | – | |
| PRINTS | 801 | 822 | 22 | 4.1E-29 | ||
| Phobius | 802 | 820 | 19 | - | – | |
| Phobius | 821 | 831 | 11 | - | – | |
| TMHMM | 831 | 853 | 23 | - | – | |
| Phobius | 832 | 852 | 21 | - | – | |
| PRINTS | 851 | 872 | 22 | 4.1E-29 | ||
| Phobius | 853 | 857 | 5 | - | – | |
| Phobius | 858 | 882 | 25 | - | – | |
| TMHMM | 858 | 880 | 23 | - | – | |
| Phobius | 883 | 898 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium-importing ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mg2+(out) -> ADP + phosphate + Mg2+(in). | ||
| Biological process | Magnesium ion transport | The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0393900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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