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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0052700 |
| Transcript ID | LotjaGi5g1v0052700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate-tRNA ligase; TAIR: AT4G31180.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M084|SYDC2_ARATH Aspartate--tRNA ligase 2, cytoplasmic; TrEMBL-Plants: tr|I1M984|I1M984_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0052700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8800965..8806123) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATTAGGTCAAACAATTTTTTCTTTCAAAATCGATAGTCTCATACTCTCATCTCATTCCATTCCTACTAAAATTTC CTATGTGCGGTTGATAGTTTTCATACCGTATATATATTCCATTCCCTTCCTCCAATTTCATCAACCCTACCAGAAACCCT TCACCAAAAACCACACTCATTCTACTACATTGTCCACTCTCGCCGAAACGATGTCGTCTTCCGAATTTCAAGACCCACCA CCACCGCCATCGGAAGAATCTCAGAGCAAAAAGGCCGCCAAGAAAGAAGCCGCAAAGCTCGAGAAACTCCGCCGCCGCCA GGAGCTTGCCGCCGCCACCTCCGCCGCATCCAACCTCTCCGTCGATGACGACCCCCTCGCCGGAAACTACGGCGACGTCC CGCTCGTTGAGCTTCAGTCGAAGACTCCTGTCGACGTCTCCGACTGGACCCGCGTTGAGGCGCTCGATGCTTCGCTGGCG GACCGGGCTGTTCAGATCCGTGGTAGGGCTCAGACGATTCGTCCGGTTGGGAAGAAGATGGCGTTTTTGGTTGTGAGGGA GAATGGCTTCACTGTGCAGTGCTTGGTGCAGGCGCAGCCAGATGTGGTGAGTCCGCAGATGGTGAAATTCGCCGCCGCGC TGAACCGCGAGTCGATCATTGACGTCGTGGGTGTTGTTTCTGTCCCAGCCGCTCCCATCAAAGGCGCCACGCAGCAGGTT GGGTTTTCTTGTTGATTAGGGTTCATGATTTTGTGCAGTCTCTGAATTTGAAGGTTTTGATTTTCTATGATAATAGTCAA TTTTGATTAGCATTCACAAGGTTTTTCTTATTGCATAGCTAAGCTTCATAAGTCTGTTGATGCTTGTGGAGAAGTATGAT GAGGGAGCTTAAGAAAAAATGAGATGTAAAAGTTGATTTCAATAGATAATTTGCAGTTATTGTGAAGTTGTTTCATTTTG TTTTTGGAAGTGCTTATTGAAAGGGTTATTCAGACTGGATTTATCATGCTATTGAGTAATGATGTTTTGTGCCTGTAGGT GGAAATTCAAGTGAGGAAATTGTACTGTGTGGGTAGGGCTGTCCCGACTCTACCGATTAATCTGGAGGATGCTGCTCGGA GCGATGTTGAAGTTGAGAAGGCTCTTCAGGTAACACTGATTACAGATTTGTGGTTGTTTAATATAGTTATTATTGTCTCT TTTTTTTCTCTTTTCAAATTGCATGTTAATGGGGTTTCTCAATGGGTGCAGGCTGGTGACCAACTTGTTCGAGTGAATCA GGATACACGTTTGAACTTTAGAGTGCTTGACCTGAGAACACCTGCAAACCAAGGAATTTTCCGAATTCAATCTCATGTCG GAAATGTAAAGAATACCTACCATCTCTGAATTTATTCTGAAAAGTTTTTTTGTATTTATTTTTGTCACTAGTAAGTTCAT TGAATTAAATGTGTATTGGGATACTTGCTTAAGAAGTGCATTTTGCAATATGATACCAAGCTGAATTATCTAGTTAACTT TTGAATGGGTTGTTGTGCAGGCATTTAGACAATTTTTGTTGAAAGAAAACTTTGTTGAAATCCACACTCCAAAGTTGATT GCTGGATCTAGTGAGGGTGGAGCTGCTGTTTTTAGACTGGACTACAAAGGGCAACCTGCATGCTTGGCCCAATCACCTCA ACTTCATAAGCAAATGTCAATATGTGGTGACTTTGGCCGTGTTTTTGAGATTGGCCCTGTGTTTAGAGCAGAGGATTCTT TTACTCACAGACATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAGCATTACTTTGAGGTATTTTTG GCTCGTGGGCTGATATTGTGTGTTTGCTTTTGGAATTGTTGAGGGACATAACTTGGCTTACTGATATTTTTGAGTTTTTT TGGCAGGTTATGGATGTTGTTGATAAATTGTTTGTCGCGATGTTTGACAGTTTGAACCAGAATTGTAAGAAGGATCTGGA AGCTGTGGGATGTCAGTATCCATTTGAACCTCTGAAGGTGCTTTTTTTGTATCATCATAATTTTGTTATGTAGTGGATTT ATTACACTATTTGTTGCATAGTATTTAGTTGATCTGCTATGTAATGAGTGCATGATGCTTTTATTGTGTAATACTAGATT AGGTGCAAATTAGTGCATTAGTTACATGTTCTTGCTTCTGATCTGACAATAGCCCTGTGAATGTGCAGTATCTGCGAAAT ACTCTGCGTCTTACTTATGAAGAAGGGATTCAAATGCTCAAGGTAAGCTTTAAACTATCTTAACTATTAAGTTTGCTTGT GGTGGGCTAACTAAATAATGTGATAGGATGACGGTGTTGTCTGATGTTTTACATCTTCTATCCTTTTGTCTATTGCATCA CTCTGAGATAGAGAATGAGGGAGAGGAAGGGCCGGAGGGGGAGTCAAAGCACTTATAGGGAGTAGCCCATGCACTTTTTA ATCTCATATTATAGCATATAAAATATCAACTCTAAAAAATCTTTTAAGTCAATTTAACAATAACTTATGTCATAAACTCT TGAAATTATATGTATAAATGTCAATGAAAGGTTATTTATGATAGAAATTGTTGAAAATAGAATGCGATGGATAGAAATAA GAGCAGTAAGAGGGAGAGGAAGCTTTATAAAAAATTGGGTGGACAACTGTCCTGTGAAGTAAAGGATTTATTACAATTTA CAACTTAAGAAGTCATGTTCTATCACAATCCATAATTTCAGGTTTGAAAGCCTGTAATTTATTTGTTAAGAACTTGAGTT ATTTATTCGTTAATAACAAGCACTAATAGCAAAGACAACATCTACTCAAAACGGGCTTTGTAGTTTCATGTTTGCTCAGT TTTAAATGGTAGGCCTGTCATGTTTTCCCCAAAAGAAAAAGCAAATTAAATTCGTATTATCACTAGTGTGTGTGTGTGTG TGGCGCATATCATGCAAACATTGGTGGAATGAACAAAAAAATTTGAACCCTATTTAGAATCTTGCATTCAACCAAACAGA ATACAAAAATGCTTCCAAAAGCTTTTAGATCTTGCAAAGTCCAGTTCATGTGAAAGCCAGTGAATCTTCTCCAGTGACCT TGAGCTAGTTGAATTAGTCAAACGTACATGGCAGAGAGAAAAGGCATAAATTCAGTCTCAGAAATAAAATATGTATAAAG TCAGATTACAAACCATTTTAGGCAACAAGTTCAGTTAGATACCTTCAATTTAGTTGGGTGAATATATCAGATTGAATGGG ATCGAGGCCCAAAAGACACCCTTCAGTCTGTCCATACAGTGTGTTTGTCAATTTAAAATGGATTGCTTAAAATATTGGCT CATGATGGATGATATTAATGTATTATTCATGTTGATTTGTTCACTATGGAGAGTCTGATAACTTTTCAGAGTCATTAAAA TTGTTTCTCAACTTTTATCAGTTTTGTATGCTTATCAATTAAAAAATTGTCAGTTTTGATAAAGGATGCCATTATTGTAT TGTTTGTTGACTCTCTAGAGTGCTATCAGACAATGGTCCGGTGACTGAATTGGCACCACAGCTCTGATGATCTTAAAGTC TTCCTGTCTATTTTTTCTTCTTTATGTATGGTTATGGAATTCATTAACCTGTTGAATCTTGGACCTTCAGACTCAAAAAG GACTTAACCTATAATAACTATTATGATTATCTATAGGACGGTAGATATTTCGTATTTACACTATGACAGTCTTGCAGCTA CTAATGAATTCTCTTTGCAGGAGGCTGGAGTAGAAATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTA GGCAAACTAGTTCTAGAGAAGTAAACCCTTCTCTCTGTTTTTTACCACTAAATGTTGTGATGAGCTATTGTTTAAAATAT AAGCTACTATTCTATTTGTAGGTACGGCACGGAGTTCTATATCCTTCATCGGTACCCTTTGGCTGTAAGACCATTCTATA CAATGCCCTGCTATGACAATCCAGCTTACACCAACTCATTTGATGTCTTTATTAGAGGTAAGCAATAATTTATTTTGCTA TACGATGCTTTGGTATGACAATCTGGTGCACTTAACTCATCATCATACAGAGATTACCGTCATGTATCTCAGTAGAACCT TGCTGTTTCGGTTACTGTTATTTGATTTCTGCATATTGCTTCTCTTTAGGTGAGGAGATAATTTCAGGAGCTCAACGTAT CCACGTGCCAGATTTTTTGGAAGAACGTGCAGCGGCTTGTGGCATTGAAGTCAGTACAATATCGACATATATCGATTCTT TCAGGTATTGTATATCTATCACATTTACCCTCAGTTGCTCAATGTTTCATGTTAGACTGATCCTTTTGTTGAGCTCTGTT TAATTGGTAATTTCTGGGGGTAACTGCTTTTTTAATCATTTGCAGATATGGTGCACCACCGCATGGTGGCTTTGGAGTAG GTTTGGAGCGTGTCGTAATGCTCTTCTGCGGCCTAGATAACATTAGGAAGACATCACTTTATCCACGTGACCCGAAAAGG ATTGCGCCGTGATAATATTATCATATCCAAACAGTGGCTTAGATATTGAGTCTGTTTGTTTTCTTTTATCTTTATCCTCA AGATGTTCCTTTCAGTAGATTTTTTTTTTTGAAACTTCCTTTCAGTAGATTATTGTGGATATTGTTTGATTGGCAGTCTT GGAGCTGATATTTTGCACTTCATACGAAGTTACATTCTGATGTTTTACATAATGTAGTGTGTTTGGTTCCCTGATTGTGT CGATGCAAATGGAAAACCAAGGAAGAAGCAAGATTTTATTTATGTTTGGATTTCCATCGACTCCATGTCCACACATGATA AAATCTAACTTTTTCATTTCTGTGTTGGAACTAGTGTTTTTTTCCCGCGCGTTGCACGGGGAATATGTCTATCGTATTTG ATATATCAATTGATACCTTGATTATTAAAAATATATTAAACAACAGATGAAATAGAAGAGTCAGAAATTCTAAGCAAAGT TGACTTAAAGACTTCTCTTCTAAGCCTGATCCAGATCCACAGGAACTCGTTTCACATTCTTTGTCAATATGAAGACAATA GCACAATTATAGATATAAGGAATTGTCAACATATTAAAC
CDS sequence (LotjaGi5g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCTTCCGAATTTCAAGACCCACCACCACCGCCATCGGAAGAATCTCAGAGCAAAAAGGCCGCCAAGAAAGAAGC CGCAAAGCTCGAGAAACTCCGCCGCCGCCAGGAGCTTGCCGCCGCCACCTCCGCCGCATCCAACCTCTCCGTCGATGACG ACCCCCTCGCCGGAAACTACGGCGACGTCCCGCTCGTTGAGCTTCAGTCGAAGACTCCTGTCGACGTCTCCGACTGGACC CGCGTTGAGGCGCTCGATGCTTCGCTGGCGGACCGGGCTGTTCAGATCCGTGGTAGGGCTCAGACGATTCGTCCGGTTGG GAAGAAGATGGCGTTTTTGGTTGTGAGGGAGAATGGCTTCACTGTGCAGTGCTTGGTGCAGGCGCAGCCAGATGTGGTGA GTCCGCAGATGGTGAAATTCGCCGCCGCGCTGAACCGCGAGTCGATCATTGACGTCGTGGGTGTTGTTTCTGTCCCAGCC GCTCCCATCAAAGGCGCCACGCAGCAGGTGGAAATTCAAGTGAGGAAATTGTACTGTGTGGGTAGGGCTGTCCCGACTCT ACCGATTAATCTGGAGGATGCTGCTCGGAGCGATGTTGAAGTTGAGAAGGCTCTTCAGGCTGGTGACCAACTTGTTCGAG TGAATCAGGATACACGTTTGAACTTTAGAGTGCTTGACCTGAGAACACCTGCAAACCAAGGAATTTTCCGAATTCAATCT CATGTCGGAAATGCATTTAGACAATTTTTGTTGAAAGAAAACTTTGTTGAAATCCACACTCCAAAGTTGATTGCTGGATC TAGTGAGGGTGGAGCTGCTGTTTTTAGACTGGACTACAAAGGGCAACCTGCATGCTTGGCCCAATCACCTCAACTTCATA AGCAAATGTCAATATGTGGTGACTTTGGCCGTGTTTTTGAGATTGGCCCTGTGTTTAGAGCAGAGGATTCTTTTACTCAC AGACATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAGCATTACTTTGAGGTTATGGATGTTGTTGA TAAATTGTTTGTCGCGATGTTTGACAGTTTGAACCAGAATTGTAAGAAGGATCTGGAAGCTGTGGGATGTCAGTATCCAT TTGAACCTCTGAAGTATCTGCGAAATACTCTGCGTCTTACTTATGAAGAAGGGATTCAAATGCTCAAGGAGGCTGGAGTA GAAATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCAAACTAGTTCTAGAGAAGTACGGCACGGA GTTCTATATCCTTCATCGGTACCCTTTGGCTGTAAGACCATTCTATACAATGCCCTGCTATGACAATCCAGCTTACACCA ACTCATTTGATGTCTTTATTAGAGGTGAGGAGATAATTTCAGGAGCTCAACGTATCCACGTGCCAGATTTTTTGGAAGAA CGTGCAGCGGCTTGTGGCATTGAAGTCAGTACAATATCGACATATATCGATTCTTTCAGATATGGTGCACCACCGCATGG TGGCTTTGGAGTAGGTTTGGAGCGTGTCGTAATGCTCTTCTGCGGCCTAGATAACATTAGGAAGACATCACTTTATCCAC GTGACCCGAAAAGGATTGCGCCGTGA
Protein sequence (LotjaGi5g1v0052700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSEFQDPPPPPSEESQSKKAAKKEAAKLEKLRRRQELAAATSAASNLSVDDDPLAGNYGDVPLVELQSKTPVDVSDWT RVEALDASLADRAVQIRGRAQTIRPVGKKMAFLVVRENGFTVQCLVQAQPDVVSPQMVKFAAALNRESIIDVVGVVSVPA APIKGATQQVEIQVRKLYCVGRAVPTLPINLEDAARSDVEVEKALQAGDQLVRVNQDTRLNFRVLDLRTPANQGIFRIQS HVGNAFRQFLLKENFVEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTH RHLCEFTGLDVEMEIKKHYFEVMDVVDKLFVAMFDSLNQNCKKDLEAVGCQYPFEPLKYLRNTLRLTYEEGIQMLKEAGV EIEPFGDLNTEAERKLGKLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPAYTNSFDVFIRGEEIISGAQRIHVPDFLEE RAAACGIEVSTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLDNIRKTSLYPRDPKRIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 15 | 541 | 527 | 4.8E-262 | ||
| PANTHER | 15 | 541 | 527 | 4.8E-262 | – | |
| MobiDBLite | 18 | 38 | 21 | - | – | |
| Coils | 20 | 40 | 21 | - | – | |
| Gene3D | 52 | 187 | 136 | 1.3E-35 | – | |
| SUPERFAMILY | 58 | 186 | 129 | 1.08E-26 | ||
| Hamap | 77 | 541 | 465 | 39.043 | ||
| TIGRFAM | 88 | 541 | 454 | 7.1E-138 | ||
| CDD | 94 | 193 | 100 | 1.89546E-41 | – | |
| Gene3D | 188 | 541 | 354 | 3.1E-120 | – | |
| SUPERFAMILY | 212 | 540 | 329 | 1.82E-95 | – | |
| CDD | 213 | 537 | 325 | 1.07865E-167 | – | |
| Pfam | 216 | 534 | 319 | 8.4E-77 | ||
| ProSiteProfiles | 236 | 533 | 298 | 18.738 | ||
| PRINTS | 286 | 298 | 13 | 2.9E-22 | ||
| PRINTS | 303 | 316 | 14 | 2.9E-22 | ||
| PRINTS | 456 | 472 | 17 | 2.9E-22 | ||
| PRINTS | 496 | 510 | 15 | 2.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Aspartate-tRNA ligase activity | Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Aspartyl-tRNA aminoacylation | The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. The aspartyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an aspartic acid accetping tRNA. |
Expression pattern of LotjaGi5g1v0052700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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