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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0359600 |
| Transcript ID | LotjaGi5g1v0359600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U4/U6 small nuclear ribonucleoprotein Prp3; TAIR: AT1G28060.1 Pre-mRNA-splicing factor 3; Swiss-Prot: sp|Q9C7E7|RDM16_ARATH Protein RDM16; TrEMBL-Plants: tr|I1JAI8|I1JAI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0359600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67419173..67424258) extracted from Lotus japonicus Gifu genome v1.2.
AATAGATGCGAAGAGAAGGAAGATAGAGTGAGAGAGGATCTCGCAAACCCTAAGATGGACGATAGAGAGAGATCGGGGGA TAGGAGAACCAGAGATCGTAACTCCGACCGCCACCATCGGAGCCACCGCGATTCCGATGACCACCGCCATCATCACCGTT CCGACAGGTCTCACAAGCGCGACCACAAATCCAGGGATTGGGAAGAAGATCGAGAAGGAAGCAGAGAGAGGTCCTATGAC AGAGACGACACCAAAGGTAAGGACAAAGTGAAGCGTGATGAGGAGGAGGATGGCATGGAAGATTCCGTCGAGCCACGACA CTCTTCGCATTCTCACAAGCGGAAGGATAGGGAACACAGTGAGGATCGCGAGAGGGAGAGGGACGACGATAAGAGAATTA GGGTTTCAGAGGATAGGAAGAGGGAACGGAGGAGGTTTGGGGATAAAGCCAAGAAGGATGAAGAAAATGACGATACTCAA TTCAACAATGGCAATGAAGAACACGCCACTGCTTCAGTACAAAACGTGAGTTTCATTTCTTCATTCTTTGATTTTGTTGA TAGATGACCCTAATTGTGATTTTTGATTCTGTGTAACTTGATTATTATTCTTAGTTTTGGCAATTCATTCTTTGTTTTTG ATTTGATTTGATGATCCATGGTCTGTTTCTTTCAGGGCACTACTGCATTGGGATTACCTGCTGTGGCGCCCACGAGTGTG CCCGAGACATCGTTGGCCCCTACTTCTTCCTCACATATCAAGGTATCTTCGATTTCTACCACAAATGAAAATAAGGGAGT TAGTATTACCAGGTCTCATGAGGTTACTGGAAAATCTAGTACAGATGGGTCTTCTTCAACTGCTGGAAAACCCGGGCGCC TCAATATTGAAGTCATAGCTAAGGCTAAGCTGGCTTTACAAAAGCAGAAAGAATTACATGAGAAGCTGAAGAATCTTCCA CTGGTTAGTTAGCTAGCCATTATTTATTTCTACTCATGTACTTATCTGTTCTTAGGTAGAAGATATGTTTCGATTTAATA GCTCCACTGGATGATGCTTGTTTACTTTACTATTAATTCTGTATGTTCCTCTGAATGTATTAAGTGCTGTGCTTTTGGTT GTGCAGTCGAATAAAATTTCTACCCCAAATAATGAATCAACTGTACCCTCTCTCAGTGTTGAAAAGCCATCAAGTCCTGC CCCCTTAGCTTCTTCTGGGCCTGTTGCAAGTATGTCAATTTTCCCTAATGCTGCTGCTGCTACTTCTACTCTTGCAAGTC CTGCAGCTAGTGGTACTAGTGCTGCTGGTGTACCCAACTATGAAGCTGTCAGGCGTGCTCAGGAGCTTGCGGCCAGGATG GGGTTTCGTCAAGATCCACAATTTGCTCCTCTTATAAACATGTTTCCTGGTCAGATGGTACCGGATGTTACAATCCCACA GAAACCCACAAAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGGAAATAGATGAACATGGAAATGTTGTTAATGTAA CTAAACCAAGCAACCTTAGCACTTTGAAGGTGCGTGATTTATCCATTGTCTCTTTTTATATTGTATCCTTTTGCGCTTTG GATTTGTGTCTTAACACTACAATTTGTGTATCAACATTCCAGGTCAACATTAACAAACAGAAGAAAGATGCGTTTGAAAT ACTGAAACCTGTATTAGATGTCGATCCTGATTCTAATCCTCATTTTGATCCAAGGATGGGGGTCAACAAGACAAAGCTCC TGCGGCCCAAAAGGAATAATTTCCTGTTTGTGGAAGAGGGAAAATGGTCAAAAGATGCTGAAACAATAAAATTGAAGGTA TCTTTTTGCCATTCATCTTCTCTTACTCTAGACATGGACCTACCCTTCGACTTAATTATTTTTAAGTGTCTTATATGTTT TTTTTAAATAAGCAATTGTCTTATACGTGTTTTTACATATTATTTGACTCATTCAGAGTCAATTTGGAGAAGCTCAAGCA AAGGAGCAGAAGGCCAAACAAGCGCAGTTGGCAAAGGCGAAGGCTGCTCCTGATATAAATCCAAACTTAATAGAAATAAC AGAGAGGGTTGTGATTAAAGAAAAACTCAAGGATCCAATTCCAGAAATCGAGTGGTGGTAAGTTCTTGCCTATTTAGACT ACTAGTTTCTATTCTACATGATTGCAAATTATAAGGATTATGTTAATTTTTTTTAGCTAGTATGCTGTATATGATTAAGA GGTTATGGCTTTAATTTTCCTTTCTATTGCTTGTAATGATGACTTTAATCAGAAGAAGATACAAAGTTATAAACTGGAAT AGCCTGATGTTCTCAATGGCAGATGATGTTTTGTTGCGGAAAGCCGGAAAGCCAAAAATCCGCCATAGAAATATGGAGGA TGGTGTTGTGGAGTATGGCGGAAGCCATGGCCACCGCAATTAAAATATAGTATATATAAAACTATATAAAATAGGCCTGC ATAGTATAATAAAGTAAATAATTACCTATGTCGATATCAGCGATCTGAACTGATAGGAAACCCTTAAATATAACACAATA TAGAACACCATAAGTCTCTTAACATTAATTCAAAAGAAAGTAAAATACCTTCACGTTTGAGTTTCAAGTGAAAATCAAAG ATTGAAAACATGACAAACTGAAATAATAGTGAGAATGAGAACCATACTGAGCTAAAACTTAAAGGGAAGTGGACTGTTAC GAATATGAGGGTGATGTCTACTTGTATAGTAACATGAAACGAATGGGTTGAGTACACTGGGGGGGGGTGTAATTCACAAA GTAGATGAGCAGAAAAAACATAAATGTCGAATTGGTGGGGAACGAGAGGTGGGGAACAGAAAGAACAGGAGTTCTGGTTA TCGATGGTAGAAGTGGGTTTTAGGGTTTCAGATTGGTTTATCCCTTAAAATGTGCAGGGTCACAACTTCTGCCAGTTTTG CTATTTTGACCCATTGCCGCATGGGGATTGCAGCTGCCATCCAAAACCTGCCACACCATTGTACTTGTATGGTTGTGTGG CCAAATTCCGCCATGGCCTCCATTTGGTAACACTGAATAGACCACCTTGATTGATTAATGAGAAACTGCTAGAGTACTCA GTTGAATAAGTGACTATTTGTGTCTACCTTAGATTGCCAGTAAGTTAAGACTTGGCAGTAAACTGAACAACTTGACATCA GTGACTATTTGTGAATCTAGTATTGCCTTTCTTCTGGAAATTTTGTCTTATTTAGCTGTTCTTAAATACAGAAAAATTAG AAGCAGGAAATATGATCAAAATATATATATTTCTTTAGTTCATGAGTTTATAAATATCTAATCAACTGTTTGAAATTATT AGGGACTTGCCTCTTTTGCAATCTGGGAATTATGGTGACATTGCTGACGGATCCATAGATGAAGATAAACTGAAAATGGA AAAAATCACTTTTTATGTGGAGCATCCTCGTCCCATTGAGCCACCTGCTGAGCCTGCCCCACCTCCACCTCAACCCCTCA AGCTAACCAAGCAAGAACAGAAGAAACTCCGGACACAAAGGCGTATAGCTAAGGAGAAAGATAGACAGGAGATGATAAGA CAGGGAGTCATAGAACCCCCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGTGCTGAGGCAACTCAAGA TCCTACTCGGCTTGAAAAGGAAATACGCAGTGCAGCTGCTGAGCGTGAGCAGGCCCACATAGATAGGAACATTGCTCGCA AGCTCACTCCTGCTGAGCTGCGTGAGAAGAAGGAGAGGAAGCTGTTTGATGACCCAAATACAGTTGAGACACTTGTCTCA CTCTACAGGATAAACGATCTCTCTCATCCGAAGGCCCGCTTTAGAGTTGATGTTAATGCTCAAGAGAACCGTTTGACTGG ATGTGCTGTGATCAGCGATGGTATGAGTATTGTTGTGGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGAAAGCTCA TGCTTAGACGTATCAATTGGAGTGATGTTTCAAAAGAGAATGAAGAAAATGACGAGTCAGATGATGACAAGCCTGTCAAT AAATGTGTTTTGGTGTGGCAAGGAAGTGTTGCCAAACCGAGCTTCAATAGGTTCAGTGTTCATGATTGCATCACTGAAGC AGCTGCTCGAAAAGTCTTTGTGGATGCTGGTGTTCCTCATTATTGGGATCAAGCTGTCAACTACGTAGATGATGGAGCTG TTTGAATTGTCTTCTGATGATGTTTTTGATCAACATTATTAGCATGCCTTGACTAAACCAACCCTTGTGGTTAGTGATCG GTTTTACAATTTGCATTAAGCAGGGTTTTAAGCAAATAATAAATACGAACAGGAATACTGCTGATGCTCCTTTGTTTCCT ATGGCATATTATGTCTAAACTGATTATAAATTTGCTAGATCATGAAGTGGTGTAAACCTTGGCTCATCTGTTTGGATATG TTCATGCTATATGATTGTGTGCGATATGACATTGGTTAAATTTTAGACCTCGGTATTTTCTGCAATGTTTCCTGCTATGT AAACTCTGATTTTTCATTCATACTATTGTGTTTGAAGATGATAATGTATTATTGAACTCCCTATTGATATCGTTCACCTC TTATAAAACGTTTCATCCAAAATAGGTGGGGGCATTGAGTATCTTGCTCATGTTGTTGCTCCATTTCAAAATATTATTGA CTATGGTTTTGCATAAATATATTTTATTTAAAACTATAAACTTTATTTAATAATATTATTTGCTTGATTAATGTGATTAT TGCTTGTTTGGCCTATTTACCCATCATTGAGTATAAGGATGTTCTTCGGGCTGATGGTATAGGTAGCCGGCCAATTTGAT ACATAAGGCTCATTTAGTATACACAAGTTTAGTTGCTGCATTTCAGAATTTTATTATGTTGTTTCTTTTATTTCAATTCT ATAAGGTTCTCGTTCTTAAAATTATTAGGCCACATGTTAGGCCCATACTAAAGTTAGGCTCTTTCTTAGTTATAGAAAAT AACTTTTAATATAAATTTGTATTTCTTTTTCCCACAAAATTGAAAC
CDS sequence (LotjaGi5g1v0359600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATAGAGAGAGATCGGGGGATAGGAGAACCAGAGATCGTAACTCCGACCGCCACCATCGGAGCCACCGCGATTC CGATGACCACCGCCATCATCACCGTTCCGACAGGTCTCACAAGCGCGACCACAAATCCAGGGATTGGGAAGAAGATCGAG AAGGAAGCAGAGAGAGGTCCTATGACAGAGACGACACCAAAGGTAAGGACAAAGTGAAGCGTGATGAGGAGGAGGATGGC ATGGAAGATTCCGTCGAGCCACGACACTCTTCGCATTCTCACAAGCGGAAGGATAGGGAACACAGTGAGGATCGCGAGAG GGAGAGGGACGACGATAAGAGAATTAGGGTTTCAGAGGATAGGAAGAGGGAACGGAGGAGGTTTGGGGATAAAGCCAAGA AGGATGAAGAAAATGACGATACTCAATTCAACAATGGCAATGAAGAACACGCCACTGCTTCAGTACAAAACGGCACTACT GCATTGGGATTACCTGCTGTGGCGCCCACGAGTGTGCCCGAGACATCGTTGGCCCCTACTTCTTCCTCACATATCAAGGT ATCTTCGATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGGTCTCATGAGGTTACTGGAAAATCTAGTACAG ATGGGTCTTCTTCAACTGCTGGAAAACCCGGGCGCCTCAATATTGAAGTCATAGCTAAGGCTAAGCTGGCTTTACAAAAG CAGAAAGAATTACATGAGAAGCTGAAGAATCTTCCACTGTCGAATAAAATTTCTACCCCAAATAATGAATCAACTGTACC CTCTCTCAGTGTTGAAAAGCCATCAAGTCCTGCCCCCTTAGCTTCTTCTGGGCCTGTTGCAAGTATGTCAATTTTCCCTA ATGCTGCTGCTGCTACTTCTACTCTTGCAAGTCCTGCAGCTAGTGGTACTAGTGCTGCTGGTGTACCCAACTATGAAGCT GTCAGGCGTGCTCAGGAGCTTGCGGCCAGGATGGGGTTTCGTCAAGATCCACAATTTGCTCCTCTTATAAACATGTTTCC TGGTCAGATGGTACCGGATGTTACAATCCCACAGAAACCCACAAAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGG AAATAGATGAACATGGAAATGTTGTTAATGTAACTAAACCAAGCAACCTTAGCACTTTGAAGGTCAACATTAACAAACAG AAGAAAGATGCGTTTGAAATACTGAAACCTGTATTAGATGTCGATCCTGATTCTAATCCTCATTTTGATCCAAGGATGGG GGTCAACAAGACAAAGCTCCTGCGGCCCAAAAGGAATAATTTCCTGTTTGTGGAAGAGGGAAAATGGTCAAAAGATGCTG AAACAATAAAATTGAAGAGTCAATTTGGAGAAGCTCAAGCAAAGGAGCAGAAGGCCAAACAAGCGCAGTTGGCAAAGGCG AAGGCTGCTCCTGATATAAATCCAAACTTAATAGAAATAACAGAGAGGGTTGTGATTAAAGAAAAACTCAAGGATCCAAT TCCAGAAATCGAGTGGTGGGACTTGCCTCTTTTGCAATCTGGGAATTATGGTGACATTGCTGACGGATCCATAGATGAAG ATAAACTGAAAATGGAAAAAATCACTTTTTATGTGGAGCATCCTCGTCCCATTGAGCCACCTGCTGAGCCTGCCCCACCT CCACCTCAACCCCTCAAGCTAACCAAGCAAGAACAGAAGAAACTCCGGACACAAAGGCGTATAGCTAAGGAGAAAGATAG ACAGGAGATGATAAGACAGGGAGTCATAGAACCCCCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGTG CTGAGGCAACTCAAGATCCTACTCGGCTTGAAAAGGAAATACGCAGTGCAGCTGCTGAGCGTGAGCAGGCCCACATAGAT AGGAACATTGCTCGCAAGCTCACTCCTGCTGAGCTGCGTGAGAAGAAGGAGAGGAAGCTGTTTGATGACCCAAATACAGT TGAGACACTTGTCTCACTCTACAGGATAAACGATCTCTCTCATCCGAAGGCCCGCTTTAGAGTTGATGTTAATGCTCAAG AGAACCGTTTGACTGGATGTGCTGTGATCAGCGATGGTATGAGTATTGTTGTGGTTGAAGGTGGAAGCAAGTCAATTAAG AGGTATGGAAAGCTCATGCTTAGACGTATCAATTGGAGTGATGTTTCAAAAGAGAATGAAGAAAATGACGAGTCAGATGA TGACAAGCCTGTCAATAAATGTGTTTTGGTGTGGCAAGGAAGTGTTGCCAAACCGAGCTTCAATAGGTTCAGTGTTCATG ATTGCATCACTGAAGCAGCTGCTCGAAAAGTCTTTGTGGATGCTGGTGTTCCTCATTATTGGGATCAAGCTGTCAACTAC GTAGATGATGGAGCTGTTTGA
Protein sequence (LotjaGi5g1v0359600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDRERSGDRRTRDRNSDRHHRSHRDSDDHRHHHRSDRSHKRDHKSRDWEEDREGSRERSYDRDDTKGKDKVKRDEEEDG MEDSVEPRHSSHSHKRKDREHSEDRERERDDDKRIRVSEDRKRERRRFGDKAKKDEENDDTQFNNGNEEHATASVQNGTT ALGLPAVAPTSVPETSLAPTSSSHIKVSSISTTNENKGVSITRSHEVTGKSSTDGSSSTAGKPGRLNIEVIAKAKLALQK QKELHEKLKNLPLSNKISTPNNESTVPSLSVEKPSSPAPLASSGPVASMSIFPNAAAATSTLASPAASGTSAAGVPNYEA VRRAQELAARMGFRQDPQFAPLINMFPGQMVPDVTIPQKPTKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNINKQ KKDAFEILKPVLDVDPDSNPHFDPRMGVNKTKLLRPKRNNFLFVEEGKWSKDAETIKLKSQFGEAQAKEQKAKQAQLAKA KAAPDINPNLIEITERVVIKEKLKDPIPEIEWWDLPLLQSGNYGDIADGSIDEDKLKMEKITFYVEHPRPIEPPAEPAPP PPQPLKLTKQEQKKLRTQRRIAKEKDRQEMIRQGVIEPPKPKVKISNLMKVLGAEATQDPTRLEKEIRSAAAEREQAHID RNIARKLTPAELREKKERKLFDDPNTVETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVISDGMSIVVVEGGSKSIK RYGKLMLRRINWSDVSKENEENDESDDDKPVNKCVLVWQGSVAKPSFNRFSVHDCITEAAARKVFVDAGVPHYWDQAVNY VDDGAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 223 | 223 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| MobiDBLite | 42 | 144 | 103 | - | – | |
| MobiDBLite | 145 | 164 | 20 | - | – | |
| PANTHER | 157 | 799 | 643 | 1.3E-270 | ||
| MobiDBLite | 173 | 223 | 51 | - | – | |
| Coils | 231 | 251 | 21 | - | – | |
| MobiDBLite | 251 | 282 | 32 | - | – | |
| MobiDBLite | 252 | 282 | 31 | - | – | |
| Pfam | 419 | 648 | 230 | 1.2E-62 | ||
| MobiDBLite | 549 | 572 | 24 | - | – | |
| MobiDBLite | 550 | 566 | 17 | - | – | |
| Coils | 565 | 587 | 23 | - | – | |
| Pfam | 673 | 797 | 125 | 2.3E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | U4/U6 x U5 tri-snRNP complex | A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. |
Expression pattern of LotjaGi5g1v0359600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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