Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228400 |
| Transcript ID | LotjaGi5g1v0228400.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|G7I9F7|G7I9F7_MEDTR Importin subunit alpha; Found in the gene: LotjaGi5g1v0228400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53554108..53559221) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCACTTCACCTTTTCCAAACTTGGAAACAAAGAAAACCCCAAAACTCTCCAATATTCCCCTTCTCACCCCCTTTTTA TTCCACCATCATCTCCTTCTTCTCCCAAACCCTACGCTCCTCTCCGTCGTTACCTTCCCCCAATCGACACCGCACTGCTT CCTCTCTTCCGCCGCCACCATGTCGTACCGCCCTACCGGCAACTCCAGGACCGAGGTCCGTCGCAGTCGGTACAAGGTTG CGGTGGACGCTGAAGAAGGTCGCAGACGCCGTGAGGACACCATGGTCGAGATCCGCAAGAATCGCAGGGAGGAGAGCTTG TTGAAGAAGAGACGCGAGGGTCTCCAGCCTCAGCAGCAAGTTCCTTCCGCCGCTCACTCCACTGTCGTCGAGAAGAAGGT CGGTTTTTTCATCATTCAATTGTTTTTGATTTGATTTGATTTGATTACTTCTTCACAAACACGAATTAAGCTTGAGATTT CGTCATTTCTGATTGTTGAATTGATGATGATGATGATGATTGATGATAATGATGTGAAGTTGGGTTTCTGTGTTGTTGTT GTTGCAGTTGGAACACCTCCCAGCCATGGTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGC AGTTTCGCAAGCTGCTTTCGATTGGTTCGTGATTGATCTCTGTACCTAATTTATTATGTAGTGAATTTTAATTGACCTTT GGTTAACTTGTTTTTGTTTGTGTGTGTGTGACAGAACGTACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTC CCGCTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGCAATTGCAGGTACGTCGTGAATAATGCATTGTTTTGTTGATGG TTGAGTAATTACTATGTTACTTATGCTGATTTGTTGACTTGGCATGTCTGTTGTCGTTTTGCAGTTTGAGGCAGCTTGGG CTTTGACAAATATAGCTTCGGGAACATCGGAAAACACCAAGGTGGTGATTGATCATGGGGCTGTCCCGATTTTTGTGCAG CTTCTCGCTTCTCCTAGTGATGACGTCCGTGAACAGGTATATTTTATATATCTTAACATATCATCACTTACCTATAAAAT GCAGACACGTTAGGAAACTGAGATTCCTTTTTTAATATCGAGGATTTGGGGTACAACCTTTTCTTTCTGGCGTTAATGAA ATTAAAACGATAACTCTTGGGCTATGAAACTTGTTTGTTCATGTTGATTTTTACATTTGGGTATACTTCTGTAGTTGCAG TGTAGTTATGAGCATGCAAAAGAAGAGGGGTCGGTGGGTGATCTATTTGCTTGTGCTGAGTGGTTTTATTTAAAATATGT AGCTGCCATCAAAAGAAAGATAACAATACGTCAATGCCTTTGTCGCATTGTACCAGGGTATCTTTTATCAACAGCCTAAC ATTTCTCACTGTGTTTTGGATACTAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGAT CTTGTTCTTGGTAATGGGGCTTTGATTCCTCTGTTGGCACAATTGAATGAACACGCCAAACTTTCTATGCTAAGAAATGC TACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGATCAGGTATGAAAATGTGCATTGCTCAATC TCTCTGAATAACTAAATCATGGCGTTATTTTTTTAAGCCCTTGTTTTTCTTTATCATGATGCACTTCTGTCAAAGTTGAA ATGGTACTTTCATGTTGTCAGATCCATATGAAATAGAAAGGGAGATTACATTACTTGGTTCTATTCTTTTGAATTATTTG TTGAATCAAGAGTACGTGTGTTTACCCTGTAGTTTAGAATGTCATGTTCTTGCTATCTTGCATGATATGGAATATCTAAG TACAGTTGACCTTGTGATCTGATGAACAACATTATTCATCATCTTCTTCTTTTGATGCATTTTTATTATGAATATGCGAA GTTTGTAGCCTTTTCAATCTAATTGTTCATGGTTATTCTTCTATGTGAAGTATTGAGCAAGTAACAGCCACCCTTGTAAC TTGTAACATGAAAAAGGAACCTGGAGGGTTGTCCATTGGCTAATTCGTTGGTTTTTCCTGTATCTATTTTCCTGATTGTG TCATGCTAGCTGCTATTATGCTCTACTTTACACATCATACATTTTTCTTTTTTTAATAGGTTAAACCTGCACTTCCTGCT CTCACTAGTCTAATCCATTCAAACGATGAAGAGGTATTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTAC AAATGATAAAATTCAAGCTGTCATTGAAGCTGGTGTGTGCCCCCGGCTTGTTGAGCTGCTACTGTGAGTACTTGACATCT CATATATGATATATGGCTGTGCAATAATGAATGGGCCCCAGTGGCATTTTTCTGTCAAACTAAGTGTTCTTCTCTTGTTC AGGCACCCATCTCCTTCAGTGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCA GGTATTAAGTTGTGGAATGTGTCATGGTTGCTTTGTTATATACAGCACTTTTCTTTTCAGTTGTGGAGTCATATGCTCAT TGAATGCCCTTATTTGTAACCTTTTTTATGTTTATTATCTTTTATTTTGCCATTTGGTGTGTGTTGTAGCTGTTGGGTAA AGTTACGTGAATTGTGAGTTGTTTTATATTGTACTGCTAACATGCCCCCTCACACGAGAGCCCATTGGGTTTGAAGTGTG ACAATGTATAGGCTCACCCACCTTGTGCTTCTTCAATTCAACTTTGTGTTAAAACAAATTGAGGGCAATATCGATCGAAC TCTATAGTCTAGAAGCTCTGACACACGAATAGTTTTATGTTAATACTTCTAATTATATGTCAATAGTTTTTTTTATATTA CAAGTGTTTTGCTGGTTTATAATTCACTGGCCCCCCTCTGATTCATATCATAGAAATATTCTTGCCTAAGTCATGCCAAA TCTTTCTACGGACTGGATTGGAGCTGTATGGATAAAGGATTTTCTCTGGAATGTGATTTAATCAGCTTTGTAATTTTTTA TTCTTATATTTAGTACCCTTTTTCAAGTGCTAACTGCTACAGTCAGTAAGTTCCTTCTGAGACTACCTAATCATGTCTAT ATTTTGGAAATGATATTTGTCAGCGTTGAAACTTGCTTTGCATAATTTATGTTTTTGGTTTGTTTGTTTAACCTAGTGCA TTCCCTTGTAGGTTATAATTAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATT AAAAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGGTATAGTTGTTCACTTTATG ATAGTTAGACTTAGAATGATGTTTCTCTCTTTAAGTTATGATTGCACTATTGTTTTCTTATTTTCTTAAATTCCTGTTAA TCAACAGTCTGTGGTTGAGGCCAATATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAG AGGCTGCGTGGGCTATCTCAAATGCTACATCTGGTGGCGCTCATGAACAAATCAAGTATGGGGAGACACGTTTTCAATAT TCATGAGGAGGTTATTATGGTGTTATAATGTACTTTTTCTTGCGAGTTATGGACTGTTTTCCCTTGTTGACAGGTACCTA GTGAGTCAAGGGTGTATCAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTCACAGTTTGTCTGGAAGG CCTTGAAAACATCCTGAAGGTAGGAGAAGCTGATAAAAATACAGGCAATTCTGGGGACGTGAATCTATATGCCCAAATGA TTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTTCAGAGTCATGACAACACAGAGATTTATGAAAAGGCAGTGAAG ATTCTTGAAACGTACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTGCTGCTCAATCAGGGTTCAACTT TGGGGGCACTGAGGTTCCTTCTGTGCCTTCCGGTGGATTCAACTTCAATTAGAAGATATTTATTCTTATACAGGGGCAAC ATCTCATATTTGGCCTTTTCTGGATTGTCTGCGAATTTCCGAACGAAATTAGTCAATTACGTTTTGACAATTGCCATGTT TATGTTTTCTTCAATTGTTCAAACACTATTGGGAACTTTGTCAACTGCAGGAGTTTTGGCTGGTCTACCAGTAAAGTCCT CCAGTTTTATGGGACTACAGTTGAGGGGTTAGGTCAATGTCTTGTCGCTGTCCTTGAGTCCAACAAGGTTCAGCATTGGT AAATACTAAATAGAGTGTTGCTGGACTGGCTTGGGATTTTGCAATGCCTGGTTTTTCCTATCTTATGTTGTGACAGATGC GTGGTAGCTTGATTTTTTCGCCACCTTAGAGAATACTAGACTTCTCTGTCTGCCTAGTGATCATTCAATATAAAATTGTT TATTCTGGAGAATTTCATTTGTTAAATGTAATAGATTGGAGTCAGTAAGTTTCAGTTATGATTGTGGGTTTTTTTTTTAC TCTCTGGCTTAAGTATTGTTACAAGGAGGGTTAGATCTTTCTTTTCCCTCGACCCTGGTTAGTTTTTATTTTTTGCCTGC GATCTTTAGCCTAGAGTTCAATTATTCTATAAACTGATTGAAATCTCCCGTGGTCCTGGTTTGGCGTTCCTTTCCTTTCT CACTAATAAAATTGTATCAGTTATTTTTAAAACACATGTAAGGTTGTACCAATGTTATTTTTTAATTGATGTCATAATTT TTTAGTACACCAAATGAAGATAGAGAAGATTTTACCAAGTGAGTGGCGTAGTGATTTATCATTTCTTTTCTTAGCAAATG GTTGGGTTGGGTTTGATTCTTTACTCTTGTGAATGAAAAAATAAAAGGTTAAGGGTCATATTAGTCCTTGTATTTGTAAA AACGTTTGATTTTGGTCCTTCAGTCGAAAAATTGCCAGTAATTGTATTATAAACCGCCAGTAACTGTAAAAAAC
CDS sequence (LotjaGi5g1v0228400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTACCGCCCTACCGGCAACTCCAGGACCGAGGTCCGTCGCAGTCGGTACAAGGTTGCGGTGGACGCTGAAGAAGG TCGCAGACGCCGTGAGGACACCATGGTCGAGATCCGCAAGAATCGCAGGGAGGAGAGCTTGTTGAAGAAGAGACGCGAGG GTCTCCAGCCTCAGCAGCAAGTTCCTTCCGCCGCTCACTCCACTGTCGTCGAGAAGAAGTTGGAACACCTCCCAGCCATG GTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTCGATTGAACG TACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGC AATTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCGGGAACATCGGAAAACACCAAGGTGGTGATTGATCAT GGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTGATGACGTCCGTGAACAGGCAGTGTGGGCATTAGGAAA TGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGGCTTTGATTCCTCTGTTGGCACAATTGAATG AACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTT GATCAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATTCAAACGATGAAGAGGTATTGACTGATGCCTGTTG GGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTCATTGAAGCTGGTGTGTGCCCCCGGCTTGTTG AGCTGCTACTGCACCCATCTCCTTCAGTGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATG CAAACTCAGGTTATAATTAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATTAA AAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGTCTGTGGTTGAGGCCAATATAA TTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAGAGGCTGCGTGGGCTATCTCAAATGCTACA TCTGGTGGCGCTCATGAACAAATCAAGTACCTAGTGAGTCAAGGGTGTATCAAGCCCTTGTGTGATCTTCTTATCTGTCC TGATCCTAGGATCGTCACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAGGTAGGAGAAGCTGATAAAAATACAGGCA ATTCTGGGGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTTCAGAGTCAT GACAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACGTACTGGTTGGAGGAAGAAGATGAGACTATGCCTCC AGGGGATGCTGCTGCTCAATCAGGGTTCAACTTTGGGGGCACTGAGGTTCCTTCTGTGCCTTCCGGTGGATTCAACTTCA ATTAG
Protein sequence (LotjaGi5g1v0228400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYRPTGNSRTEVRRSRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQQVPSAAHSTVVEKKLEHLPAM VAGVWSDDNSMQLESTTQFRKLLSIERTPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDH GAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF DQVKPALPALTSLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDM QTQVIINHQALPCLLNLLASNYKKSIKKEACWTISNITAGNKQQIQSVVEANIIGPLVNLLQNAEFDIKKEAAWAISNAT SGGAHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNTGNSGDVNLYAQMIDDAEGLEKIENLQSH DNTEIYEKAVKILETYWLEEEDETMPPGDAAAQSGFNFGGTEVPSVPSGGFNFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 60 | 60 | 15.192 | ||
| PIRSF | 6 | 533 | 528 | 2.2E-221 | ||
| PANTHER | 8 | 533 | 526 | 3.5E-303 | – | |
| PANTHER | 8 | 533 | 526 | 3.5E-303 | – | |
| Gene3D | 12 | 52 | 41 | 1.4E-5 | ||
| Pfam | 14 | 97 | 84 | 6.1E-23 | ||
| SUPERFAMILY | 15 | 502 | 488 | 2.0E-132 | ||
| Gene3D | 75 | 498 | 424 | 2.1E-217 | ||
| SMART | 107 | 148 | 42 | 1.1E-7 | ||
| Pfam | 109 | 148 | 40 | 2.4E-9 | ||
| ProSiteProfiles | 118 | 161 | 44 | 10.132 | ||
| SMART | 150 | 190 | 41 | 2.1E-11 | ||
| Pfam | 150 | 189 | 40 | 2.8E-13 | ||
| ProSiteProfiles | 161 | 203 | 43 | 11.427 | ||
| SMART | 191 | 233 | 43 | 0.31 | ||
| Pfam | 192 | 233 | 42 | 4.4E-8 | ||
| SMART | 235 | 274 | 40 | 0.0093 | ||
| ProSiteProfiles | 245 | 287 | 43 | 10.027 | ||
| Pfam | 246 | 274 | 29 | 2.7E-7 | ||
| SMART | 276 | 316 | 41 | 8.0E-7 | ||
| Pfam | 277 | 315 | 39 | 2.4E-9 | ||
| SMART | 318 | 359 | 42 | 2.0E-8 | ||
| Pfam | 319 | 359 | 41 | 2.6E-9 | ||
| SMART | 361 | 401 | 41 | 1.3E-7 | ||
| Pfam | 361 | 400 | 40 | 7.2E-11 | ||
| SMART | 404 | 444 | 41 | 6.7E-6 | ||
| Pfam | 406 | 442 | 37 | 5.7E-7 | ||
| Pfam | 459 | 503 | 45 | 1.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi5g1v0228400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…