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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0063000 |
| Transcript ID | LotjaGi5g1v0063000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|A0A0S3RNV9|A0A0S3RNV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0063000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10574606..10578605) extracted from Lotus japonicus Gifu genome v1.2.
TTGATTTTGTTTTGTTTTGTAAAGGTCGAAACGACATTGCTATTTTCCTGTTGTTGATGGAACGACCTGGGGTTTTCAAC AACAGTCAGCAGCATGTTATAGAAATAGCAGGGAGTGCTGAAGCTTCCACGTCCGCCGCGTCGCCTCGCGATAGACATTT TAACGGCGGTGCGGATGGATTGCGAAGTGAGGAAAGGATTAGCGGCTCGCGGGTGCCGGTTACTCAGCCTTCGGTGTCGG TGTCGACAACGTCCGGTGGAATGACGACGAATAGCAGGAGTTCTTCGCTTGTGAGGCGTGGGGACTCTAGACGGAATAGG AGTCCTGTGCATTCGGGGATATGGATATCGGTTGAGCTAGTGCTGTTAATGAGCCAGATTGTTGCGTCGATTGTTGTTTT GTCGATGTCGCGGCATGAGCACCCGCGTACCCCGTTGTTTCAGTGGATTGTTGGTTATGCCTGTGGATGTGCTGCTACGC TTCCTCTTCTATATTGGCGTTATTATCATCATAACCATATGCGAGAGCAAGAATCGCGCCAAACATCTCCTCGGGTTAAC GATCCTTCAGGGACACTTCTTTCCAGTTCCAGAATAAATGGAGGAGAGGATGCTCAAGCTGCTTCCTCCAGAAGCAATCA ACCTTCAATATTGGTGAATAGAAGGTAGTGAGTTGGTTGCTGATTTTGTTAAAAATGATTTTTTCGCTAAATGTTAGAAT CGCATCTTAAGGAAAGCTTAAATATTATGTTTGAAGGGCAAGATTTTAGATGCCATTTCAACTGTTTTTATCGTGCTTGA TAGGGAATGGTACATCCTCAAACGTTTGTGGCAAGCAGGCAAGCTTTGCATAGATGATTGTTCACAGTTTTATGTAATTT TGGATTCCTTTAGGCCATATTTGTGAGTTGAATTTTGGAGGGGAGAGAAGGGAAGGAGGAGGCTTATGAAACCCTCCCCT TGTTTCAGATATTTAAAAAGGGGGGGGGGGGTCTGGGGTACTCTAAAACCCACCATCCATTTGACTTTCTGAGTTCCCCC AATTTGGGGATTTTGAACTTACAAACAAGGGGAGAGCTTACCTCCTCCCTTGCCCTTCCCCTCGAAACATTTCCCTCCCC TCCCCTAAAAACCCCCAAACAAAGCCTTACGAGGATATGTTATCTTCTGATTGACTACTTAATTCTTTTTCTTGTCTAAA TATGTTACCATACTTGTCTTCCCCTTATTTCATTGATGTTTTGGTTACTTTTTCTGAATCATGAGTTGAAAATGAGTAAA AATTGTGCTTTACATGTCCAAATCAAATCATCATTTTGCTCATACCATCTCATGGCCTTAATCAATGTAATATGTGTAGT TTATTTTCCTAGCCCAAATTATTATTTAGCACTGTTCTATAGCCCTTTACTTCTTGATAGCTGGTAATGGGCAGTGAAAA TTACTTGGCACAAAAGGCCTAGGAAGGAAATCTAACTTAACTCTTAAGGTTGCACCCCAACAAAATCCTGTAAAGACCAC ATCAACTTAAATAGTAATTGGACTTTGAAGAGAAAAATATCTGTTCAGATAACTTTTGAGATCTAGAAAAATAAAGTTTT TAACTTCTGATTGTATTTCAAACTGATAATGCCCATCAAGCAATCAGGAGAAGCCTTTCTAGCAAACATCCTGTTATTAG AAAGCCATGCTCCCTCATGATTACAATGGTGCCATCACGCAGCAGGCTGTAATAGATAAAACTGAAGTACCTGGGGCAGT TATCTTGGTAATGAAGGAATATGTAGAATTGGCTGACTGGCCATTCCTGTTTCGTGAGGAATACATCAGAGTGATAGATA ATTCCTTCTTTTAGAATTAGGACTTTGTGTTGTGTATGTAGTTAGTTGATAGAATGATAGAATTTATTTCTCATCATATT TTTCTTTAAAATCTATTCTAATTTTTTTTTATCGTAATTAGAGTCTAAGGATACTTGTGAAACATACTCTTTATAAGTGG TATTTTATATGGTGATCAATCTCGTAAGCTGCTCGCAGCAGGTTATAGTAGGTCTTGGGGCATTATTTTAGGTAGTTTAG TTAGGATCTGATATATGGAATTTATATTAGAAGGGTGGAGCAAGAGCCCTTAAAAATTATATTTGGTTTTCTAGTTCCTT TGTATCAAACATTGATAAGGATGAAAGGTCCTGTATGAATTCATCATAGAGCTTAATATTTCTATAGTCCGTTTTACATT TGTTAAGCACCGGTTTCAGAGGCTAGAATATAATCAGAAATTTGAAAATTGACCCTAAGATGTATATTATTAATTTCAAA AACATGTTAGTCCTTAAATCCTACTTTTTAGCCTTGAGGAGGGGCTTTGACTTTCGACACTTTATGCTTCCCTTGCTCTT CTAGTAACCTAGCAAGATCAATAAAAAAGCATTAGAAGATGCTCCTGATGTATCCATGTCTTATGCTACATCCCTTTCGA GCTAACCAAACTATGAAATTGATGGATTACTTTGATCCTCACTATGACCATTGTCTCAATTTGAATGTAAACATATATTA ATGACTACAATCATCCATCATTTATCCGTTATTGAACTGATCAATTGTTGATAAATTTATGGTCTTGTTGATACCGGTTT CCACTGTATTGCTTTTTTTGGTGGATTCAATAGTTTGAATTTTGTAACTGAATGTCGTGAATACTGTAGTATCTGAATTT CTGCTTTGATGCTCAGAATTATATTAAGTTAATGTGCAAGTGTATTTAAAACTATTCATGGTTTGTTTGATACACACCTG TAAACAGACACTGGCATGCATTCCCACATGTATGTAAAATGTTAGTTTCAGGCATATGCATTCAACCTGCTTCCCCATGT AAATACAAACTGGATGTATTCAGTAATAGAAACTTCCTAGAAAACTCTTAATGACTGTTACAAAGTTAAATTTTTCTCTT ATTTAGTTTATATTTTTTGACTATGTCATGCTCATGGCCTTGTTATTCCCTCACTCCAATTTGGCAATTTCCATATTTAT TCATTAAGTTTTGAAATTTTAAACATCTGTTTCATGGTTATAATTTCTGAAAATTGTAATTTGAAATGAGTTCATTAAGC TGCTAAGCCCTAGTTCAATTCTTGCAACACAGAATGAAGACACTCGTGGAATACTTCAAAATATCCTTAGATTGCTTTTT TGCCGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCAGATGAAGCTCCTAACTTGTACAGGT ATAGCCTTTCATATGCTCTTACATTTAATATTCTAGTTTTTCAGATGCTCCAAATTAAATATGCTTCCTTTTGCTTGGCA GGTTATGCATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCAATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGT CTCCCTTGTATAATTTCCATCCTTGGGGTTAGGGAAGATCTGGCACAAAACCGAGGGGCAACTTCTGAGTCCATTAACGC TCTTCCGACTTACAAGTTCAAAATGAAAAAAAATAAAAGAAATAGTGAAAGCAACTCAGCTGCTGCGGAAAGTGGAGTTG TGGCTGCAGGAACTGAAAAAGAGCGGGTGATCTCTGGAGAAGATGCAGTGAGTATAATCTGATCTTTATGTATTCAGGAT ACTTACTTTAAACTTTGTAACATCCTGGCATTGTTTGCCAAGTTACACCACATCCAGTTATGTAAGAAGATTTTCATTGT CTGCAGGTTTGTTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCA CAAAGACTGCGTTGACAAGTGGTTAAAGATAAATGCATTATGCCCTCTTTGCAAGAGCGAGGTTGGTGAAAACATAACAG GATTGGTCTCTGGTGAAGATGCCAGCCAACAACGGGGTGAGAGCAGGGTTGAGAACGGCCTCGCCAATACCTCAGTTTAA
CDS sequence (LotjaGi5g1v0063000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACGACCTGGGGTTTTCAACAACAGTCAGCAGCATGTTATAGAAATAGCAGGGAGTGCTGAAGCTTCCACGTCCGC CGCGTCGCCTCGCGATAGACATTTTAACGGCGGTGCGGATGGATTGCGAAGTGAGGAAAGGATTAGCGGCTCGCGGGTGC CGGTTACTCAGCCTTCGGTGTCGGTGTCGACAACGTCCGGTGGAATGACGACGAATAGCAGGAGTTCTTCGCTTGTGAGG CGTGGGGACTCTAGACGGAATAGGAGTCCTGTGCATTCGGGGATATGGATATCGGTTGAGCTAGTGCTGTTAATGAGCCA GATTGTTGCGTCGATTGTTGTTTTGTCGATGTCGCGGCATGAGCACCCGCGTACCCCGTTGTTTCAGTGGATTGTTGGTT ATGCCTGTGGATGTGCTGCTACGCTTCCTCTTCTATATTGGCGTTATTATCATCATAACCATATGCGAGAGCAAGAATCG CGCCAAACATCTCCTCGGGTTAACGATCCTTCAGGGACACTTCTTTCCAGTTCCAGAATAAATGGAGGAGAGGATGCTCA AGCTGCTTCCTCCAGAAGCAATCAACCTTCAATATTGGTGAATAGAAGAATGAAGACACTCGTGGAATACTTCAAAATAT CCTTAGATTGCTTTTTTGCCGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCAGATGAAGCT CCTAACTTGTACAGGTTATGCATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCAATGCCCTTCATTCTCTGTTCAAC AATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGGGAAGATCTGGCACAAAACCGAGGGGCAACTTCTG AGTCCATTAACGCTCTTCCGACTTACAAGTTCAAAATGAAAAAAAATAAAAGAAATAGTGAAAGCAACTCAGCTGCTGCG GAAAGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGGGTGATCTCTGGAGAAGATGCAGTTTGTTGCATCTGCCTGGC AAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGACAAGTGGTTAA AGATAAATGCATTATGCCCTCTTTGCAAGAGCGAGGTTGGTGAAAACATAACAGGATTGGTCTCTGGTGAAGATGCCAGC CAACAACGGGGTGAGAGCAGGGTTGAGAACGGCCTCGCCAATACCTCAGTTTAA
Protein sequence (LotjaGi5g1v0063000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERPGVFNNSQQHVIEIAGSAEASTSAASPRDRHFNGGADGLRSEERISGSRVPVTQPSVSVSTTSGGMTTNSRSSSLVR RGDSRRNRSPVHSGIWISVELVLLMSQIVASIVVLSMSRHEHPRTPLFQWIVGYACGCAATLPLLYWRYYHHNHMREQES RQTSPRVNDPSGTLLSSSRINGGEDAQAASSRSNQPSILVNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEA PNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLAQNRGATSESINALPTYKFKMKKNKRNSESNSAAA ESGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENITGLVSGEDAS QQRGESRVENGLANTSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.1E-240 | – | |
| PANTHER | 1 | 404 | 404 | 1.1E-240 | – | |
| Phobius | 1 | 94 | 94 | - | – | |
| MobiDBLite | 19 | 90 | 72 | - | – | |
| MobiDBLite | 50 | 78 | 29 | - | – | |
| Phobius | 95 | 115 | 21 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 127 | 147 | 21 | - | – | |
| Phobius | 148 | 209 | 62 | - | – | |
| Phobius | 210 | 231 | 22 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 232 | 242 | 11 | - | – | |
| Phobius | 243 | 276 | 34 | - | – | |
| TMHMM | 248 | 281 | 34 | - | – | |
| Phobius | 277 | 417 | 141 | - | – | |
| Gene3D | 326 | 394 | 69 | 6.8E-19 | ||
| SUPERFAMILY | 333 | 389 | 57 | 1.28E-20 | – | |
| CDD | 341 | 383 | 43 | 7.66244E-19 | – | |
| SMART | 342 | 382 | 41 | 4.7E-7 | ||
| ProSiteProfiles | 342 | 383 | 42 | 12.504 | ||
| Pfam | 342 | 383 | 42 | 1.1E-12 | ||
| MobiDBLite | 397 | 417 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0063000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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