Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0463000 |
| Transcript ID | LotjaGi4g1v0463000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|K7KRF4|K7KRF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0463000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83314806..83317410) extracted from Lotus japonicus Gifu genome v1.2.
ATTCGCAGTGAGACAATTACATACGAAACCTACCTGCAACTTTCAAATTCAACTACCTAGGCCAACATCATCCTCCCAAA TTAGAGACAGAGAACAAGACACAGTTCAATGGAACAAGGTCATTTCTACCCACATGCGCAATGGCCACTGCGATTCTGCT CTCCGTGTCTTCAACACCATGCCTCGTCGAAGCTCTGTCTCCTACAATGCCATGATATCTGGCTACTTGAAGAACGCCAA GTTCACCCTTGCAAGAGACCTGTTTGATAAAATGCCTCAGAGGGACTTGTTTTCCTGGAATTTAATGCTCACTGGGTATG TCAGGAATCACAGACTTGGCGAGGCTCGCAAGTTGTTTGATTTAATGCCTCAAAAGGATGTTGTTTCCTGGAATGCCATG TTGTCCGGCTATGTCAGGAGTGGGTACGTTCATGAGGCAAGAGAAGTTTTTGATAAGATGCCTCATAAGAATTCCATCTC CTGGAATGGGTTGCTCTCAGCATATGTTCAGAATGGGAGACTTGAGGAGGCTCGCTGGTTGTTTGAGTCAAAGTCAGACT GGGATTTGGTTTCTTGGAATTGTTTGATGGGTGGTTATGTGAAGGCGAAGATGTTAGGTGATGCTAGACAGCTTTTTGAC CAAATGCCTGTTAGGGATGTAATCTCCTGGAATACCATCATTTCAGGTTATGCCCAGGATGGAGATTTGTCACAGGCTAG GAGATTGTTTGAGAAGTCTCCAACCAGGGATGTTTTCACGTGGAAAGCACTGGTCTGTGCATATGTGCAGAACGGGATGT TGAATGAAGCGAGAAGATTTTTCGATGAAATGCCGGAAAAAATAGAGATATCATACAATGCAATGATTGCTGGTTATGTG CAATACAAGAAAATGGAAATGGCAAGGGAATTATTTGAGGCAATGCCTTGTCAGGGAACAGGTTCATGGAATATTATGAT AAGTGGATATGCTCAGAATGGTGATATAGTTCAAGCTAGGAACTTGTTTGATTTGATGCCTCGGCGTGATTGTGTATCTT GGGCGGCTATTATTGCTGGTTATGCGCAGACTGGTCACTATGAAGAAGCTCTGAAATTGCTTGTGGAGATGAAACGGGAT GGGGAAAGTTTAAATAGATCTATCTTTTGTTGTGCTTTAAGCACATGTGCTGATATTGCTGCTTTGGAGCTGGGGAAACA AGTTCATGGGCAGGTGGTGAAGACAGGGTATGAGAATGGTTGTTTAGTGGGGAATGCTCTTGTTGGAATGTATTGTAAAT GTGGCAGCATAGATGAAGCTTATAATGTGTTCGAAAGAATACAAAACAAAGATATCATTTCCTGGAACACATTGTTAGCT GGTTATGCTAGGCATGGATTTGGCAGACAGGCTTTAATATTGTTTGATTCAATGAAGATAGCAGGTGTTAAACCCGATGA GATTACCATGGTATGTATGTTTTATGTATTTAATGCATTTCTTATGCTTGAGTGAGTTCCTTGTCTAATTGTGTTGATTG GAAGAACTACTATCTTCAGTGCTTTAGATTTCACTTCATTGTATTTTAATTTAGACATAGCTGGTTTACAACTTTTTAAT TTTCTGATTAAAGAGCTGATGGTATTGTATGCTTAATTTAGCCATAAAATCATACATGTTGTGTGCTTTTAAATTGAGGT GTTAATGATAATATTGTTCTATCTGCAATGCAGTAGCATACTAGCATGCCAGTTGACTGTTTTCTACTAGTAACACTATT CTGCTTATTCTTCTTCTAATCATATATTCATATTTCAGGTTGGAGTTCTGTCAGCATGCAGTCACACGGGCTTGATAGAC AGAGGAGCAGAATATTTTTATTCAATGAATAAGGATTATGGTATAACACCAAATTCAAAACATTATACTTGCATGATTGA TCTTCTTGGTAGAGCTGGCCGCCTAGAAGAAGCACAAAACTTAATGAGAATCATGCCCTTTGAGCCAGATGCTGCAACAT GGGGAGCTCTACTAGGAGCAAGCCGGATTCATGGCAATACTGAACTTGGGGAGAAGGCTGCTGAGATGGTTTTTAAGAAG GAAACCCACAACTCAGGAATGTATGTCCTTCTTTCAAATTTATATGCTGCTTCAGGTAGATGGGTTGATGCTGGTAAGAT GAGATTGAAAATGAGGGAAGCTGGTGTTCAGAAAATACCAGGGTGTAGTTGGGTTGAGATACAAAACAAGATTCATTCAT TCACAGTAGGGGATTGTTTTCACACAGAAAAAGATAAAATATATGCCTTCTTAGAAGAGTTAGATCTTAAAATGAAGCGT GAGGGGTATGTTTCTTCAGTGAAATTGGTTTTGCATGATGTGGAAGAGGCAGAGAAGGAGCGTATGCTCAAGTATCACAG TGAGAAATTAGCTGTAGCATTTGGAATTCTGAGTATACCGGCTGGCAGGCCAATTCGTGTCATGAAAAACTTGCGTGTGT GTGAGGACTGTCATAATGCTATCAAACACATATCCAAGATTGTTGGAAGGTTGATAATCTTAAGGGATTCTCATCGCTTT CACCACTTCAGTGAGGGTATTTGTTCTTGTGGGGATTATTGGTAA
CDS sequence (LotjaGi4g1v0463000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCAATGGCCACTGCGATTCTGCTCTCCGTGTCTTCAACACCATGCCTCGTCGAAGCTCTGTCTCCTACAATGCCAT GATATCTGGCTACTTGAAGAACGCCAAGTTCACCCTTGCAAGAGACCTGTTTGATAAAATGCCTCAGAGGGACTTGTTTT CCTGGAATTTAATGCTCACTGGGTATGTCAGGAATCACAGACTTGGCGAGGCTCGCAAGTTGTTTGATTTAATGCCTCAA AAGGATGTTGTTTCCTGGAATGCCATGTTGTCCGGCTATGTCAGGAGTGGGTACGTTCATGAGGCAAGAGAAGTTTTTGA TAAGATGCCTCATAAGAATTCCATCTCCTGGAATGGGTTGCTCTCAGCATATGTTCAGAATGGGAGACTTGAGGAGGCTC GCTGGTTGTTTGAGTCAAAGTCAGACTGGGATTTGGTTTCTTGGAATTGTTTGATGGGTGGTTATGTGAAGGATGGAGAT TTGTCACAGGCTAGGAGATTGTTTGAGAAGTCTCCAACCAGGGATGTTTTCACGTGGAAAGCACTGGTCTGTGCATATGT GCAGAACGGGATGTTGAATGAAGCGAGAAGATTTTTCGATGAAATGCCGGAAAAAATAGAGATATCATACAATGCAATGA TTGCTGGTTATGTGCAATACAAGAAAATGGAAATGGCAAGGGAATTATTTGAGGCAATGCCTTGTCAGGGAACAGGTTCA TGGAATATTATGATAAGTGGATATGCTCAGAATGGTGATATAGTTCAAGCTAGGAACTTGTTTGATTTGATGCCTCGGCG TGATTGTGTATCTTGGGCGGCTATTATTGCTGGTTATGCGCAGACTGGTCACTATGAAGAAGCTCTGAAATTGCTTGTGG AGATGAAACGGGATGGGGAAAGTTTAAATAGATCTATCTTTTGTTGTGCTTTAAGCACATGTGCTGATATTGCTGCTTTG GAGCTGGGGAAACAAGTTCATGGGCAGGTGGTGAAGACAGGGTATGAGAATGGTTGTTTAGTGGGGAATGCTCTTGTTGG AATGTATTGTAAATGTGGCAGCATAGATGAAGCTTATAATGTGTTCGAAAGAATACAAAACAAAGATATCATTTCCTGGA ACACATTGTTAGCTGGTTATGCTAGGCATGGATTTGGCAGACAGGCTTTAATATTGTTTGATTCAATGAAGATAGCAGGT GTTAAACCCGATGAGATTACCATGGTTGGAGTTCTGTCAGCATGCAGTCACACGGGCTTGATAGACAGAGGAGCAGAATA TTTTTATTCAATGAATAAGGATTATGGTATAACACCAAATTCAAAACATTATACTTGCATGATTGATCTTCTTGGTAGAG CTGGCCGCCTAGAAGAAGCACAAAACTTAATGAGAATCATGCCCTTTGAGCCAGATGCTGCAACATGGGGAGCTCTACTA GGAGCAAGCCGGATTCATGGCAATACTGAACTTGGGGAGAAGGCTGCTGAGATGGTTTTTAAGAAGGAAACCCACAACTC AGGAATGTATGTCCTTCTTTCAAATTTATATGCTGCTTCAGGTAGATGGGTTGATGCTGGTAAGATGAGATTGAAAATGA GGGAAGCTGGTGTTCAGAAAATACCAGGGTGTAGTTGGGTTGAGATACAAAACAAGATTCATTCATTCACAGTAGGGGAT TGTTTTCACACAGAAAAAGATAAAATATATGCCTTCTTAGAAGAGTTAGATCTTAAAATGAAGCGTGAGGGGTATGTTTC TTCAGTGAAATTGGTTTTGCATGATGTGGAAGAGGCAGAGAAGGAGCGTATGCTCAAGTATCACAGTGAGAAATTAGCTG TAGCATTTGGAATTCTGAGTATACCGGCTGGCAGGCCAATTCGTGTCATGAAAAACTTGCGTGTGTGTGAGGACTGTCAT AATGCTATCAAACACATATCCAAGATTGTTGGAAGGTTGATAATCTTAAGGGATTCTCATCGCTTTCACCACTTCAGTGA GGGTATTTGTTCTTGTGGGGATTATTGGTAA
Protein sequence (LotjaGi4g1v0463000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLKNAKFTLARDLFDKMPQRDLFSWNLMLTGYVRNHRLGEARKLFDLMPQ KDVVSWNAMLSGYVRSGYVHEAREVFDKMPHKNSISWNGLLSAYVQNGRLEEARWLFESKSDWDLVSWNCLMGGYVKDGD LSQARRLFEKSPTRDVFTWKALVCAYVQNGMLNEARRFFDEMPEKIEISYNAMIAGYVQYKKMEMARELFEAMPCQGTGS WNIMISGYAQNGDIVQARNLFDLMPRRDCVSWAAIIAGYAQTGHYEEALKLLVEMKRDGESLNRSIFCCALSTCADIAAL ELGKQVHGQVVKTGYENGCLVGNALVGMYCKCGSIDEAYNVFERIQNKDIISWNTLLAGYARHGFGRQALILFDSMKIAG VKPDEITMVGVLSACSHTGLIDRGAEYFYSMNKDYGITPNSKHYTCMIDLLGRAGRLEEAQNLMRIMPFEPDAATWGALL GASRIHGNTELGEKAAEMVFKKETHNSGMYVLLSNLYAASGRWVDAGKMRLKMREAGVQKIPGCSWVEIQNKIHSFTVGD CFHTEKDKIYAFLEELDLKMKREGYVSSVKLVLHDVEEAEKERMLKYHSEKLAVAFGILSIPAGRPIRVMKNLRVCEDCH NAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 19 | 19 | 5.305 | ||
| Gene3D | 1 | 81 | 81 | 1.0E-20 | ||
| SUPERFAMILY | 13 | 139 | 127 | 1.9E-5 | ||
| ProSiteProfiles | 20 | 54 | 35 | 10.578 | ||
| TIGRFAM | 22 | 51 | 30 | 3.0E-6 | ||
| Pfam | 22 | 51 | 30 | 4.9E-6 | ||
| TIGRFAM | 53 | 83 | 31 | 1.3E-5 | ||
| Pfam | 53 | 82 | 30 | 1.4E-5 | ||
| ProSiteProfiles | 55 | 81 | 27 | 6.719 | ||
| PANTHER | 59 | 139 | 81 | 2.1E-117 | – | |
| ProSiteProfiles | 82 | 116 | 35 | 11.816 | ||
| Gene3D | 82 | 139 | 58 | 7.6E-17 | ||
| TIGRFAM | 84 | 113 | 30 | 1.7E-7 | ||
| Pfam | 84 | 112 | 29 | 2.3E-8 | ||
| Pfam | 115 | 138 | 24 | 3.1E-5 | ||
| ProSiteProfiles | 117 | 143 | 27 | 5.831 | ||
| PANTHER | 118 | 207 | 90 | 2.1E-117 | – | |
| Gene3D | 140 | 207 | 68 | 6.2E-10 | ||
| ProSiteProfiles | 144 | 174 | 31 | 9.273 | ||
| Pfam | 146 | 170 | 25 | 9.9E-5 | ||
| TIGRFAM | 146 | 170 | 25 | 1.8E-4 | ||
| ProSiteProfiles | 175 | 205 | 31 | 10.775 | ||
| TIGRFAM | 177 | 204 | 28 | 1.5E-5 | ||
| Pfam | 177 | 205 | 29 | 5.6E-6 | ||
| ProSiteProfiles | 206 | 236 | 31 | 8.144 | ||
| TIGRFAM | 208 | 237 | 30 | 1.5E-5 | ||
| Pfam | 208 | 237 | 30 | 7.0E-6 | ||
| Gene3D | 208 | 300 | 93 | 2.0E-22 | ||
| PANTHER | 211 | 264 | 54 | 2.1E-117 | – | |
| ProSiteProfiles | 237 | 267 | 31 | 9.449 | ||
| Pfam | 240 | 269 | 30 | 2.0E-7 | ||
| TIGRFAM | 240 | 270 | 31 | 5.5E-8 | ||
| PANTHER | 256 | 325 | 70 | 2.1E-117 | – | |
| ProSiteProfiles | 268 | 302 | 35 | 11.203 | ||
| Pfam | 270 | 299 | 30 | 1.0E-6 | ||
| TIGRFAM | 270 | 303 | 34 | 1.4E-6 | ||
| ProSiteProfiles | 303 | 337 | 35 | 5.196 | ||
| PANTHER | 307 | 534 | 228 | 2.1E-117 | – | |
| Gene3D | 316 | 433 | 118 | 8.5E-26 | ||
| ProSiteProfiles | 338 | 368 | 31 | 7.87 | ||
| TIGRFAM | 343 | 370 | 28 | 0.0021 | ||
| Pfam | 368 | 416 | 49 | 4.3E-10 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.805 | ||
| TIGRFAM | 371 | 405 | 35 | 2.2E-5 | ||
| ProSiteProfiles | 404 | 439 | 36 | 7.366 | ||
| Gene3D | 434 | 614 | 181 | 5.9E-15 | ||
| Pfam | 436 | 467 | 32 | 6.2E-6 | ||
| ProSiteProfiles | 440 | 470 | 31 | 8.309 | ||
| ProSiteProfiles | 506 | 540 | 35 | 7.772 | ||
| Pfam | 542 | 665 | 124 | 6.5E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0463000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…