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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004364
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.983s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000769.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr0 328159 328683 -
2 domain predictions
4 GO terms
Lj0g3v0190569.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr0 93148434 93153071 -
2 domain predictions
4 GO terms
Lj0g3v0296079.1
n.a. Asparaginyl-tRNA synthetase [Medicago truncatula] gi|357513179|ref|XP_003626878.1| chr0 153863335 153873524 +
2 domain predictions
4 GO terms
Lj0g3v0358409.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502162327|ref|XP_004512467.1| chr0 188656300 188660287 +
2 domain predictions
4 GO terms
Lj2g3v0878960.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356504551|ref|XP_003521059.1| chr2 13523356 13534951 +
2 domain predictions
4 GO terms
Lj2g3v3106130.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr2 39971149 39975627 +
2 domain predictions
4 GO terms
Lj3g3v2656760.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr3 32326609 32330106 +
2 domain predictions
4 GO terms
Lj4g3v1259110.1
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
2 domain predictions
4 GO terms
Lj4g3v1259110.2
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
2 domain predictions
4 GO terms
Lj4g3v2120450.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr4 29030056 29034971 +
2 domain predictions
4 GO terms
Lj4g3v3020560.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr4 40552556 40555467 -
2 domain predictions
4 GO terms
Lj4g3v3109640.1
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41370376 -
2 domain predictions
4 GO terms
Lj4g3v3109640.2
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41367484 -
2 domain predictions
4 GO terms
Lj5g3v0508080.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr5 4993524 4998002 -
2 domain predictions
4 GO terms
LotjaGi2g1v0226400.1
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TGE1|A0A151TGE1_CAJCA Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355387 68366781 +
2 domain predictions
4 GO terms
LotjaGi2g1v0226400.2
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TKF3|A0A072TKF3_MEDTR Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355993 68366608 +
2 domain predictions
4 GO terms
LotjaGi2g1v0226400.3
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TKF3|A0A072TKF3_MEDTR Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355993 68366608 +
2 domain predictions
4 GO terms
LotjaGi3g1v0268500.1
n.a. Asparagine-tRNA ligase; TAIR: AT3G07420.1 asparaginyl-tRNA synthetase 2; Swiss-Prot: sp|Q9SW95|SYNC2_ARATH Asparagine--tRNA ligase, cytoplasmic 2; TrEMBL-Plants: tr|G7LED0|G7LED0_MEDTR Asparagine-tRNA ligase; Found in the gene: LotjaGi3g1v0268500 LjG1.1_chr3 51551556 51560475 +
2 domain predictions
4 GO terms
LotjaGi3g1v0417100.1
n.a. Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|I1K622|I1K622_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417100 LjG1.1_chr3 82364758 82367788 -
2 domain predictions
4 GO terms
LotjaGi4g1v0203000.1
n.a. Asparagine-tRNA ligase; TAIR: AT4G17300.2 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JIW4|G7JIW4_MEDTR Asparagine-tRNA ligase; Found in the gene: LotjaGi4g1v0203000 LjG1.1_chr4 47008126 47017257 -
2 domain predictions
4 GO terms
LotjaGi4g1v0203000.2
n.a. Asparagine-tRNA ligase; TAIR: AT4G17300.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JIW4|G7JIW4_MEDTR Asparagine-tRNA ligase; Found in the gene: LotjaGi4g1v0203000 LjG1.1_chr4 47008710 47010082 -
2 domain predictions
4 GO terms
LotjaGi4g1v0302800.2
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi4g1v0302800 LjG1.1_chr4 67771733 67776268 +
2 domain predictions
4 GO terms
LotjaGi4g1v0302800.3
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1L9B1|I1L9B1_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi4g1v0302800 LjG1.1_chr4 67771766 67776268 +
2 domain predictions
4 GO terms
LotjaGi4g1v0302800.4
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase; TrEMBL-Plants: tr|A0A1J7IH24|A0A1J7IH24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302800 LjG1.1_chr4 67773817 67776287 +
2 domain predictions
4 GO terms
LotjaGi4g1v0442400.1
n.a. Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|I1K622|I1K622_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0442400 LjG1.1_chr4 81593994 81596684 -
2 domain predictions
4 GO terms
LotjaGi4g1v0442400.2
n.a. Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|V7CQ72|V7CQ72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0442400 LjG1.1_chr4 81593994 81596693 -
2 domain predictions
4 GO terms
LotjaGi4g1v0454600.1
n.a. Aspartate--tRNA ligase; TAIR: AT4G33760.1 tRNA synthetase class II (D, K and N) family protein; Swiss-Prot: sp|F4JJT9|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T3C0|A0A151T3C0_CAJCA Aspartyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0454600 LjG1.1_chr4 82631139 82643057 -
2 domain predictions
4 GO terms
LotjaGi4g1v0454600.2
n.a. Aspartate--tRNA ligase; TAIR: AT4G33760.1 tRNA synthetase class II (D, K and N) family protein; Swiss-Prot: sp|F4JJT9|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T3C0|A0A151T3C0_CAJCA Aspartyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0454600 LjG1.1_chr4 82638653 82642756 -
2 domain predictions
4 GO terms
LotjaGi5g1v0052700.1
n.a. Aspartate-tRNA ligase; TAIR: AT4G31180.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M084|SYDC2_ARATH Aspartate--tRNA ligase 2, cytoplasmic; TrEMBL-Plants: tr|I1M984|I1M984_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0052700 LjG1.1_chr5 8800965 8806123 -
2 domain predictions
4 GO terms
LotjaGi5g1v0052700.2
n.a. Aspartate-tRNA ligase; TAIR: AT4G31180.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M084|SYDC2_ARATH Aspartate--tRNA ligase 2, cytoplasmic; TrEMBL-Plants: tr|A0A0L9V226|A0A0L9V226_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0052700 LjG1.1_chr5 8801552 8804555 -
2 domain predictions
4 GO terms
LotjaGi6g1v0240700.1
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 LjG1.1_chr6 55230480 55238339 -
2 domain predictions
4 GO terms
LotjaGi6g1v0240700.2
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 LjG1.1_chr6 55232813 55237671 -
2 domain predictions
4 GO terms
LotjaGi6g1v0240700.3
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 LjG1.1_chr6 55232813 55238045 -
2 domain predictions
4 GO terms
LotjaGi6g1v0240700.4
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 LjG1.1_chr6 55232827 55234985 -
2 domain predictions
4 GO terms
LotjaGi6g1v0240700.5
n.a. Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 LjG1.1_chr6 55232851 55238075 -
2 domain predictions
4 GO terms