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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036598
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.131s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0328300.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9M0R2|PATL5_ARATH Patellin-5; TrEMBL-Plants: tr|A0A072V1D5|A0A072V1D5_MEDTR Patellin-3 protein; Found in the gene: LotjaGi1g1v0328300 LjG1.1_chr1 78321174 78325356 +
2 domain predictions
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LotjaGi1g1v0447900.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi1g1v0447900 LjG1.1_chr1 94706658 94709499 +
2 domain predictions
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LotjaGi1g1v0715500.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|A0A072U3W0|A0A072U3W0_MEDTR Emp24/gp25L/p24 family/GOLD protein; Found in the gene: LotjaGi1g1v0715500 LjG1.1_chr1 128378073 128380194 -
2 domain predictions
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LotjaGi3g1v0053600.1
n.a. Retinal-binding; TAIR: AT5G01010.1 retinal-binding protein; Swiss-Prot: sp|P49193|RALB_TODPA Retinal-binding protein; TrEMBL-Plants: tr|I1MQR1|I1MQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0053600 LjG1.1_chr3 5584295 5593301 +
2 domain predictions
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LotjaGi3g1v0201200.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 LjG1.1_chr3 29337776 29341155 +
2 domain predictions
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LotjaGi3g1v0201200.2
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 LjG1.1_chr3 29338252 29340359 +
2 domain predictions
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LotjaGi3g1v0556200.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9M0R2|PATL5_ARATH Patellin-5; TrEMBL-Plants: tr|I1KWA0|I1KWA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556200 LjG1.1_chr3 97407047 97412321 -
2 domain predictions
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LotjaGi4g1v0416000.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT1G72160.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q56Z59|PATL3_ARATH Patellin-3; TrEMBL-Plants: tr|A0A1J7HZ98|A0A1J7HZ98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0416000 LjG1.1_chr4 79150331 79154574 +
2 domain predictions
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LotjaGi5g1v0091300.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT1G72160.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q56Z59|PATL3_ARATH Patellin-3; TrEMBL-Plants: tr|A0A151S2I8|A0A151S2I8_CAJCA Patellin-3; Found in the gene: LotjaGi5g1v0091300 LjG1.1_chr5 15962658 15967004 -
2 domain predictions
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LotjaGi5g1v0309900.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|I3S9R4|I3S9R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309900 LjG1.1_chr5 62804342 62819784 -
2 domain predictions
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LotjaGi5g1v0309900.6
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|I3S9R4|I3S9R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309900 LjG1.1_chr5 62814539 62816767 -
2 domain predictions
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