Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006195
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 93 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.873s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001799.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 500893 504848 -
2 domain predictions
 –
Lj0g3v0190569.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr0 93148434 93153071 -
2 domain predictions
 –
Lj0g3v0274769.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 142460730 142464602 +
2 domain predictions
 –
Lj0g3v0296119.1
n.a. PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1| chr0 153885500 153890210 +
2 domain predictions
 –
Lj0g3v0316529.1
n.a. PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] gi|356569020|ref|XP_003552705.1| chr0 165332214 165334273 -
2 domain predictions
 –
Lj0g3v0318599.1
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr0 166385765 166390591 +
2 domain predictions
 –
Lj0g3v0326999.1
n.a. PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] gi|356569020|ref|XP_003552705.1| chr0 170936878 170940076 -
2 domain predictions
 –
Lj0g3v0358409.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502162327|ref|XP_004512467.1| chr0 188656300 188660287 +
2 domain predictions
 –
Lj1g3v0054690.1
n.a. PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum] gi|502080886|ref|XP_004486713.1| chr1 641803 649767 -
2 domain predictions
 –
Lj1g3v1514800.1
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465107|ref|XP_003602835.1| chr1 18000084 18004494 -
2 domain predictions
 –
Lj1g3v1514800.2
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465105|ref|XP_003602834.1| chr1 18000084 18004494 -
2 domain predictions
 –
Lj1g3v3328940.1
n.a. PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1| chr1 37408733 37413097 +
2 domain predictions
 –
Lj1g3v4591200.1
n.a. PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1| chr1 54981260 54992780 +
2 domain predictions
 –
Lj1g3v4830240.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr1 58320838 58325597 -
2 domain predictions
 –
Lj2g3v0878960.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356504551|ref|XP_003521059.1| chr2 13523356 13534951 +
2 domain predictions
 –
Lj2g3v1378840.1
n.a. PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1| chr2 21766122 21773133 -
2 domain predictions
 –
Lj2g3v1378840.2
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr2 21766122 21774927 -
2 domain predictions
 –
Lj2g3v1468010.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr2 23284510 23286437 +
2 domain predictions
 –
Lj2g3v3106130.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr2 39971149 39975627 +
2 domain predictions
 –
Lj3g3v2656760.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr3 32326609 32330106 +
2 domain predictions
 –
Lj3g3v3348650.1
n.a. PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum] gi|502080886|ref|XP_004486713.1| chr3 41139554 41148251 +
2 domain predictions
 –
Lj4g3v1259110.1
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
2 domain predictions
 –
Lj4g3v1259110.2
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
2 domain predictions
 –
Lj4g3v2120450.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr4 29030056 29034971 +
2 domain predictions
 –
Lj4g3v3020560.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr4 40552556 40555467 -
2 domain predictions
 –
Lj4g3v3109640.1
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41370376 -
2 domain predictions
 –
Lj4g3v3109640.2
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41367484 -
2 domain predictions
 –
Lj4g3v3112980.1
n.a. PREDICTED: histidine--tRNA ligase-like [Cicer arietinum] gi|502122299|ref|XP_004497677.1| chr4 41487075 41493855 -
2 domain predictions
 –
Lj5g3v0508080.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr5 4993524 4998002 -
2 domain predictions
 –
Lj5g3v0656990.1
n.a. PREDICTED: histidine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502111238|ref|XP_004493995.1| chr5 8985722 8988300 -
2 domain predictions
 –
Lj5g3v1494610.1
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21638393 21651821 +
2 domain predictions
 –
Lj5g3v1494610.2
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21648241 21652187 +
2 domain predictions
 –
Lj5g3v1494610.3
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21648241 21651821 +
2 domain predictions
 –
LotjaGi1g1v0067400_LC.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151TGM6|A0A151TGM6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0067400_LC LjG1.1_chr1 9318052 9328828 +
2 domain predictions
 –
LotjaGi1g1v0247200_LC.1
n.a. Phenylalanine--tRNA ligase alpha subunit; TAIR: AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein; Swiss-Prot: sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A1J7HX04|A0A1J7HX04_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0247200_LC LjG1.1_chr1 59403507 59404711 -
2 domain predictions
 –
LotjaGi1g1v0339700.1
n.a. Serine--tRNA ligase; TAIR: AT1G11870.2 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80081035 80088101 +
2 domain predictions
 –
LotjaGi1g1v0339700.2
n.a. Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80081160 80085390 +
2 domain predictions
 –
LotjaGi1g1v0339700.3
n.a. Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 LjG1.1_chr1 80082329 80085425 +
2 domain predictions
 –
LotjaGi1g1v0551900.1
n.a. Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 LjG1.1_chr1 108326725 108331427 +
2 domain predictions
 –
LotjaGi1g1v0688700.1
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125607215 125627467 -
2 domain predictions
 –
LotjaGi1g1v0688700.2
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KFU0|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
 –
LotjaGi1g1v0688700.3
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
 –
LotjaGi1g1v0688700.4
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1JPP8|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125615819 125627346 -
2 domain predictions
 –
LotjaGi1g1v0688700.5
n.a. Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KFU0|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 LjG1.1_chr1 125618349 125627346 -
2 domain predictions
 –
LotjaGi1g1v0754600.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132761414 132767262 -
2 domain predictions
 –
LotjaGi1g1v0754600.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762655 132766913 -
2 domain predictions
 –
LotjaGi2g1v0122700.1
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130518 45136183 +
2 domain predictions
 –
LotjaGi2g1v0226400.1
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TGE1|A0A151TGE1_CAJCA Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355387 68366781 +
2 domain predictions
 –
LotjaGi2g1v0226400.2
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TKF3|A0A072TKF3_MEDTR Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355993 68366608 +
2 domain predictions
 –
LotjaGi2g1v0226400.3
n.a. Lysine--tRNA ligase; TAIR: AT3G13490.1 Lysyl-tRNA synthetase, class II; Swiss-Prot: sp|Q9LJE2|SYKM_ARATH Lysine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TKF3|A0A072TKF3_MEDTR Lysine--tRNA ligase; Found in the gene: LotjaGi2g1v0226400 LjG1.1_chr2 68355993 68366608 +
2 domain predictions
 –