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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0309900 |
| Transcript ID | LotjaGi5g1v0309900.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|I3S9R4|I3S9R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62814539..62816767) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGAGGGAAAGAGAATTGCGAACAAGATGTGGATGGTTTTGATGTGTTTGATGCTGAGCTTCGTTGCTCGCATTGA ATCGCTCTCTGTCACTGTGCACGAGGTTGAGTGCATCTACGAGTATGTGCTCTATGAGGGTGACACCGTTTCCGGGAACT TCGTTGTTGTTGACCATGACATTTTCTGGGGCTCCGATCACCCCGGCATTGATCTCACGGTGAGTGCAACGCAAACCCAA TTCCCTGTCATTCAATTTGAATTTTGTTTTATTTTGCTTTGTTTGGTGTTTGGCAAGTTTTGGATTTTTGTGTATGGTGT TGAATTTAGGGTTTTTAGTTGGGATGGGTTAAATTAGGGTTTTTGAGGAGGATTGGTGTTATTTTTATAACTAGGGTTGA ATATGATCTATGTGTAGCTATAATCAAACATGAAAATTGTTCATTTAACAAAAGGGGATGGACTTGGTTAAGCTGTAGGA AGCTATTGATGTGTCTCTTACATGACTTGGTTGCATCTTCCTTAAGCTGAATTATGGATGGGGATTACCAAAATGTGTTG GATGCCTCAAATTCTGCATATATTGTGTTTAAATGTTTTAGTGATCAGTATCATTTGTGTGATGAATGATCATTGGTGAG TCCTTGGTTGTTGGTTCTTTCTTGTTTTGCATGGATATTAGCTGATGCTTGGTGATGTATTTTATTTTGGGGACTTAGGG TTGTGTAAAAAATTATATTGTGCTAACTAGTAATATCATAGGAAGTACATTGGGAGCCATCTTTGGTTACTGTTTGTATG AATCCATAGTGGTTTTGTGTAAAGAAATTTATGTGTGCTAACTAGTATAATAGGAAGTGCATTAGGAGCCATCTTTGGTT ACTGTTTGTATGAATTCTTTGTCTGATTGAGCAGCCCAAATTTGCATATTGTTTTCTATCTTTAGCTTTTCAGATATCCT AATTTTTGGGTTATATGCAGGTGACATCTCCTGCAGGTAATACTGTCCACGACATCAAGGGAACCTCTGGCGACAAGTTT CAATTTAAAGCCCCAGCTTCTGGGATGTACAAATTTTGTTTTCATAACCCATACTCGACACCTGAGACTGTTTCCTTCTA CATCCATGTTGGTCATATTCCCAATGAGCATAACCTTGCCAAAGATGGTATGTTCTCTGGGAAAGCATCCTTAGTAGATT CTACAATTAACATATTTATAGTATTAAATAGTATAGTCGTTTACCATTTACCTGAGGTATTCTTGACATTTGTGAAGAGC AATCTAAGTGTTTTTGTTCCTTCTATTGTTTGGTTTTTGGGAGTTTCCCTAATTTTGATGGTTTGCACTTGCAGAGCATC TGGACCCAATTAATGTTAAAATTGCTGAGCTCAGGGAGGCACTAGAGTCTGTTACAGCTGAACAAAAGTACTTGAAAGCT CGTGATACTAGGCATCGCCATAGTAAGTAGTCTCCTTTTCCATGAACTGCCACTGTTCTACCTTGGGAAATTTGATTGTG GTAGTCATGATATTTTTCTTTGAATCATATATGCATTTATATAAAATGCAATTTATTGTCACAAACTTTTTAAGAACCGG GAGGCTAAAATTAACCTCTTCTGAGCATCTAAACGCAATGCCGGACAGAGTCATGGATATCAGGTGGGGAGTGGGAATTT TGATAACAGAATTACTCATGCTCAGCACCAATTCTTTTAAGAACTTGGATTTCGAGAGAAAGTAGTGAAAAGAAAGGGAC AGTTTCTCACGTGATCGTGATCTCACCCAAAGCTTTTCCACTCCCAGGCCTAGTGTAGCAGAGATCCATCATCCATCCAT TAACTTTTTAGACATATAAGAACTAGTTTGTTTGTACCGCTTGTTGTTGGCTAAGAATGTTCCTAGTTTCTGCATCTAGG AACTGTCAGTCTCATGATATCTGGTCATTATGTACAGCATTTTAGATCTGTTTCTTAATATCCTCATGATAGTATTTTCC TGAATCAAGAATGAAAGATATATTATCCTCGTCTGCATTCCTTCTTCTTTCATTATCCACCTTGTACTGACTCAAACTCC CTTTTTTGTTTGTAGCAAATGAGAGCACACGCTCGCGAGTCATATTCTACACTGTCGGAGAGTACCTTTTGTTGGCTGCT GTTAGCACACTGCAAGTCATATACATTAGGCGCCTTTTCAGCAAGTCAGTGGCCTACAACCGTGTTTGA
CDS sequence (LotjaGi5g1v0309900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGGAAAGAGAATTGCGAACAAGATGTGGATGGTTTTGATGTGTTTGATGCTGAGCTTCGTTGCTCGCATTGA ATCGCTCTCTGTCACTGTGCACGAGGTTGAGTGCATCTACGAGTATGTGCTCTATGAGGGTGACACCGTTTCCGGGAACT TCGTTGTTGTTGACCATGACATTTTCTGGGGCTCCGATCACCCCGGCATTGATCTCACGGTGACATCTCCTGCAGGTAAT ACTGTCCACGACATCAAGGGAACCTCTGGCGACAAGTTTCAATTTAAAGCCCCAGCTTCTGGGATGTACAAATTTTGTTT TCATAACCCATACTCGACACCTGAGACTGTTTCCTTCTACATCCATGTTGGTCATATTCCCAATGAGCATAACCTTGCCA AAGATGAGCATCTGGACCCAATTAATGTTAAAATTGCTGAGCTCAGGGAGGCACTAGAGTCTGTTACAGCTGAACAAAAG TACTTGAAAGCTCGTGATACTAGGCATCGCCATACAAATGAGAGCACACGCTCGCGAGTCATATTCTACACTGTCGGAGA GTACCTTTTGTTGGCTGCTGTTAGCACACTGCAAGTCATATACATTAGGCGCCTTTTCAGCAAGTCAGTGGCCTACAACC GTGTTTGA
Protein sequence (LotjaGi5g1v0309900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEGKRIANKMWMVLMCLMLSFVARIESLSVTVHEVECIYEYVLYEGDTVSGNFVVVDHDIFWGSDHPGIDLTVTSPAGN TVHDIKGTSGDKFQFKAPASGMYKFCFHNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVTAEQK YLKARDTRHRHTNESTRSRVIFYTVGEYLLLAAVSTLQVIYIRRLFSKSVAYNRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| PANTHER | 8 | 213 | 206 | 7.5E-120 | – | |
| PANTHER | 8 | 213 | 206 | 7.5E-120 | ||
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| SMART | 28 | 207 | 180 | 6.3E-55 | ||
| Phobius | 29 | 179 | 151 | - | – | |
| Pfam | 33 | 206 | 174 | 3.2E-43 | ||
| ProSiteProfiles | 36 | 123 | 88 | 16.313 | ||
| SUPERFAMILY | 43 | 132 | 90 | 5.49E-7 | ||
| Coils | 145 | 165 | 21 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 180 | 202 | 23 | - | – | |
| Phobius | 203 | 215 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0309900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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