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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0453900 |
| Transcript ID | LotjaGi4g1v0453900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A151T389|A0A151T389_CAJCA TMV resistance protein N; Found in the gene: LotjaGi4g1v0453900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82585774..82590886) extracted from Lotus japonicus Gifu genome v1.2.
ACATAAAATAAGTCATTACAATCATTAAATTTAATTATCATAATCACTTTACCACATACACTTTAGACTTTAGAGCAGAA CCCTTGCGGAAATTAATGTTGTAAGAATTTCTTCAAAAAGTTAACCACCAGCAGGAAGCGTGGTACAATGAAAGGGAAAA ACTGTTCAGTATGGTAAAGAATAATAGATGAGTGGTCAATATCTAAAGGGAGCTGAAGGATAGGAACTTATTCTTGTTTT TTTGAAACTCACTTGTTCTTGTTAATTGCAAAAAGCAGATCAAGGAAAGACATTTTGATTCCAATCCAATGTCTGCGAGC TCTTCTTCTTCTTCTGCTGCTGCTGCTGTTATGGCTCCTCCTTCTCCTCCACCAAAGTATGATGTGTTTGTGAGCTTTAG AGGGGAAGATACGCGTGACAACTTCACTAGTCATTTCTATGCTGAACTTAGCAGAAAAAATATCCAAGCCTTCATAGATA ATAGACTAGGCAGAGGTGATGAGATCTCACCAGCACTCCACACAGCAATTGAAGATTCCATGATTTATGTCATCGTTTTC TCGGAACACTATGCTTCTTCCTCGTGGTGTTTGGATGAACTTGCCAGGATACTCGAGTGCAGGAAGAGATATGGAAGGGA GGTGATACCGGTTTTCTACAAGGTGAATCCATCAAGTGTTAGGCATCAGGAACAGAGTTATGCAGATGCTTTTGCTAAGC ATGAACTGGGATTCAAGGATGAAGTCATTCGGAGGTGGAAGGCTGCTCTAGCAGAAGCAGCTGGAATTTCCGGCTGGGAT TCAAACACCACCAGGTCAATAATGTTTTTTAATGTTATAATTAGACTTCATTTAACTTTTATACCTCTAAATTTTTTTAG CTAATTAAGTTCTAATACTGTTAAAATTAAGTAGGTAACTTTGATCCGATTTTGTCAAATTTCATAGACTTTAAATTCTT GAATATTTATTTTGTATTCAAATATTTTGTACGTTTTAGTTGTGGTCTTCATTTTACAAATCAAAAGCACCAAATGTGAC ACAATTATGTTGGCCTACCAAATGATGTTAGATTGTTGGTTCATATAAACCCCTATATAGAATGGAAGACTAATGCTTAG TTACTTTTATTATATGTTCCAGATCAGAATCCATGCTTATTGATCGTATTGTAGAAGATATTTTGAAAAAATTGAATCGT TCTGTCTCAAGTGAAACTCAAGGAATGGTTGGAATTGACAAGCATATTGCACAAATCCAGTCCTTGTTGCAGCTTCAGTC AGCAGCTGTTCGGATCATAGGAATTTGGGGCATGAGAGGAATAGGTAAAACTACACTGGTTGAGGCGTATCACAAACTGG GGACCCAATTCAGCTCTAGAAGCTTAACTGTGAATGCTCAACAAGAAATAGAAAGAGTTGGAACAAATGGTCTACGTCAA AAATACTTATCAGAGCTTTTAGATGAAGGAGGCAGCACGTCCAATGGATCAGGTTTTGCAGATGAAAGGCTCAAACAGGC AAAGGTTCTCCTTATTCTTGATGACGTGAAAAACTCGAGTCAAATTCAGGAATTAATTCGAGGACGTGGATACTTCAGTC AGGGAAGTAGAATCATTGTGACTAGCAGAGACAGGCAGGTGCTTCACAATGCTAGAGTTGATGAAATATATGAAGTCAAG GAGATGAGTTACAAAGATTCTCTACAACTATTTAGTTTACATGCCTTTAAACAAAAAAGTCCGGTGGGAGTTAATGCAGA TTTGGCAGATAAGGTATTAGAATATGCTAAAGGTATCTCAATAGCTCTCAAAGTTTTAGGCTCACTGCTATATGGTAGAA CAAGGAAAGTATGGGAAAGTCATTTGGAAAAGCTTCCCGATGACCAAATTTTCAGTGTGTTGAAATTAAGTTATGATGGG CTGGATGATGAACATAAGGACATATTTCTTGATATAGCTTGCTTCTATAGAGGACATTCGATGAATGTAGCAGTGGATTT GCTAGATGGTTGTGGTTTCTCTGCTGACATTGGAATTGATGTTCTCAAAGATAGGGGCCTCATATATATTTTGGAAGATC AAATCAGGCTGCATGATCTAATATGGGATATGGGAAAACAAATTGTTCGCCAACAATGTCTCAATGATCCTGGAAAACGC AGTCGTTTATGGAAACATAAAGAAGTTTATGATGTTTTAAGAAAGAACCAGGTATGTTATTCTGCACCTCAAGCCCCACT TGATAACGCTCATGGATTTACTCCTCTCAGACTACAAAGGACTGAGCAGTTACTAATTTTCCTATAACTACATGTTTTCA TGATTATTTATCTTTAGTTCCTTGCGTTTACTTCCAGGGTACGGGTGCAATCCAGTGTATATCCACTGACCTGTACAAAA TTAAAGAAGTTGAACTACAATATGAAATTTTCAAAAGCATGCCTAATCTGAGAATGCTATATTTCTATACTAAGGCATTT TGGTTTGGGAGAGGTCAATCAAATGTGATCCTTCCTACATATCTTGAAAGTCTTCCGGATGGTTTAAAAGTTCTTTATTG GGATAGATTTCCTCTAAGATCTTTGCCACTCAACTTTTGTTCAGAAAATCTTGTTAAACTTTATATGCATCATAGCCAGC TTAAACAACTTTGGAAGGACGATCAGGTGCTTCAAACTTTATGTTGTGTTCCTTTGTATAATAATAATAAACTCTTATTC ATTATGCCATATATATAGGGTCAAGTTTACATTTTTTTTGTCACCTAATCATTTACTTTTTACATCAGGAATTACCGAAT TTGAAAAGGCTCGATCTTAGTCATTCTTCAGACCTGATTCGAATACCAGGCCTTTCTTTGTTCCCAAATATTGAAGAAAT AATTCTTAGTGATTGCAAAAGCTTGATTCAAGTTTACTCTTCAAGTTTCCTCAGCAAGCTCAAATGTTTATGGCTAATTG GTTGTGTTAAGCTTAGGAGTTTAAATGTTCCTAGCCGTATTCTATCAAGATCTTCTGGATCAGTGGGGCTCTATAACTGT TGCAAGCTCGAAACTTTTTCAATCAATAGAACCGAGGTGGTTGAATCAAGTGGTCATTCACATTTTGATGGACTCTTAGG AGCATTTGAAATTTATGATGATGCAAAAGGTGCCTCTAGCTATCAAGAGATGAACGGACTAGGTCTGGATGAAAAATATT CAACAAATCTTGAATGGTTTAGAAAAGGTAAGCCCTCACGAGTTTCCCATGAACTTTGTTGGTTAGATCTGGGTAGTTGT GAATCCCTTACAATGCTTCCAATTGACCTTTGTAAGTTGAAATTGCTAAGAAGACTCGATCTGAGTGGTTGCTCAAATTT GGAAAAATTCCCTGAAATTGTGGACACAATGGAAAATTTAGCTGTGCTTGTCTTAGACCAAACAGCAATACAAGAACTAC CTTCATCCTTGGACCGTTTGGTGGGACTTGAAGAACTGAGCTTGCACAAATGTCGAAGGCTTGAGATTATACCCTCTTCG ATTGGAAGACTAACCAAACTCTGCAAGTTAAACCTTACCTGCTGTGTATCACTTGAAACTTTTCCAAGCAGCATTTTCAA ATTGAAGTTGACAGAACTTGATTTGTTTTGTTGCTCAAAGCTAAAGACCTTACCAAAGATCTTGGAGCCGGCAGAAAGCT TTGCTCACATTAACTTATCATATACATCAATTAAAGAACTTCCTTCATCATTGGATTTTTTGGTGGGTCTTCAAACCCTT TGTCTGGAAGAGTGTCGTAATCTGGAGTCACTTCCAAACATCATTGGTAATCTAAACATTCTCTCTGATCTTGACTGTAC TAGCTGTTCTAATTTAACAGAAATCCCAAATGACATAGGTCGCTTGTTATCATTAAGGAAATTGTCACTATGTTATACCA GAATGGTGAATCTTCCGGAGAGTATTGCTCAACTTTCAAGCTTGGAATCACTTGATGTAAGAGATTGCAGAGAGCTTGAA TGTATTCCACAACATCCACCATTTCTGATAATGTTATTGGCATTTCGTTGCCCATCCATTAGGAGAGTGCTGCCAAATTC AAGGGTTAAACCCTGGTCAGGTTCTAGAGAGGGTAGTGATGAACTAGATCCAAGTGCTTATAGTGATGTTGTGGCCGATG CCAGGGTTAGGATCATTGAGGATGCATATAGGTTTGTGTACTATTGCTTTCCAGGGAGTGAAGTTCCTGATTGGTTCCCT TATAGTTGCGAGGGAAATTCAGTAACCATGGATCAAGATTTTCAATATTGGTGCAATGATAATAGGCTCATTGGTTTTGC TATGTGTGTCGTTTTGCCAGTTGAAGATGTAAACTGCATATGTTATCTTAATGGTGACTTAAGATGCAGATTAACATTTG AATCTGATGGCAACACACACATCCTTCCCAACAATGTTCATCTACACAACTCTTTCTATCGGTGTTCTCATAGAATGTAT AATGACATGCCAGATCACACATTCATAGGGAAATATTACTTCAGGGACTCTGCAGGCGTCGACATAGGGATCTCTTATGG CCTCCACTTCACTTTTGGAATCAGCCTTCCGTGGCTAGATTTTGAATCAAGCCTCGAGGTGAAAGAGTGCGGAATATGGC CTCTTTATCAAAGAACAAGGCATTTTTCGAATAAGCCAATTCATTTGGGACCCCACAGATCCACTTATACCAAAGAAAGA GATGATATTGGCAGCATAGTTGATTCTTCTAGCTTTCCAAGAGTTTCAAATAATGACTTTGAAGAACGTAAAGGGAAGAG GAAGTGTCTAGGGTGAAACATCTCTAGGAAAAATTGTAAATTTCTTGTCTGTTAAGTCAGGTTGTATCACAAATGTGGAT TTTGTGGCTCTTACAATACTCAGGTAATCAAGTTAAGACATATTCCAGCTACTCTTAGTGTGCTTCTTCTGATAGGAGAT AAACAGAGTTTGTAAATACTTGTGTAGTATTAGGAAGCATAGCAGATACAAAATGTGTAAATGTTTGTTGTATTTGGAAT ATTTGATTTTCTGTTTTCAATTGGTTAACATGTCTGGGAAGGCAAATCATGCTTTCCGGCAGCCAGACAAGAA
CDS sequence (LotjaGi4g1v0453900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCGAGCTCTTCTTCTTCTTCTGCTGCTGCTGCTGTTATGGCTCCTCCTTCTCCTCCACCAAAGTATGATGTGTT TGTGAGCTTTAGAGGGGAAGATACGCGTGACAACTTCACTAGTCATTTCTATGCTGAACTTAGCAGAAAAAATATCCAAG CCTTCATAGATAATAGACTAGGCAGAGGTGATGAGATCTCACCAGCACTCCACACAGCAATTGAAGATTCCATGATTTAT GTCATCGTTTTCTCGGAACACTATGCTTCTTCCTCGTGGTGTTTGGATGAACTTGCCAGGATACTCGAGTGCAGGAAGAG ATATGGAAGGGAGGTGATACCGGTTTTCTACAAGGTGAATCCATCAAGTGTTAGGCATCAGGAACAGAGTTATGCAGATG CTTTTGCTAAGCATGAACTGGGATTCAAGGATGAAGTCATTCGGAGGTGGAAGGCTGCTCTAGCAGAAGCAGCTGGAATT TCCGGCTGGGATTCAAACACCACCAGATCAGAATCCATGCTTATTGATCGTATTGTAGAAGATATTTTGAAAAAATTGAA TCGTTCTGTCTCAAGTGAAACTCAAGGAATGGTTGGAATTGACAAGCATATTGCACAAATCCAGTCCTTGTTGCAGCTTC AGTCAGCAGCTGTTCGGATCATAGGAATTTGGGGCATGAGAGGAATAGGTAAAACTACACTGGTTGAGGCGTATCACAAA CTGGGGACCCAATTCAGCTCTAGAAGCTTAACTGTGAATGCTCAACAAGAAATAGAAAGAGTTGGAACAAATGGTCTACG TCAAAAATACTTATCAGAGCTTTTAGATGAAGGAGGCAGCACGTCCAATGGATCAGGTTTTGCAGATGAAAGGCTCAAAC AGGCAAAGGTTCTCCTTATTCTTGATGACGTGAAAAACTCGAGTCAAATTCAGGAATTAATTCGAGGACGTGGATACTTC AGTCAGGGAAGTAGAATCATTGTGACTAGCAGAGACAGGCAGGTGCTTCACAATGCTAGAGTTGATGAAATATATGAAGT CAAGGAGATGAGTTACAAAGATTCTCTACAACTATTTAGTTTACATGCCTTTAAACAAAAAAGTCCGGTGGGAGTTAATG CAGATTTGGCAGATAAGGTATTAGAATATGCTAAAGGTATCTCAATAGCTCTCAAAGTTTTAGGCTCACTGCTATATGGT AGAACAAGGAAAGTATGGGAAAGTCATTTGGAAAAGCTTCCCGATGACCAAATTTTCAGTGTGTTGAAATTAAGTTATGA TGGGCTGGATGATGAACATAAGGACATATTTCTTGATATAGCTTGCTTCTATAGAGGACATTCGATGAATGTAGCAGTGG ATTTGCTAGATGGTTGTGGTTTCTCTGCTGACATTGGAATTGATGTTCTCAAAGATAGGGGCCTCATATATATTTTGGAA GATCAAATCAGGCTGCATGATCTAATATGGGATATGGGAAAACAAATTGTTCGCCAACAATGTCTCAATGATCCTGGAAA ACGCAGTCGTTTATGGAAACATAAAGAAGTTTATGATGTTTTAAGAAAGAACCAGGTATGTTATTCTGCACCTCAAGCCC CACTTGATAACGCTCATGGATTTACTCCTCTCAGACTACAAAGGACTGAGCAGTTACTAATTTTCCTATAA
Protein sequence (LotjaGi4g1v0453900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASSSSSSAAAAVMAPPSPPPKYDVFVSFRGEDTRDNFTSHFYAELSRKNIQAFIDNRLGRGDEISPALHTAIEDSMIY VIVFSEHYASSSWCLDELARILECRKRYGREVIPVFYKVNPSSVRHQEQSYADAFAKHELGFKDEVIRRWKAALAEAAGI SGWDSNTTRSESMLIDRIVEDILKKLNRSVSSETQGMVGIDKHIAQIQSLLQLQSAAVRIIGIWGMRGIGKTTLVEAYHK LGTQFSSRSLTVNAQQEIERVGTNGLRQKYLSELLDEGGSTSNGSGFADERLKQAKVLLILDDVKNSSQIQELIRGRGYF SQGSRIIVTSRDRQVLHNARVDEIYEVKEMSYKDSLQLFSLHAFKQKSPVGVNADLADKVLEYAKGISIALKVLGSLLYG RTRKVWESHLEKLPDDQIFSVLKLSYDGLDDEHKDIFLDIACFYRGHSMNVAVDLLDGCGFSADIGIDVLKDRGLIYILE DQIRLHDLIWDMGKQIVRQQCLNDPGKRSRLWKHKEVYDVLRKNQVCYSAPQAPLDNAHGFTPLRLQRTEQLLIFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 523 | 505 | 4.2E-168 | – | |
| PANTHER | 19 | 523 | 505 | 4.2E-168 | – | |
| SUPERFAMILY | 19 | 163 | 145 | 3.14E-39 | ||
| Gene3D | 22 | 185 | 164 | 1.2E-66 | ||
| ProSiteProfiles | 22 | 160 | 139 | 27.581 | ||
| SMART | 23 | 160 | 138 | 6.7E-46 | ||
| Pfam | 23 | 198 | 176 | 1.9E-48 | ||
| Gene3D | 186 | 345 | 160 | 8.3E-28 | – | |
| SUPERFAMILY | 191 | 440 | 250 | 5.63E-52 | ||
| Pfam | 202 | 419 | 218 | 6.3E-22 | ||
| CDD | 202 | 252 | 51 | 0.00442793 | – | |
| PRINTS | 220 | 235 | 16 | 3.4E-16 | – | |
| PRINTS | 291 | 305 | 15 | 3.4E-16 | – | |
| PRINTS | 384 | 398 | 15 | 3.4E-16 | – | |
| SUPERFAMILY | 416 | 521 | 106 | 2.2E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi4g1v0453900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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