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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0107000 |
| Transcript ID | LotjaGi5g1v0107000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; TAIR: AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; Swiss-Prot: sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179; TrEMBL-Plants: tr|I3T0S6|I3T0S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0107000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20262269..20267087) extracted from Lotus japonicus Gifu genome v1.2.
ACATGATGTTTGGGAGCATTTCAACAATCGTAATTTTGAAGTAATTATGGTCGCAGTTGTGCGAGCGTGGTAACCAACCA ACCTTCTTCTATTGCATCATCTGTAGTTCACAACTTTGAGCTCCTTTCGTAAAATAACTCGTATGAACTCGTTCACGGTT AGATCAAACTTAAATTTTGATATGTAGTTCAAAACACATAAATCTTAAATTTGACCGGACAGATTGTTACGAAAATGTAT GTGGAAGGAGAATGAGCTTGCACAAGAAGTAGTCTCCTCACTTTAGTGAAACTTGCAATCCACAAACCACTAAACACACA TAAAAATTACAAATGAAAGCTAGAGAATCCTAAGATACACTAGAAAATACAAAAATGCATGATCTAAGACTAAAGTGCCC TAAAATGACCAAAATATCCTATTTACCTAATACAATAATTCCCCCTTCTTCTTCCTCCTCCCACCACTATTCGTCCTTTC CATTATTGTTTCCGACCAACCAACTTCACCATTTTTTCCAGCCAACCACCACCATCCCCCTTATGTTGTGAGGACGTGAA ACATATTTAATATTTTATGTTATTAAGTCTTTTAGATTGTTTACTACTTATTACTTATATTTTATCTCCCTTTTATCATT GTCAAATAAAATTAAGGATTAGAGAAACTTAATAAACAAACAAACATAAGAGCCAACTCTTTATATTAAATTAGTGGAAT TACCCGTGCGAGGCACGAGTTATTTTTGTTATATGCAATTTTATTTTTGTACGGTTGTAGCCAATGTATTTGTTTAAAAT ATACATCCAAAATTGATATTTTTGTTTGGATTTGTAAAGATTATGTCATATTTTCACGTTTGTATTTAACCACCATAATT TTGTACTTACTTAAATATATTTATCAAAGTAGAGGCCTCGGGGAATCGGGTGCCACGTGACAAAACATTGTAGAAAAAAC CTTCATTTAATATATTATATATATAATTGGTTTGAAACATAAAAAGTGCATAGTACAAAACTAGGGAGGTGGAGGAGCAA AATGTTGTGAGAGCATGTCAATTGTTAAGCATCTCCATGGAGGAGAAGGAGGAGGAAAATGTTAGTTAATTTCTAAATAT ATCCTTTGTTTCGTAATCAATTATGTCCTTATTATTTTTTACTAATTAATTGAGATAGAAGAAATTCATAATTAAGATAT AACTAACTTATCTTAAACTCTTAAATGACATCTAAACATGAAAAAAAGAAACAAAAAAAAGAAACAAATTTTAGCTATGT ATGTTAATCTATAAATGCTAAAGAGATATGAGATGAGGAAGTTAACTTGAGCAAGCAAAGCTGGCCATTATCATCAACAA CTAGGTTTGTTCATCTTGTGCTGTCACTCCTTCGAAATCAAAGCAACGATGGAGATCAAAAAGTTCAATCTCTTGTTCTT TTCAACGCTGTGTCTTCTTCACGCCTTCGCCACCGCCACCGACGTTCACTATTGCGGTTACTTGCTTCTCCTTCATCCTC TTTTCCTTTACTTTCCCCCAATGTCTGCTCTTATTCAACTATTTTTTTCGTTATTTTCTTTGATTGAGGATCACAGGGGG TGTTTCAAGTTTTAATCTTTTCGTACCAATAATTGTTCGTTAAATAATTGTGTTTATTTGTTCTGATAATTGTTTTTGTT TTTGTTTTTGCATCAATTTTATATGTTTATTTGTTGTGTGCCATCAATTTGATTTAATTAGGAGTTGATGAATTTTATAT TTGTATAAATTATCAGAGTTGAACTGATGACTGATGAGTTGAGTTTAATTGAATAATCAGTTTTCCTATTGCTAATTGGA AGCAACTTGTTAAATAATTATTTGAAGTGCAGATTCTATACAATTAGGGTTTTAATTTTTGTGTTTTTGTTTTTATAGTT GTGACTTGTGAAGAAGGGTTCTTCTCTTTGATTAGTTTTAGAATTTATGAAGTTAGAATGTTTTGTTGTATATTCTTGTT GTATTATTACTATTCTTCATGATTGATTAAACAATAACATGAATGTTTATGTATGCCAGATAAGAAAGCTGACTATGATG TTGAGGTCAAAGGAGTTGAAATATCTCCTGATCCCGTCGCAAGAGGCCAGCCTGCTACATTCAGCATTGCTGCAGCTACA AGTACTCCTAAACTTCACATGCTTTTCTTATGTCAACATGTTTACTTTCTTTTGTTTTTTAAATTTCTATGAATTGTTAT ATCCAATTTCATAAATTCGGTGTTTCTTTATGCCCATGTGTGTTGAAACTTTGCTATTTTACTATTTTCATGTTTTTATG AGCATGGAAAAGTATGGAAGTGATGTTTGGGTGTGTTTCGGGAGCTGAGATGGATTTGTGAGTTTTCAGGAGTTAAATAG CTGCAAATGCAGTCTAGTTCAAGGGAGGAGTCAAAAGTGTTATGGTTTTTAGGATTATTTGATATTTGATTTAGTTTAGT TTTGTAGTCTAGTTTCCTTAATTCTAGTTAGAACGTGTGCTGTAGTTTGTTACAGCACGTTTGTTTTCTTTCTCTATTTA TTAGCCGCACTCCCACAAGGAATAACAGTTCTGGAATGACTTGTTTATTCCTTGTGAAAGTACAACTGATAAATAGAGAA AGAAAACACTGTAACAAACTACAGCCCACGTTCTAACTAGAATTAAGAAACTAACTTGACTACAAAACTAAATTAAATCA AATGACAAATAGTGCGAAAAACCAGAACACTTTTGACTAAGTCTTATTATTTCCTCCCTTGAACTAGACTCCATTTGCAG CTAGTTAACTCCTGAAAAATCACAAACTCCAAGCTTCCATCTCAGCTCCCGAATGACTCCAATTTCAACGGTTTGGTGAG GATGTCCGCTAATTGGACAACTTATGAAAGTAAGCTCAAAACAGCTTGTAGGTAGGTCATAAGAAAGTTTTAGATAAGCT CTCCAAAACACTTGCATAAGTGCATATGCTATAAGATAGTTTCAAATAAGCTATTCTAAACGGGAACTTAGTTAGATATC TTAATGAGATTATATCATAGTGGTGCATTGCTGATGGAAAGTGAGGTTTTGATGGATAGAGTATTGGTCCAATCGTTTCG CAGGTCAAGCATTATCTGGAGGGAAACTGGTGATTGATGTGTCGTATTTTGGTTGGCACGTATATAGTGAGACCCATGAC CTTTGTGGAGAAACACCTTGTCCTGTTTCTGCTGGCAACTTTGTGATTGCACATTCACAAGTTTTGCCTGGATTCACTCC ACCTGTAAGTATATGTTTTGTTCATTCCTTGAATAGATTGTGCGTGTGTGTATGTATTTTGGATGAAGAGGAAATATATC TACCTATGCAAGTGCAGATTTGCAGCTGATTCAAAATCTGTCTTGCTAAATTATTGACTTCTTTATTAAGTGCATGTTTG GATGCACAGTGGAAAACCACAGTGAAGCCATAATCACGGTGGACAGAAAAAACATCCCTTATCTTTTACATCTATCCACC ACCATGATTTGGTCTCACCGTGATTTTTCACTGTGTATTCGGACATGCACAAATTCGAACTCCTGGGAAGAAATTCTTGG ACTCGTTTTATGGCATGTAGACATCTTAAGATAGGGATTGACATTTGTTGGAACACAGCTAGAATCTGATGTGTCTTAGC ATGTTATCTGTTTGATACTTGGATGGTACCAGCACACTACTACTTTTATCGTCTGCTCTGTTTTTCTATTTATATAAGGG GATTTGGAGGGTGAAATCAACATGTTTATTGCCATTTAGAAAACCATGCTATACCTATTTTTTGATACTGTGACTTCTTT AGTCAAACACGGCAGCAACCTTCATATTCATCAAGAAAATTTTCCATTTTTTGTGAATGTTGTATTGACAAATTCCAAGT TCATTATCCTGTGATTTAACCCCTGCCGCCTAACACACATAGGTCTTTCTATTTTTGTGCTAATGCCATGAGCATGTTAG CTTGCATGAGCATCTCACCTTTCCTTTGGAGAGGTTTTATGTAGCACTCAATTTGTTGTTTCCTTCATTTATCAGTTTCC AAATTACGACTGTATTTATTAATGGCACTTCATTTCAATTGTCTAATTTCTGAAGGGCATCCTTGCAGACATTTAAGTTT CAAGTGAAGCACTGGATTATGTTGTTAAGATTGTTTGATCATACAATGTTGTCTCCTTTCTTGTTTAATGCTAGTCTCTA AGTTTCATCTTACCATGTATTTCATTTGCAGGGTTCGTATGCTCTGACCATGAAGATGTATGATGGAAACAAGCATGAGC TGACTTGCGTTAAATTTGGTTTTGATATTGGGTTTGGCTCATCTGTGGCTGACATTTAATTGACATTAGTCCTGGAAATC TATGGTAGATCCGTATATATTATTTGTATAATATGCGAAGTACCCTTATAACATTGACCTAGTTGTAACTATAATGCAGC ATTACCAATATGTGGATTAAGAATCATAAAATGTGTTGTACTAGCTGTGTTCATAAAACTCAAGTTGTGTTCTTTATATA ATTTTCCTTTTTGATTACGCGTAGAAGTTGTCCATGCTGAGTGAGGTAATATCTTTCTTTGTTATGAGGGATTAAAAACT TCTCATGTTATATGACAATGTATTTTTGTTCGCTAGAGAGGCATAACATGTACACAGAGTCACAGATGGTGATTGATCAT GACTCTGGACACACTTTGTCTCCTTCACACAAGGTATCATTGGTTGTCGAAGGACCAAGAGGTGCACCCTATGTCATAGT AGTACCAAACCTGTCAAAC
CDS sequence (LotjaGi5g1v0107000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATCAAAAAGTTCAATCTCTTGTTCTTTTCAACGCTGTGTCTTCTTCACGCCTTCGCCACCGCCACCGACGTTCA CTATTGCGATAAGAAAGCTGACTATGATGTTGAGGTCAAAGGAGTTGAAATATCTCCTGATCCCGTCGCAAGAGGCCAGC CTGCTACATTCAGCATTGCTGCAGCTACAAGTCAAGCATTATCTGGAGGGAAACTGGTGATTGATGTGTCGTATTTTGGT TGGCACGTATATAGTGAGACCCATGACCTTTGTGGAGAAACACCTTGTCCTGTTTCTGCTGGCAACTTTGTGATTGCACA TTCACAAGTTTTGCCTGGATTCACTCCACCTGGTTCGTATGCTCTGACCATGAAGATGTATGATGGAAACAAGCATGAGC TGACTTGCGTTAAATTTGGTTTTGATATTGGGTTTGGCTCATCTGTGGCTGACATTTAA
Protein sequence (LotjaGi5g1v0107000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIKKFNLLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALSGGKLVIDVSYFG WHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTPPGSYALTMKMYDGNKHELTCVKFGFDIGFGSSVADI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 5 | 151 | 147 | 1.2E-62 | ||
| PANTHER | 5 | 151 | 147 | 1.2E-62 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Gene3D | 23 | 143 | 121 | 4.3E-6 | – | |
| SUPERFAMILY | 23 | 143 | 121 | 6.06E-26 | ||
| Pfam | 24 | 141 | 118 | 1.8E-21 | ||
| Phobius | 24 | 152 | 129 | - | – | |
| SMART | 26 | 141 | 116 | 5.3E-34 | ||
| CDD | 26 | 141 | 116 | 7.17649E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular sterol transport | The directed movement of sterols within cells. |
Expression pattern of LotjaGi5g1v0107000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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