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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0099300 |
Transcript ID | LotjaGi5g1v0099300.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|K7K9Q0|K7K9Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17833188..17838781) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCCTCCCTTATTTTCAATGTCAAGATATCCTCTTTTGTCATTTATGAGTTTTAGCTCCACCAAATGCATTGGGTAGG TGTGTAACTCTAAACATGTGCCATGTCATCATCTGACTATCTGAATCAATTTTTGGCAGACAAATTTTCCCGAATACCAG GGACCTGAGAAGATTGTCATCCGGCGATACAGTGACTTCATTTGGCTACGCGATCGCCTTTTTGAGAAGTACAAAGGCAT TTTTATCCCCCCTCTTCCAGAGAAAAGTGCTGTAGGTAACATCTAAGAGTACTCTTACTTGCATGTTTAATAATAGTTTG AGACGTCCATTCGAATTTTTATGCCAATGCTACCTTATAAATCTTTCAAAGCTTTATCTTCCTGCTTATGTTGATTTTCT GAAATTATTGTCTTTTGTTATTGTAATGAAAACATCTTAATTGAGGGGAACTGCTGTATTTTCCCATGTGAAAAAAAATT AAGATATTTTTCATTAAGTTAACTTTGGAAGCATCCGGTCATCTGTTTGCCTTTTTATTGTTGCAGAGAAATTTCGTTTC AGTGCTGAATTTATTGAGATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACA AAGTGAGGACCTGAGGGTGTTTTTGCAGGCAGAAGAAGAGGTGATGCCTCATGCCTCTATGCATCTGTATCTATCTTATA TGTGATTGATTGGCTTTGTTGCTCTTACTTTTCGTTTCTGCTTCCGTTGCTGTGCCATGTTACTCCACTGTTTGTTGTTT GATTCCAAATGTTCTAAACAGTTATCAGTATCTTACGATACATATCTCGATAAGATACAAATTCTTGAGGTAGTGATGCG TATCGCAGTGTTAATCTAAAATGAACCTGAATCTCATTTCTTATCTATGAGTTAGAGCTAAATTTTACAATTCACTAGTC CTTGTTGAATCTTACGATTCTAAATTGTGTGCATGTTGCACTTTAGTCGGGTTGTGTGGCCCATATAGGTTTCTGGTGTT TCTTGAGAAGAGTTTTTAAGTTTTTTGCATGGCCCATATAGGTTGCGTGGCCCACACGACTAATATTGCTGTGACCTAGT GTTGACCTTGGGGATGATGAATGATTCAATTAGTTAGCCGACTAACTATAGGAAGTAGGAAAGTAATTTGCATTTTGTCA TCTTATTGATGTTTTTTGGAGGGTTTGAGTACTTAAATTTTGTGCAAGCACCCACAAATTTCCTTCTTATTTTGATTTAT GGCTTGGATCTTGTATTATTTTAAGGTTAATTATATGATATATCAGCTTATGTTTCAATTTATGACTTAATTTTTTTGTA CCATGTATCTTCCGATACATAAAAAGATTGGATTCACGATTGGGAAAATAGGTCTTCCAATTTACGATTCGTATCTCAAC TTAATAACCATTTCTATTTAGTCTAAGACTTACATTTTGTCTACATTAATTGTTTTGTTTTGATGATGAGTTTGCTGAAT TTACTGTCAAATGCATGATTCCAAATTTTATGACTTATATTAGTGATTGATATATGGAAAATTGAATTATGCCTTATGGT TGCTGATTCCATAACTACCTACCTTATAATCACTGTACATGGTGGATAGTATGGGATATGTGATGTGCAAGACTTATAAT ACCTTTCCCATCCTCTCCCGTGTACGATGTAGGTGTATCTGTCAGTGTTTTCAATCTCTTACTATAGCGCTACATTTGTT GTCAATCCCGGCGGGATCCTATCCCATCCCAGCGATAACCTGGGATAACTTTTCCCATTCCAGCCTAGAACGTTGTCGCT GCCAAAATCGTGGCCTATCCCGCACGGTCGTGATTCTCCGTTTTTTTTTTTCTTTCTGAACTCCTGTTTTCCTAAAATAC CTTTAATATCAAAACATTGGGGATTATATTTTAAGGGTATTTCTGGGTTTACCCTACGAGATAAAACCCTAAAATCTTCA CACTCGCCAATTCCTTCTCACACAACTCTTTCAGGCTGCCCTTCCCTCTCTCTCTCTCCCCTTTCCCTCTCTCTCCTTCC CTCTCATCGCCGCTGATCTGTGAAGCACCAGGACCAGCCGGCAACCACCGCGCGACTCTGGCGAGCTTCTTGTAAGGTAG TTTCTCCTTGCTTCTCCTCTCCTCTGTCATGTTTTATTTCCTCTGCTCTGTTTTTCGTAGTTCCTCTCCTCTGTTCTCTT CTCTGTTCTCCTCTCTCTGTTATGACTTTAGTATTTAAGTAGCTCAGTATCGTGTATGATTTTCTTTTTAGTTCTAGCCC TATTAGGACTTTAATTGCTAGTTTGCTACTATGAAAGTATGCATATATTATGAATTTCAAGTAACATTTATCATTGATTT AGTATGTACATATATATGGTATTATACAAAATATAGACAAAAATTCAATACCCCAGCTATTCCGCTTTCCGGGATCCGGC TAACCCAGTTTTGGGGCTGACTGGGACGGGCTGGGAACTGGGATTGATAACATAGGCGCTGCTGCAGTGGCGGAGCAGCT GTCTTCTGCGACAAAAAGGGGGATGGCGGAGCGCATCGCTGTCGCGACCTTGAAGGCGCGATTGCAGTCTGAGTCGCTGT CGTTGCGGCGCTATCAGTGTGCAGTGCTGCTTCTCTTTCAGGAAACCCTGTTTTACCCTTATAATGATACTGTTAGGGGA ACATTTAAGGGTATAATGGGTAATTCATGCTCAGGTTCTTCCCAGTGCGCAGCCCTTGATCTCCTTTCTTCCTTGAATCC AGCAAGCTGCAACTTTGACCTGACTCGAGGACTTCCGGCAAGCCTCCATCTCCCTTCTTCCTCCAGCATCCTTGCTACTC TGTTTTGTCTCTCTCTTATTTTATTTTTTTCCTTTCAGTCTTATTTCTCTGTTTTTTTTTTGGTCGACAGGGTTATTTCT ATAAGTCTATATTGTATATCTTTTATCCCATTAGCGTCTATCTATTTTTAATATATCCCCATAGCCTCCCTGTTCTTTGA CTATTAATTATGAATGTCTCAATTTCATAAAATTTGAGTACCTTTTGTCATTTTTGAGCAATTATGTGTATATTATAGTT TATAGTTTTTATAAAATATATCGGAAAATTCAGCTTAGTGGTCATCCCGCTATGCGCTATACTGCTATAGCGGTTTTGGG TCGGCCGCTACGTGCTGCTATCCGGAATTGAAAACACTGGTATCTATTGTATTTGTATCTTATCTAGTTCTTCTCTTTTT ATCACATTTGACTTTTAAGAGGTAAAAGAAAAATCTTATTAAAGCTTGATTTGATTATACATACTATGCAGACAATGGAA AGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCAGCTGATTTAGTGCAGATATTTAAGGTAAGACATGTTTG AATGGTATTTTGGAATATTGATTCATTTTATTTTACTAGATTGAAGTCTGTTAATTGGAGTAATTTTAAAATTTGAATTC CAATAGTTTCCTGTCTGAAATAACCTGGCAAGGGGTGTTTTTTTAGTCCTTAGTCTTAGTAGCTAAATTATCAGAAATAA TGAAAAGAAACATGATGTATTTTTTTAAATATTTGATTTTGCTAACCTATCTGGTTGAGCGTGCTGTACGTTCAGGCGTT TTTTTCGATTTGTAATTGCTTATGTAAATTCTGGCAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGA AGCCAGTGGAGGAATCAAATCCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCT CAAAAACATGCATATCGTCTTGTGAAGAGGCATAGAGGTGATGTTTGAATTTAAGATTTCATTTTGGTAATTATTATTGT CTTCTGTGTCTATTTCACTTTCTGTTTTACTCATCTATGCTTACTTTTACATTTTATCCACTCTTTTGGCTAGATTAATT CATAACAAAAATTGTAATTTATAACTCATGCAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTA GGTGCCTCTGAAGGAAATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCA AAAGGAGGTAAGTGTCCAAGTGTTGGTGTCGTACGTTATTTTACTGGTTATTCATATATGGGTGCTTGCATGTTGAGAGG GGTGATAAGAACTATCCTAATATGACTCTGTCAAGCAGGCACAACAGCTCTTGATGGATTTTGAAGAACCTTTGAAAGAT TATGTCCGTGCTGTACAATCTATTAAGGTAGGTCTAGTTTTTGTTTTCCTTCATTATTTAGTAAGTAAATTGTATAACCT GATTAAGATATTGTTTGTGAATTTTCCTTTGTTAAACAATTATTCAGATATTTGAATCCTAACATTTTTTCTTTTCCAAC CGCCTTACCCTGAGAGTGAATGGATTGTTACACCTTATTTTTCAACTCAATACTCTTGTTTTACATTCTGAAACAGGCAA CAATCGCAGAGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTGTAT GGTTCTATTACTTGACTAACGTAGTTCGTAAGGCAGAATAATTTCTTTTTTACATAGCATTCCTTTCCCCCTACTAAAAC CCTTGTGTGTATGTAAATGCAGATAAGCCTTGGTTGTGTCTTGTATTGTGGAATATGTAAAAATTCACTTAGTGTTTGGT AAATAGCGGGGTAAAAATCTCTCCACTGCAAGATTTGGGGATTTGAAGGGAATAGAAAATGATTTACAATTTAGGAACTG TATTGACTACAATATCCTTGTATATTTTTTAATTTTCAAAACAGTCCTTATGTATATTAATACCTAGCTATGCCCCCATG CTACTTCATGCTTCTTCACTCTCACATAGGTCAAGCCTTAGTTATATGCTTTTTTTATATCACTTCTTCTATTTTGTTTT ATCACCTTCTAGAAGGATACATTTGTAAAATTACTGTTCTGTTGCCTCCCCTCCCCTTACACCCCAAACAATAGGAGGCT TATTTTCCTTCCCCTCTTCTCCCCTTTTGGCTGATGCCTGATTGTTTACAGAACCTAGAGGACTGACTACTTGGTGTTTT TATTCTGATTTAAATTTTTCGTTGTTGTTTCGAATCCAGTGACAAACTCATGTTGATTCGGTCTGATAGAGTTGCAGAAG CTGAACGTGAATATAACGAGGTAAATTTGCTAACATTTGGCATCCATTGATGAAAACTTATGCATACAGTTTGTTGGCTG GACTGATATGATTTTGTCATACAGTTGAAGGCAGAGAGTGAACAAGCAACAAAGACATTTGAGACAATTGTAAAGTTAAT GAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTTTCCATGAATTTGCTAAAGGCCAGG CACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAAGCATGTTCCTCCTCATAA
CDS sequence (LotjaGi5g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACCTGAGGGT GTTTTTGCAGGCAGAAGAAGAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCAGCTGATT TAGTGCAGATATTTAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGAATCAAAT CCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCATATCGTCT TGTGAAGAGGCATAGAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCTGAAGGAA ATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGCACAACAG CTCTTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGGCAACAATCGCAGAGAGGGC CAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTTGACAAACTCATGTTGATTC GGTCTGATAGAGTTGCAGAAGCTGAACGTGAATATAACGAGTTGAAGGCAGAGAGTGAACAAGCAACAAAGACATTTGAG ACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTTTCCATGA ATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAAGCATGTT CCTCCTCATAA
Protein sequence (LotjaGi5g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRQALDIFVNRIASHHELQQSEDLRVFLQAEEETMERLRSHETGIFKKKPADLVQIFKDVQSKVSDVVLGKEKPVEESN PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLADFGKAVKLLGASEGNALGKAFSELGIKSEILSAKLQKEAQQ LLMDFEEPLKDYVRAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDRVAEAEREYNELKAESEQATKTFE TIVKLMNEEIGRFQEQKTLDMGIAFHEFAKGQARLANGIAEAWRSLLPKLEACSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 295 | 295 | 6.0E-93 | – | |
Gene3D | 1 | 53 | 53 | 2.1E-6 | ||
PANTHER | 1 | 295 | 295 | 6.0E-93 | ||
SUPERFAMILY | 2 | 33 | 32 | 5.23E-5 | ||
Pfam | 64 | 288 | 225 | 2.5E-25 | ||
Gene3D | 75 | 293 | 219 | 1.7E-42 | ||
CDD | 78 | 288 | 211 | 1.90345E-49 | – | |
SUPERFAMILY | 80 | 294 | 215 | 1.07E-11 | ||
Coils | 211 | 238 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Phosphatidylinositol binding | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
Expression pattern of LotjaGi5g1v0099300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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