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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0068400 |
Transcript ID | LotjaGi5g1v0068400.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Actin-depolymerizing factor; TAIR: AT5G59890.1 actin depolymerizing factor 4; Swiss-Prot: sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2; TrEMBL-Plants: tr|I3T8B9|I3T8B9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0068400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11348764..11351088) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAAAATTACATTCCCCTCAAATATTCCCCCGTCCAAACACAACCTTAGAAAATTTAAAATCAAATTGAGAATAATTT GACCATTAATTCTAATCGGAAGAAGTAGCCAAGTCGAGAAGGAGAAGCAATGTGAAAATTCCAAAAAGCAGTCTTACTAG CACACGTTTTTAACTCAACACGACAAGTGGATTCGCTGATTCTCCTTCACAATTTTACAATACCATATAAATTCAATTTC AATTTTCAGGGACTCCACTCCTCCATTATCTATCAACAACAATTCGTATTCGTATTCTCATTCCTTGCACGCACGCACGA TAAACAGAACAAGAACCATTCCTATATTTCCGACGAAAATTCCGAACGCAAAAAAAATGGTTAGTTTTCGTTTTTTCGTT TGATTGTTCTTCCTCTGTTGTTCTGTGTAACTCGGAATCACAAAAAATCACAGGAAACTGAACTGAACAAAAATCACCTC GAAATTCATTGTCTGGTTATTTTTGTTTTCAGCAGTTACTGATTCTGTTTCTGTTGAGTTTGCGGTCGATCTGGCTGAAC AGTGAAGAATCGAATGATTGATTATTCATGAGTTTTTCTCATTAACTGTTTATGTGTTTCTCTCTAGCTGATAGATAGAT ATGATTTTTTTATATGGATTTCATTTCAGTGTTAAATATTGTATCGCATTGTTGTTTAAGTGAACTGTTTGGGTTTGGAT TACTTGATTGTGATAGCGTGTGGTTGGTTTGCTTCATCTCATTCATAAGTTACTTTCATAAGCGCTTATGCTATAAGATT GATTCAAATAAGCTCTTCCGAACAGGGCCTTATTTGCTCTTTCCATGTGTTTATCTCTCAAAATTATTCATTATATTCCT TGTTCTTCATTCATCATAGGCCAAGTGATGGTATGGAGTTTAATCTTGTTGCTCATTATCTAAACAAAAGTTTAATTTAA GCACAATATACACAAGCCTGTGTTGTCCATGTCCACCCAAGAGTTAGTTGGGCATTCTTTTGTTAGACATATAATATAGA ACCATTTATCTGTCTTGACTCAACACCTTAAGGTTATGCTTAATCTTATAATCCTTGTGTTAACTGCCCACTTCTTTTTG ATTCATATGCATTTGTGTGAAATTTACAGGCGAATGCAGTATCAGGTATGGCTGTGGATGACGACTGCAAGTTGAAGTTT TTGGAGCTCAAAGCGAAAAGGACATATCGGTTCATCGTTTTTAAGATTGAGGAGAAGCAGAAGCAAGTTGTTGTGGAGAA GCTTGGTGAGCCAGCAAATGGTTATGATGATTTCACTGCGAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATT TTGATTTTGTCACTGAAGAGAATTGCCAGAAAAGCAGGATTTTCTTCATTGCATGGTAATAACTTTTTAGCTTTTATTCA AACAAAGCAACGGTTGCGTTTGGAAAAATTCCACATTTTCTGATAATTGATTTTGATGCTTTTATTTGAAGGTCCCCTGA TACTTCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAAAGACAGATTCAAGAGGGAGCTTGATGGAATTCAAGTTG AGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGTTCAACAGCCGAGTCAATTAAACGATTGTGATTATGAAT AGTAGGTATTGTGATGGGGAGTTCCCTCCAGCCTTACTTACTCCTATGGAGGTGTCTATAGTTCGTGGGATTGTCAATTT GGCTAATTGCAGACTCGATTGTCCAAGTGTTGACATGAAATATATTGTAGTACCTAAAACAAGCAACTCTTATTGGAGTT GATATTGTGGTTTGTGACTTGTGCAATCTGTGTTTGGGTGTCTATGCTAACTAATTAATTTTGTAACTGGTTCTTCTGTG GCCGGATAAAAATTTGGGGTCAGCTATTCATGTGATATTGACACTTGCTATTTTACTGATACTTTACATACTTCAGTTGC CTGAAATACTTCTTTGAAGAATGATGTGTTAAGACATTAGATCGAACTAAGTTAACCATTGTTTTCTGAATGCAAACATA TAGTTGAACCGGCGTTTATGTGTAAGAAAAACATTCCATCTGTGTTTTTTTTCCTGTTTATTGGAGAGTAAAAGTTACTT TTACAAATATAGCTCATTTCATAGGATTTAGATAAAATATAAGTGTGACTATATTAAACGATATATGGTTCTTTCTCACT TTGTGGTCTTCAGGAGTAAGTGTAACCTTCTCGTGTTTACGAGTTAAGTACTACTGATAATATAAGGATGAATCTTGAAT CTTCA
CDS sequence (LotjaGi5g1v0068400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATGCAGTATCAGGTATGGCTGTGGATGACGACTGCAAGTTGAAGTTTTTGGAGCTCAAAGCGAAAAGGACATA TCGGTTCATCGTTTTTAAGATTGAGGAGAAGCAGAAGCAAGTTGTTGTGGAGAAGCTTGGTGAGCCAGCAAATGGTTATG ATGATTTCACTGCGAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAAGAGAATTGC CAGAAAAGCAGGATTTTCTTCATTGCATGGTCCCCTGATACTTCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAA AGACAGATTCAAGAGGGAGCTTGATGGAATTCAAGTTGAGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGT TCAACAGCCGAGTCAATTAA
Protein sequence (LotjaGi5g1v0068400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANAVSGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPANGYDDFTASLPADECRYAVYDFDFVTEENC QKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFNSRVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 139 | 139 | 5.1E-51 | ||
SUPERFAMILY | 2 | 138 | 137 | 2.29E-45 | – | |
PANTHER | 2 | 139 | 138 | 9.1E-124 | – | |
PANTHER | 2 | 139 | 138 | 9.1E-124 | ||
CDD | 6 | 138 | 133 | 9.65101E-66 | ||
ProSiteProfiles | 7 | 139 | 133 | 38.797 | ||
SMART | 12 | 139 | 128 | 5.7E-60 | ||
Pfam | 14 | 134 | 121 | 5.8E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi5g1v0068400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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