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LotjaGi5g1v0068400.1

Overview

Field Value
Gene ID LotjaGi5g1v0068400
Transcript ID LotjaGi5g1v0068400.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Actin-depolymerizing factor; TAIR: AT5G59890.1 actin depolymerizing factor 4; Swiss-Prot: sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2; TrEMBL-Plants: tr|I3T8B9|I3T8B9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0068400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:11348764..11351088) extracted from Lotus japonicus Gifu genome v1.2.

CTCTAAAATTACATTCCCCTCAAATATTCCCCCGTCCAAACACAACCTTAGAAAATTTAAAATCAAATTGAGAATAATTT GACCATTAATTCTAATCGGAAGAAGTAGCCAAGTCGAGAAGGAGAAGCAATGTGAAAATTCCAAAAAGCAGTCTTACTAG CACACGTTTTTAACTCAACACGACAAGTGGATTCGCTGATTCTCCTTCACAATTTTACAATACCATATAAATTCAATTTC AATTTTCAGGGACTCCACTCCTCCATTATCTATCAACAACAATTCGTATTCGTATTCTCATTCCTTGCACGCACGCACGA TAAACAGAACAAGAACCATTCCTATATTTCCGACGAAAATTCCGAACGCAAAAAAAATGGTTAGTTTTCGTTTTTTCGTT TGATTGTTCTTCCTCTGTTGTTCTGTGTAACTCGGAATCACAAAAAATCACAGGAAACTGAACTGAACAAAAATCACCTC GAAATTCATTGTCTGGTTATTTTTGTTTTCAGCAGTTACTGATTCTGTTTCTGTTGAGTTTGCGGTCGATCTGGCTGAAC AGTGAAGAATCGAATGATTGATTATTCATGAGTTTTTCTCATTAACTGTTTATGTGTTTCTCTCTAGCTGATAGATAGAT ATGATTTTTTTATATGGATTTCATTTCAGTGTTAAATATTGTATCGCATTGTTGTTTAAGTGAACTGTTTGGGTTTGGAT TACTTGATTGTGATAGCGTGTGGTTGGTTTGCTTCATCTCATTCATAAGTTACTTTCATAAGCGCTTATGCTATAAGATT GATTCAAATAAGCTCTTCCGAACAGGGCCTTATTTGCTCTTTCCATGTGTTTATCTCTCAAAATTATTCATTATATTCCT TGTTCTTCATTCATCATAGGCCAAGTGATGGTATGGAGTTTAATCTTGTTGCTCATTATCTAAACAAAAGTTTAATTTAA GCACAATATACACAAGCCTGTGTTGTCCATGTCCACCCAAGAGTTAGTTGGGCATTCTTTTGTTAGACATATAATATAGA ACCATTTATCTGTCTTGACTCAACACCTTAAGGTTATGCTTAATCTTATAATCCTTGTGTTAACTGCCCACTTCTTTTTG ATTCATATGCATTTGTGTGAAATTTACAGGCGAATGCAGTATCAGGTATGGCTGTGGATGACGACTGCAAGTTGAAGTTT TTGGAGCTCAAAGCGAAAAGGACATATCGGTTCATCGTTTTTAAGATTGAGGAGAAGCAGAAGCAAGTTGTTGTGGAGAA GCTTGGTGAGCCAGCAAATGGTTATGATGATTTCACTGCGAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATT TTGATTTTGTCACTGAAGAGAATTGCCAGAAAAGCAGGATTTTCTTCATTGCATGGTAATAACTTTTTAGCTTTTATTCA AACAAAGCAACGGTTGCGTTTGGAAAAATTCCACATTTTCTGATAATTGATTTTGATGCTTTTATTTGAAGGTCCCCTGA TACTTCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAAAGACAGATTCAAGAGGGAGCTTGATGGAATTCAAGTTG AGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGTTCAACAGCCGAGTCAATTAAACGATTGTGATTATGAAT AGTAGGTATTGTGATGGGGAGTTCCCTCCAGCCTTACTTACTCCTATGGAGGTGTCTATAGTTCGTGGGATTGTCAATTT GGCTAATTGCAGACTCGATTGTCCAAGTGTTGACATGAAATATATTGTAGTACCTAAAACAAGCAACTCTTATTGGAGTT GATATTGTGGTTTGTGACTTGTGCAATCTGTGTTTGGGTGTCTATGCTAACTAATTAATTTTGTAACTGGTTCTTCTGTG GCCGGATAAAAATTTGGGGTCAGCTATTCATGTGATATTGACACTTGCTATTTTACTGATACTTTACATACTTCAGTTGC CTGAAATACTTCTTTGAAGAATGATGTGTTAAGACATTAGATCGAACTAAGTTAACCATTGTTTTCTGAATGCAAACATA TAGTTGAACCGGCGTTTATGTGTAAGAAAAACATTCCATCTGTGTTTTTTTTCCTGTTTATTGGAGAGTAAAAGTTACTT TTACAAATATAGCTCATTTCATAGGATTTAGATAAAATATAAGTGTGACTATATTAAACGATATATGGTTCTTTCTCACT TTGTGGTCTTCAGGAGTAAGTGTAACCTTCTCGTGTTTACGAGTTAAGTACTACTGATAATATAAGGATGAATCTTGAAT CTTCA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0068400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAATGCAGTATCAGGTATGGCTGTGGATGACGACTGCAAGTTGAAGTTTTTGGAGCTCAAAGCGAAAAGGACATA TCGGTTCATCGTTTTTAAGATTGAGGAGAAGCAGAAGCAAGTTGTTGTGGAGAAGCTTGGTGAGCCAGCAAATGGTTATG ATGATTTCACTGCGAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAAGAGAATTGC CAGAAAAGCAGGATTTTCTTCATTGCATGGTCCCCTGATACTTCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAA AGACAGATTCAAGAGGGAGCTTGATGGAATTCAAGTTGAGTTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGT TCAACAGCCGAGTCAATTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0068400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANAVSGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPANGYDDFTASLPADECRYAVYDFDFVTEENC QKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFNSRVN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.20.10
1 139 139 5.1E-51
IPR029006
SUPERFAMILY
SSF55753
2 138 137 2.29E-45 –
PANTHER
PTHR11913:SF74
2 139 138 9.1E-124 –
PANTHER
PTHR11913
2 139 138 9.1E-124
IPR017904
CDD
cd11286
6 138 133 9.65101E-66
IPR017904
ProSiteProfiles
PS51263
7 139 133 38.797
IPR002108
SMART
SM00102
12 139 128 5.7E-60
IPR002108
Pfam
PF00241
14 134 121 5.8E-37
IPR002108

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003779
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Subterm of
GO:0015629
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Subterm of
GO:0030042
Biological process Actin filament depolymerization Disassembly of actin filaments by the removal of actin monomers from a filament.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0068400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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