Domain Predictions — View

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cd16474

Source: CDD

Description

RING-H2_RNF111_like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 17

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0389500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|I1JUI4\|I1JUI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389500	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF10 SM00184 SM00744 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	17
LotjaGi1g1v0389500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|I1JUI4\|I1JUI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389500	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF10 SM00184 SM00744 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	17
LotjaGi1g1v0467700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase family; TAIR: AT3G61180.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|I1L6R5\|I1L6R5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0467700	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF18 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	14
LotjaGi1g1v0656500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|K7MY22\|K7MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0656500	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF19 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	14
LotjaGi1g1v0656500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|K7MY22\|K7MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0656500	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF19 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	18
LotjaGi2g1v0432200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase family; TAIR: AT1G12760.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp\|Q9LN71\|RING1_ARATH E3 ubiquitin-protein ligase At1g12760; TrEMBL-Plants: tr\|A0A151TJP1\|A0A151TJP1_CAJCA E3 ubiquitin-protein ligase family; Found in the gene: LotjaGi2g1v0432200	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF12 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	14
LotjaGi3g1v0014600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G80400.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A0B2SIJ0\|A0A0B2SIJ0_GLYSO E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0014600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF4 SM00184 SM00744 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	17
LotjaGi3g1v0014600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G80400.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A0B2SIJ0\|A0A0B2SIJ0_GLYSO E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0014600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF4 SM00184 SM00744 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	17
LotjaGi4g1v0221400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase family; TAIR: AT4G11680.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A072UPE3\|A0A072UPE3_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi4g1v0221400	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF12 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	15
LotjaGi4g1v0221400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase family; TAIR: AT1G12760.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp\|Q9LN71\|RING1_ARATH E3 ubiquitin-protein ligase At1g12760; TrEMBL-Plants: tr\|A0A072UPE3\|A0A072UPE3_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi4g1v0221400	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR45977 PTHR45977:SF12 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	14
LotjaGi4g1v0235100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp\|Q8GYT9\|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr\|A0A072UPV9\|A0A072UPV9_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR47179 PTHR47179:SF2 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	15
LotjaGi4g1v0235100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp\|Q8GYT9\|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr\|A0A072UPV9\|A0A072UPV9_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13639 PS50089 PTHR47179 PTHR47179:SF2 SM00184 SSF57850 cd16474 mobidb-lite	11
LotjaGi4g1v0235100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp\|Q8GYT9\|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr\|A0A072V189\|A0A072V189_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR47179 PTHR47179:SF2 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	15
LotjaGi5g1v0063000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A0S3RNV9\|A0A0S3RNV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0063000	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF10 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	15
LotjaGi5g1v0063000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|A0A0S3RNV9\|A0A0S3RNV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0063000	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF10 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474 mobidb-lite	15
LotjaGi6g1v0140600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G55970.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q8GUU2\|RIE1_ARATH E3 ubiquitin protein ligase RIE1; TrEMBL-Plants: tr\|I1N083\|I1N083_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0140600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF1 SM00184 SSF57850 SignalP-TM TMhelix TRANSMEMBRANE cd16474 mobidb-lite	16
LotjaGi6g1v0140600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT5G55970.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q93Z92\|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr\|I1N083\|I1N083_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0140600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR46225 PTHR46225:SF1 SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16474	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16474	CDD	1	5.88