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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358900 |
| Transcript ID | LotjaGi5g1v0358900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin-repeat protein; TAIR: AT3G12360.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A3KBV8|A3KBV8_LOTJA IGN1; Found in the gene: LotjaGi5g1v0358900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67337880..67341160) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCAACTTCAACCAACCAGGTTTTTTTTTTTCTCTATTCATCCATCCAAATTTTCAATAAAGTTTTACTTTTTT GATGACCCTTTAATCTGATTGTTGTGTAGGAGGAGCTCTAGGTCAAAGGGACATAGAAAAGGAAAAGGCTGCTATGACTC CACCACAGACTCCACTTTCTGAGATTTCGCCGTCGCCGTCTCCGTCGTCATCCACGGCGCCGGCGCTGGTGCTGTCGAAC TCCGGGAAGCGGATCGACCAGGCCGGGAAGAAGAAGTACGTGAAGCAGGTGACAGGGCGCCACAACGACACGGAGCTGCA CCTGGCGGCGCAGAGGGGCGATGTTGGTGCGGTCAGGCAGATCCTTCTCGACATCGATTCTCAGATAATGGGGACTCATG GCGGCGGCGGCGGCGGCGACGGCGATGTTGTTGATCTCAACTCGGAGATTGCTGAGGTGCGTGCTTGTGTTGTGAATGAA GAGAATGAGCTTGGAGAAACTGCTTTGTTCACTGCAGCTGAGAGGGGACACCTTGATGTTGTCAAGGAGCTGTTGAAACA TTCCAACCTTAAAAAGAAGAACCGATCTGGCTTTGATCCTTTGCATATTGCTGCTAGTCAAGGCCACCATGGTATCCCTC ACCATCCCTTTATTTTTCCTCAGAATCAATTCTGGCAACAAGGAGCTACTCACAAAAGCTAACTGCTTATTCACTTATAC TTTTAGTTGCCAATTTCAATTTCATTTTAATATTCACTTCATTGATTTAAGCACATGAGACTAAATTTGTCATTGATCAA GTAAGTTATATGAATTAAGCACTTATGTTGCTTGAGGTGTTAATTAAAGAAAATCAATAATTATGCTTTGAATGAAAAAC TTGAGAGGAAAGTTATGAAGCAATAGAATCATATATGTTTTTATGTTATGGAGAAAAGCCTACCAAATTTGGAGATAGAC CAATCTTTGTTTACTACTGTATTCTCTTAATTTAATGGCTGGCTTATTTGGACTCTTAACTGGTTGGCTCTGATAGCTTT TGGTTCATCCTTTGTGATGAGGACCTTCAAATTGTTGGTGTGTGATTTTATTGCGTCTTAATGTAGTTTAATGTGAGTAC TTTGTTTTTTGTTCTTCACTGTAATCCATTGTATATTTTCGTTTGCAGCCATCGTTCAGGTTTTACTAGATTATGACCCT GGATTAAGCAAAACTATTGGTCCGTCCAATGCTACTCCGCTTATAACAGCGGCGACAAGAGGGCACGTGGAAGTGGTGAA CGAGCTGCTGTCAAAGGATTGCAGCTTGTTGGAAATCGCTAGATCCAATGGCAAAAGTCCATTGCATTTGGCTGCTCGTC AGGGTCATGTGGAGATTGTAAGAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGGAGGACCGACAAGAAAGGACAAACT GCGTTGCATATGGCAGTGAAAGGGCAAAGTGCTGATGTAGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTCATGCT TCCTGACAAATTTGGTAACACAGCATTACACGTGGCAACCAGGAAAAAGCGAGTTGAGGTATGTCAACATTTGCAAAGCG TTACAAGCACCATGCAAATATAGATGAGACAGTACTATACTACAAATTAAGATACTGAATAAATGAGGTTTTCATCTCAT CTCATGACTAAGATGCCATGTCCTAGTAGTAGGGTACCTGAGTTTTTCAGTTTTGAACCTAGGGTACTATATTATATTCT ACTAAAAATGCAAACAAAGCTGCTGATTTGGGGTGCGTTTGGAACAGTGTTGTTAATGGCGGTTGGCGGACTATGGCGGA GAGCCAAAAACCCGCCATGAGATTCCACCATGGCACCGCCATGACCAATATTTGATAACACTGGTGTGGAAGAATTTATT TGGGCAAGGGTTTATCTTAAAGCATAAGAGCTTTGCTATTTGGCTCGAAGGGTCTCAATACGAACTGAACACATGTGATG TGAGCGTAGGAGTAAATTACGGGAATAGTTAAACATACAAAAGAGGGATTTAGGAGAATGTAATGAATTCCATATTTGCT TGGTGTTTGAATATGAATTGCTCGAGCCATAGAGCATTTCCCATAGCATAAACACTTGGTTAAGCGTATGATCTACCTGT AAGCTCTTTTTAGCTTATTTTGATAAGTTCCTCTAATTAGCAATAAACACTTGTACAGTTATACCTATATAAGCTCTATT GAACTTATTTCAATTAGTTTCTCAAACTAGCTTATCAACAAACAGCAACCTTAGTATGTGGTTTAACATAAATTTGATCA GAAGTTTGAGGTCCTTTATTTTTTTTATTAACATAGATACATGCAAAGCCTCCAGATATTTTTAAGCACCCATTACAGTT CCTAAAATGAAAAATCTAATTTTTTAGTTTCTCAATTTCTTGCACAGATAGTGAATGAGTTGTTAAATCTGCCAGACACC AATGTTAATGCATTAACCAGAGACCACAAAACAGCCCTCGACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCGTCAGA TATAAAGGACTGCCTTTCTCGGTATGGGGCACTTAGAGCGAATGAGCTGAATCAACCAAGGGATGAACTGAGGAAAACTG TTACTCAGATTAAGAAAGACGTTCACACCCAGCTGGAGCAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAA GAGCTAAGGAAACTCCACAGGGAAGGAATCAATAACGCCACAAACTCCGTGACAGTGGTGGCTGTGTTGTTTGCTACAGT TGCCTTTGCTGCTATATTCACCGTGCCTGGTGGGGATAACGATGATGGCTCAGGAGTGGTAGCGGCCTATTCTGCTTTTA AAATCTTCTTCATCTTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTGGTCAGAGGT GAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTGATTAACAAGCTTATGTGGTTGGCTTCTGTATGCACCTCAGTGGCGTT TATCGCGGCTTCATACATAGTTGTAGGTCGGAAGAATGAGTGGGCTGCAATTCTGGTTACAGTAGTTGGAGGTGTGATCA TATCAGGAGTTATTGGCACCATGACATACTATGTAGTGAGGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAG CAGGCCAGGAGGAGTGGATCCAACTCATGGCATCATTCGGAGTTCTCTAACTCCGAGGTTGATCCAATTTACGCGCTTTG A
CDS sequence (LotjaGi5g1v0358900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATGAGACTAAATTTGTCATTGATCAACTTTTGGTTCATCCTTTGTGATGAGGACCTTCAAATTGTTGCCATCGT TCAGGTTTTACTAGATTATGACCCTGGATTAAGCAAAACTATTGGTCCGTCCAATGCTACTCCGCTTATAACAGCGGCGA CAAGAGGGCACGTGGAAGTGGTGAACGAGCTGCTGTCAAAGGATTGCAGCTTGTTGGAAATCGCTAGATCCAATGGCAAA AGTCCATTGCATTTGGCTGCTCGTCAGGGTCATGTGGAGATTGTAAGAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCG GAGGACCGACAAGAAAGGACAAACTGCGTTGCATATGGCAGTGAAAGGGCAAAGTGCTGATGTAGTGAAATTGCTTCTTG ATGCAGATGCTGCTATTGTCATGCTTCCTGACAAATTTGGTAACACAGCATTACACGTGGCAACCAGGAAAAAGCGAGTT GAGATAGTGAATGAGTTGTTAAATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCCCTCGACAT TGCTGAAAATCTTCCCCTCTCTGAAGAGGCGTCAGATATAAAGGACTGCCTTTCTCGGTATGGGGCACTTAGAGCGAATG AGCTGAATCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAGATTAAGAAAGACGTTCACACCCAGCTGGAGCAAACC AAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATCAATAACGCCACAAA CTCCGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCCTTTGCTGCTATATTCACCGTGCCTGGTGGGGATAACGATG ATGGCTCAGGAGTGGTAGCGGCCTATTCTGCTTTTAAAATCTTCTTCATCTTCAATGCTATTGCGCTTTTTACATCTTTG GCTGTTGTGGTTGTTCAAATTACCCTGGTCAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTGATTAACAAGCT TATGTGGTTGGCTTCTGTATGCACCTCAGTGGCGTTTATCGCGGCTTCATACATAGTTGTAGGTCGGAAGAATGAGTGGG CTGCAATTCTGGTTACAGTAGTTGGAGGTGTGATCATATCAGGAGTTATTGGCACCATGACATACTATGTAGTGAGGTCT AAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCAGGCCAGGAGGAGTGGATCCAACTCATGGCATCATTCGGAGTT CTCTAACTCCGAGGTTGATCCAATTTACGCGCTTTGA
Protein sequence (LotjaGi5g1v0358900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMRLNLSLINFWFILCDEDLQIVAIVQVLLDYDPGLSKTIGPSNATPLITAATRGHVEVVNELLSKDCSLLEIARSNGK SPLHLAARQGHVEIVRALLSKDPQLARRTDKKGQTALHMAVKGQSADVVKLLLDADAAIVMLPDKFGNTALHVATRKKRV EIVNELLNLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQT KRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVAAYSAFKIFFIFNAIALFTSL AVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIAASYIVVGRKNEWAAILVTVVGGVIISGVIGTMTYYVVRS KRSRSMRKKEKQQARRSGSNSWHHSEFSNSEVDPIYAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 264 | 264 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Gene3D | 14 | 248 | 235 | 3.5E-39 | ||
| SUPERFAMILY | 24 | 191 | 168 | 1.26E-35 | ||
| ProSiteProfiles | 44 | 188 | 145 | 34.19 | ||
| SMART | 44 | 73 | 30 | 0.81 | ||
| Pfam | 59 | 137 | 79 | 7.7E-16 | ||
| SMART | 78 | 107 | 30 | 3.2E-5 | ||
| ProSiteProfiles | 78 | 110 | 33 | 12.823 | ||
| PANTHER | 78 | 428 | 351 | 1.2E-217 | – | |
| PANTHER | 78 | 428 | 351 | 1.2E-217 | – | |
| PRINTS | 79 | 94 | 16 | 9.0E-5 | ||
| SMART | 112 | 141 | 30 | 7.5E-4 | ||
| ProSiteProfiles | 112 | 144 | 33 | 10.499 | ||
| PRINTS | 128 | 142 | 15 | 9.0E-5 | ||
| SMART | 146 | 176 | 31 | 0.0021 | ||
| Pfam | 147 | 178 | 32 | 0.002 | ||
| Pfam | 260 | 366 | 107 | 6.0E-28 | ||
| Phobius | 265 | 287 | 23 | - | – | |
| TMHMM | 265 | 287 | 23 | - | – | |
| Phobius | 288 | 306 | 19 | - | – | |
| TMHMM | 307 | 329 | 23 | - | – | |
| Phobius | 307 | 327 | 21 | - | – | |
| Phobius | 328 | 346 | 19 | - | – | |
| Phobius | 347 | 367 | 21 | - | – | |
| TMHMM | 349 | 366 | 18 | - | – | |
| Phobius | 368 | 372 | 5 | - | – | |
| Phobius | 373 | 398 | 26 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 399 | 438 | 40 | - | – | |
| MobiDBLite | 406 | 438 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0358900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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