Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0099300.2

Overview

Field Value
Gene ID LotjaGi5g1v0099300
Transcript ID LotjaGi5g1v0099300.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|K7K9Q0|K7K9Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0099300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:17833188..17838781) extracted from Lotus japonicus Gifu genome v1.2.

ATTTCCTCCCTTATTTTCAATGTCAAGATATCCTCTTTTGTCATTTATGAGTTTTAGCTCCACCAAATGCATTGGGTAGG TGTGTAACTCTAAACATGTGCCATGTCATCATCTGACTATCTGAATCAATTTTTGGCAGACAAATTTTCCCGAATACCAG GGACCTGAGAAGATTGTCATCCGGCGATACAGTGACTTCATTTGGCTACGCGATCGCCTTTTTGAGAAGTACAAAGGCAT TTTTATCCCCCCTCTTCCAGAGAAAAGTGCTGTAGGTAACATCTAAGAGTACTCTTACTTGCATGTTTAATAATAGTTTG AGACGTCCATTCGAATTTTTATGCCAATGCTACCTTATAAATCTTTCAAAGCTTTATCTTCCTGCTTATGTTGATTTTCT GAAATTATTGTCTTTTGTTATTGTAATGAAAACATCTTAATTGAGGGGAACTGCTGTATTTTCCCATGTGAAAAAAAATT AAGATATTTTTCATTAAGTTAACTTTGGAAGCATCCGGTCATCTGTTTGCCTTTTTATTGTTGCAGAGAAATTTCGTTTC AGTGCTGAATTTATTGAGATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACA AAGTGAGGACCTGAGGGTGTTTTTGCAGGCAGAAGAAGAGGTGATGCCTCATGCCTCTATGCATCTGTATCTATCTTATA TGTGATTGATTGGCTTTGTTGCTCTTACTTTTCGTTTCTGCTTCCGTTGCTGTGCCATGTTACTCCACTGTTTGTTGTTT GATTCCAAATGTTCTAAACAGTTATCAGTATCTTACGATACATATCTCGATAAGATACAAATTCTTGAGGTAGTGATGCG TATCGCAGTGTTAATCTAAAATGAACCTGAATCTCATTTCTTATCTATGAGTTAGAGCTAAATTTTACAATTCACTAGTC CTTGTTGAATCTTACGATTCTAAATTGTGTGCATGTTGCACTTTAGTCGGGTTGTGTGGCCCATATAGGTTTCTGGTGTT TCTTGAGAAGAGTTTTTAAGTTTTTTGCATGGCCCATATAGGTTGCGTGGCCCACACGACTAATATTGCTGTGACCTAGT GTTGACCTTGGGGATGATGAATGATTCAATTAGTTAGCCGACTAACTATAGGAAGTAGGAAAGTAATTTGCATTTTGTCA TCTTATTGATGTTTTTTGGAGGGTTTGAGTACTTAAATTTTGTGCAAGCACCCACAAATTTCCTTCTTATTTTGATTTAT GGCTTGGATCTTGTATTATTTTAAGGTTAATTATATGATATATCAGCTTATGTTTCAATTTATGACTTAATTTTTTTGTA CCATGTATCTTCCGATACATAAAAAGATTGGATTCACGATTGGGAAAATAGGTCTTCCAATTTACGATTCGTATCTCAAC TTAATAACCATTTCTATTTAGTCTAAGACTTACATTTTGTCTACATTAATTGTTTTGTTTTGATGATGAGTTTGCTGAAT TTACTGTCAAATGCATGATTCCAAATTTTATGACTTATATTAGTGATTGATATATGGAAAATTGAATTATGCCTTATGGT TGCTGATTCCATAACTACCTACCTTATAATCACTGTACATGGTGGATAGTATGGGATATGTGATGTGCAAGACTTATAAT ACCTTTCCCATCCTCTCCCGTGTACGATGTAGGTGTATCTGTCAGTGTTTTCAATCTCTTACTATAGCGCTACATTTGTT GTCAATCCCGGCGGGATCCTATCCCATCCCAGCGATAACCTGGGATAACTTTTCCCATTCCAGCCTAGAACGTTGTCGCT GCCAAAATCGTGGCCTATCCCGCACGGTCGTGATTCTCCGTTTTTTTTTTTCTTTCTGAACTCCTGTTTTCCTAAAATAC CTTTAATATCAAAACATTGGGGATTATATTTTAAGGGTATTTCTGGGTTTACCCTACGAGATAAAACCCTAAAATCTTCA CACTCGCCAATTCCTTCTCACACAACTCTTTCAGGCTGCCCTTCCCTCTCTCTCTCTCCCCTTTCCCTCTCTCTCCTTCC CTCTCATCGCCGCTGATCTGTGAAGCACCAGGACCAGCCGGCAACCACCGCGCGACTCTGGCGAGCTTCTTGTAAGGTAG TTTCTCCTTGCTTCTCCTCTCCTCTGTCATGTTTTATTTCCTCTGCTCTGTTTTTCGTAGTTCCTCTCCTCTGTTCTCTT CTCTGTTCTCCTCTCTCTGTTATGACTTTAGTATTTAAGTAGCTCAGTATCGTGTATGATTTTCTTTTTAGTTCTAGCCC TATTAGGACTTTAATTGCTAGTTTGCTACTATGAAAGTATGCATATATTATGAATTTCAAGTAACATTTATCATTGATTT AGTATGTACATATATATGGTATTATACAAAATATAGACAAAAATTCAATACCCCAGCTATTCCGCTTTCCGGGATCCGGC TAACCCAGTTTTGGGGCTGACTGGGACGGGCTGGGAACTGGGATTGATAACATAGGCGCTGCTGCAGTGGCGGAGCAGCT GTCTTCTGCGACAAAAAGGGGGATGGCGGAGCGCATCGCTGTCGCGACCTTGAAGGCGCGATTGCAGTCTGAGTCGCTGT CGTTGCGGCGCTATCAGTGTGCAGTGCTGCTTCTCTTTCAGGAAACCCTGTTTTACCCTTATAATGATACTGTTAGGGGA ACATTTAAGGGTATAATGGGTAATTCATGCTCAGGTTCTTCCCAGTGCGCAGCCCTTGATCTCCTTTCTTCCTTGAATCC AGCAAGCTGCAACTTTGACCTGACTCGAGGACTTCCGGCAAGCCTCCATCTCCCTTCTTCCTCCAGCATCCTTGCTACTC TGTTTTGTCTCTCTCTTATTTTATTTTTTTCCTTTCAGTCTTATTTCTCTGTTTTTTTTTTGGTCGACAGGGTTATTTCT ATAAGTCTATATTGTATATCTTTTATCCCATTAGCGTCTATCTATTTTTAATATATCCCCATAGCCTCCCTGTTCTTTGA CTATTAATTATGAATGTCTCAATTTCATAAAATTTGAGTACCTTTTGTCATTTTTGAGCAATTATGTGTATATTATAGTT TATAGTTTTTATAAAATATATCGGAAAATTCAGCTTAGTGGTCATCCCGCTATGCGCTATACTGCTATAGCGGTTTTGGG TCGGCCGCTACGTGCTGCTATCCGGAATTGAAAACACTGGTATCTATTGTATTTGTATCTTATCTAGTTCTTCTCTTTTT ATCACATTTGACTTTTAAGAGGTAAAAGAAAAATCTTATTAAAGCTTGATTTGATTATACATACTATGCAGACAATGGAA AGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCAGCTGATTTAGTGCAGATATTTAAGGTAAGACATGTTTG AATGGTATTTTGGAATATTGATTCATTTTATTTTACTAGATTGAAGTCTGTTAATTGGAGTAATTTTAAAATTTGAATTC CAATAGTTTCCTGTCTGAAATAACCTGGCAAGGGGTGTTTTTTTAGTCCTTAGTCTTAGTAGCTAAATTATCAGAAATAA TGAAAAGAAACATGATGTATTTTTTTAAATATTTGATTTTGCTAACCTATCTGGTTGAGCGTGCTGTACGTTCAGGCGTT TTTTTCGATTTGTAATTGCTTATGTAAATTCTGGCAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGA AGCCAGTGGAGGAATCAAATCCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCT CAAAAACATGCATATCGTCTTGTGAAGAGGCATAGAGGTGATGTTTGAATTTAAGATTTCATTTTGGTAATTATTATTGT CTTCTGTGTCTATTTCACTTTCTGTTTTACTCATCTATGCTTACTTTTACATTTTATCCACTCTTTTGGCTAGATTAATT CATAACAAAAATTGTAATTTATAACTCATGCAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTA GGTGCCTCTGAAGGAAATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCA AAAGGAGGTAAGTGTCCAAGTGTTGGTGTCGTACGTTATTTTACTGGTTATTCATATATGGGTGCTTGCATGTTGAGAGG GGTGATAAGAACTATCCTAATATGACTCTGTCAAGCAGGCACAACAGCTCTTGATGGATTTTGAAGAACCTTTGAAAGAT TATGTCCGTGCTGTACAATCTATTAAGGTAGGTCTAGTTTTTGTTTTCCTTCATTATTTAGTAAGTAAATTGTATAACCT GATTAAGATATTGTTTGTGAATTTTCCTTTGTTAAACAATTATTCAGATATTTGAATCCTAACATTTTTTCTTTTCCAAC CGCCTTACCCTGAGAGTGAATGGATTGTTACACCTTATTTTTCAACTCAATACTCTTGTTTTACATTCTGAAACAGGCAA CAATCGCAGAGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTGTAT GGTTCTATTACTTGACTAACGTAGTTCGTAAGGCAGAATAATTTCTTTTTTACATAGCATTCCTTTCCCCCTACTAAAAC CCTTGTGTGTATGTAAATGCAGATAAGCCTTGGTTGTGTCTTGTATTGTGGAATATGTAAAAATTCACTTAGTGTTTGGT AAATAGCGGGGTAAAAATCTCTCCACTGCAAGATTTGGGGATTTGAAGGGAATAGAAAATGATTTACAATTTAGGAACTG TATTGACTACAATATCCTTGTATATTTTTTAATTTTCAAAACAGTCCTTATGTATATTAATACCTAGCTATGCCCCCATG CTACTTCATGCTTCTTCACTCTCACATAGGTCAAGCCTTAGTTATATGCTTTTTTTATATCACTTCTTCTATTTTGTTTT ATCACCTTCTAGAAGGATACATTTGTAAAATTACTGTTCTGTTGCCTCCCCTCCCCTTACACCCCAAACAATAGGAGGCT TATTTTCCTTCCCCTCTTCTCCCCTTTTGGCTGATGCCTGATTGTTTACAGAACCTAGAGGACTGACTACTTGGTGTTTT TATTCTGATTTAAATTTTTCGTTGTTGTTTCGAATCCAGTGACAAACTCATGTTGATTCGGTCTGATAGAGTTGCAGAAG CTGAACGTGAATATAACGAGGTAAATTTGCTAACATTTGGCATCCATTGATGAAAACTTATGCATACAGTTTGTTGGCTG GACTGATATGATTTTGTCATACAGTTGAAGGCAGAGAGTGAACAAGCAACAAAGACATTTGAGACAATTGTAAAGTTAAT GAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTTTCCATGAATTTGCTAAAGGCCAGG CACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAAGCATGTTCCTCCTCATAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACCTGAGGGT GTTTTTGCAGGCAGAAGAAGAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCAGCTGATT TAGTGCAGATATTTAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGAATCAAAT CCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCATATCGTCT TGTGAAGAGGCATAGAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCTGAAGGAA ATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGCACAACAG CTCTTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGGCAACAATCGCAGAGAGGGC CAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTTGACAAACTCATGTTGATTC GGTCTGATAGAGTTGCAGAAGCTGAACGTGAATATAACGAGTTGAAGGCAGAGAGTGAACAAGCAACAAAGACATTTGAG ACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTTTCCATGA ATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAAGCATGTT CCTCCTCATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRQALDIFVNRIASHHELQQSEDLRVFLQAEEETMERLRSHETGIFKKKPADLVQIFKDVQSKVSDVVLGKEKPVEESN PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLADFGKAVKLLGASEGNALGKAFSELGIKSEILSAKLQKEAQQ LLMDFEEPLKDYVRAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDRVAEAEREYNELKAESEQATKTFE TIVKLMNEEIGRFQEQKTLDMGIAFHEFAKGQARLANGIAEAWRSLLPKLEACSSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10555:SF170
1 295 295 6.0E-93 –
Gene3D
G3DSA:3.30.1520.10
1 53 53 2.1E-6
IPR036871
PANTHER
PTHR10555
1 295 295 6.0E-93
IPR039358
SUPERFAMILY
SSF64268
2 33 32 5.23E-5
IPR036871
Pfam
PF09325
64 288 225 2.5E-25
IPR015404
Gene3D
G3DSA:1.20.1270.60
75 293 219 1.7E-42
IPR027267
CDD
cd07596
78 288 211 1.90345E-49 –
SUPERFAMILY
SSF103657
80 294 215 1.07E-11
IPR027267
Coils
Coil
211 238 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0035091
Molecular function Phosphatidylinositol binding Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0099300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…